Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Reverse (-)

18766341 .. 18768692

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATCCCCCGGAGTTTTTCCTCTTTTCATCTAGATTTAAAAATTAAGATGATGATGATGCTCCAGTACTCGGCAGCATTACGATGCTGTCTTCCTCCCGACCATTCAACAGTGCGTTCAGTTCTTCCCAACATCACCTCTGCAACTTCATCGTCATCCAATCTAACGAGAAGGGAAGTTTTATCCACTGCTTTAATCTCCACCACATTGGGCTTTACCGTGAATACTCCTTCAAAGTCCGCCGCAGCTGAGTTCTTGGAACTACCCAACTCCGGTGGCGTCAAGGCTTTGGACCTTCGTGTTGGTACTGGTGAAGTACCCTCCGATGGCGACCAGGTCTCTGTTCATTACTATGGAAGGTTGGCAGCAAAACAAGGATGGCGCTTTGACTCAACATATGATCACAAAGATGAAAATGGTGAACCAACTCCTTTTATATTCGTAGTTGGGACTGGAAAAGTCATTTCAGGGATTGAAACAGCTGTAAAATCTATGAAAGTGGGTGGTCTTCGTAGGATCGTCATACCACCATCGCAAGGATATCAGAGCACGTCACAAGAAGCCATACCACCTAATGTACTTACTCTCTTTGTTCCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

200

Amino Acids

21.61

Weight (kDa)

8.57

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	107 - 193	2.4e-19	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	240, 243
AclWI	GGATC	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	4 cut(s)	68, 307, 318, 579
AfiI	CCNNNNNNNGG	4 cut(s)	70, 272, 326, 536
AgsI	TTSAA	3 cut(s)	108, 234, 476
AjiI	CACGTC	1 cut(s)	552
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	2 cut(s)	248, 482
AluI	AGCT	2 cut(s)	248, 482
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	74, 245, 365
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	127, 323, 431
AvaII	GGWCC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	83, 500
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	3 cut(s)	86, 257, 377
BccI	CCATC	3 cut(s)	320, 372, 538
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	385
BisI	GCNGC	4 cut(s)	75, 243, 246, 366
BlsI	GCNGC	4 cut(s)	76, 244, 247, 367
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	10, 335
Bme18I	GGWCC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	10, 335
BmsI	GCATC	2 cut(s)	48, 74
BpiI	GAAGAC	2 cut(s)	83, 500
BpmI	CTGGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 272, 326, 536
Bse1I	ACTGG	3 cut(s)	64, 313, 457
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	2 cut(s)	155, 383
BseLI	CCNNNNNNNGG	4 cut(s)	70, 272, 326, 536
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	64, 313, 457
BseXI	GCAGC	3 cut(s)	86, 257, 377
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	2 cut(s)	10, 273
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	70, 272, 326, 536
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	3 cut(s)	3, 400, 516
BspACI	CCGC	2 cut(s)	240, 243
BspCNI	CTCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	343
BsrI	ACTGG	3 cut(s)	64, 313, 457
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	3, 400, 516
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	112, 220
BstACI	GRCGYC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	155, 383
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	3 cut(s)	6, 403, 519
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	3, 400, 516
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	8, 333
BstV1I	GCAGC	3 cut(s)	86, 257, 377
BstV2I	GAAGAC	2 cut(s)	83, 500
BstXI	CCANNNNNNTGG	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	516
BtrI	CACGTC	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	155, 383
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	117, 186
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	268
CsiI	ACCWGGT	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	67, 306, 317, 578
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviJI	RGCY	5 cut(s)	213, 248, 287, 482, 563
CviKI_1	RGCY	5 cut(s)	213, 248, 287, 482, 563
CviQI	GTAC	4 cut(s)	67, 306, 317, 578
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	5, 402, 518
DpnII	GATC	3 cut(s)	3, 400, 516
DraI	TTTAAA	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	542
FaiI	YATR	7 cut(s)	354, 397, 399, 437, 494, 524, 566
FaqI	GGGAC	1 cut(s)	463
FauNDI	CATATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	75, 243, 246, 366
FokI	GGATG	2 cut(s)	142, 390
Fsp4HI	GCNGC	4 cut(s)	75, 243, 246, 366
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	4 cut(s)	75, 243, 246, 366
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	385
HapII	CCGG	2 cut(s)	10, 273
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	10, 273
HphI	GGTGA	3 cut(s)	127, 323, 431
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	325, 546
Hpy188III	TCNNGA	3 cut(s)	32, 98, 596
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	4 cut(s)	165, 240, 305, 351
HpyCH4III	ACNGT	2 cut(s)	112, 220
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	1 cut(s)	382
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	3, 400, 516
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	8 cut(s)	23, 77, 286, 294, 320, 347, 438, 453
Lsp1109I	GCAGC	3 cut(s)	86, 257, 377
LweI	GCATC	2 cut(s)	48, 74
MabI	ACCWGGT	1 cut(s)	333
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	3 cut(s)	5, 402, 518
MboI	GATC	3 cut(s)	3, 400, 516
MboII	GAAGA	3 cut(s)	83, 116, 500
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	31, 105, 148, 331
MseI	TTAA	3 cut(s)	38, 45, 194
MslI	CAYNNNNRTG	3 cut(s)	82, 351, 408
MspA1I	CMGCKG	2 cut(s)	248, 482
MspI	CCGG	2 cut(s)	10, 273
MspR9I	CCNGG	2 cut(s)	10, 335
MvaI	CCWGG	1 cut(s)	335
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	3 cut(s)	3, 400, 516
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	552
PflFI	GACNNNGTC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	76, 244, 247, 367
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	248, 482
RsaI	GTAC	4 cut(s)	68, 307, 318, 579
RsaNI	GTAC	4 cut(s)	67, 306, 317, 578
RseI	CAYNNNNRTG	3 cut(s)	82, 351, 408
SaqAI	TTAA	3 cut(s)	38, 45, 194
SatI	GCNGC	4 cut(s)	75, 243, 246, 366
Sau3AI	GATC	3 cut(s)	3, 400, 516
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	10, 335
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	8 cut(s)	140, 250, 297, 339, 362, 484, 554, 574
SexAI	ACCWGGT	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	48, 74
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	3 cut(s)	82, 351, 408
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	2 cut(s)	240, 243
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	8, 333
TaaI	ACNGT	2 cut(s)	112, 220
TaiI	ACGT	1 cut(s)	554
TasI	AATT	1 cut(s)	42
TatI	WGTACW	2 cut(s)	66, 577
TauI	GCSGC	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	38, 45, 194
Tru9I	TTAA	3 cut(s)	38, 45, 194
TscAI	CASTG	2 cut(s)	117, 193
TseFI	GTSAC	1 cut(s)	552
TseI	GCWGC	3 cut(s)	74, 245, 365
Tsp45I	GTSAC	1 cut(s)	552
TspDTI	ATGAA	5 cut(s)	17, 138, 335, 426, 509
TspRI	CASTG	2 cut(s)	117, 193
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	1 cut(s)	32
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.