Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Reverse (-)

6487832 .. 6491223

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATTCTCCAGTGCTTCGCGGCACTACAATGCTCCATTGTTCCCCACCATCCAACCGTCCGTTTAGTTCATCCCAAGATCATCTCTCCAACGCCATCGTCATCAACCATAACAAGAAGGGGAGCTTTATCCGCTGCTTTAACGTCCACCACATTCACGCTGATCTTGACGCTGACACCTCCTTCAAAGTCCGCCATAGCCGAATTCTCTGAACTCCCAAGGTCCGGCGGCGTCAAGGCTTTGGAGCTTCGCCTCGGTGACGGTGAAGTACCCGCCGACGGCGACCAGGTTGCTGTTCATTACTATGGAAGGTTGGCAGCGAAACAAGGATGGCGCTTTGACTCGACATATGATCACAAAGATGAAAATGGTGAACCGATTCCTTTTGTATTCGTTATTGGGTCTGGGAAAGTCATTTCAGGGATTGAAACAGCTGTGAAATCTATGAAAGTGGGTGGTGTTCGTAGAGTTGTTATACCACCATCACAAGGGTATCAGAACACATCACAGGAACCTCTACCACCTAATTTTTTTGACAGGCAGAGACTGTTTACAACCATTTTCAATCCAACTCGTCTTGCTAATGGAGAAGGCTCAACTTTGGGGACTCTTGTGTTTGATATTGAGTTGGTCAGCATGAGACGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

217

Amino Acids

23.48

Weight (kDa)

9.39

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	20
AciI	CCGC	5 cut(s)	20, 132, 192, 228, 273
AcsI	RAATTY	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	224, 278, 488
AgsI	TTSAA	3 cut(s)	186, 428, 565
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	3 cut(s)	125, 247, 434
AluI	AGCT	3 cut(s)	125, 247, 434
Alw26I	GTCTC	2 cut(s)	538, 634
AlwNI	CAGNNNCTG	1 cut(s)	547
ApeKI	GCWGC	2 cut(s)	134, 317
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	269, 275, 383
AvaII	GGWCC	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BbvI	GCAGC	2 cut(s)	121, 329
BccI	CCATC	4 cut(s)	57, 103, 324, 490
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	538, 634
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	4 cut(s)	21, 135, 229, 318
BlsI	GCNGC	4 cut(s)	22, 136, 230, 319
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	218, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 278, 488
Bse1I	ACTGG	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	218, 253
BseGI	GGATG	3 cut(s)	49, 70, 335
BseLI	CCNNNNNNNGG	3 cut(s)	224, 278, 488
BseNI	ACTGG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	121, 329
Bsh1236I	CGCG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	3 cut(s)	224, 278, 488
BsmAI	GTCTC	2 cut(s)	538, 634
BsmBI	CGTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	619
Bsp143I	GATC	3 cut(s)	78, 162, 352
BspACI	CCGC	5 cut(s)	20, 132, 192, 228, 273
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	218, 253
BssMI	GATC	3 cut(s)	78, 162, 352
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	58, 263, 549
BstACI	GRCGYC	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	49, 70, 335
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	3 cut(s)	81, 165, 355
BstMAI	GTCTC	2 cut(s)	538, 634
BstMBI	GATC	3 cut(s)	78, 162, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	121, 329
BtsCI	GGATG	3 cut(s)	49, 70, 335
BtsIMutI	CAGTG	1 cut(s)	17
CaiI	CAGNNNCTG	1 cut(s)	547
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	2 cut(s)	178, 220
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	637
CviJI	RGCY	6 cut(s)	125, 200, 239, 247, 434, 594
CviKI_1	RGCY	6 cut(s)	125, 200, 239, 247, 434, 594
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	3 cut(s)	80, 164, 354
DpnII	GATC	3 cut(s)	78, 162, 352
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	222
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	634
FaeI	CATG	1 cut(s)	640
FaiI	YATR	8 cut(s)	110, 197, 306, 349, 351, 446, 476, 638
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	1 cut(s)	636
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	4 cut(s)	21, 135, 229, 318
FokI	GGATG	3 cut(s)	36, 57, 342
Fsp4HI	GCNGC	4 cut(s)	21, 135, 229, 318
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	4 cut(s)	21, 135, 229, 318
HaeII	RGCGCY	1 cut(s)	337
HapII	CCGG	1 cut(s)	225
HgaI	GACGC	2 cut(s)	178, 220
HhaI	GCGC	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	640
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	4, 341, 379, 607
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	3 cut(s)	269, 275, 383
Hpy166II	GTNNAC	3 cut(s)	147, 374, 552
Hpy188I	TCNGA	2 cut(s)	211, 498
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	3 cut(s)	147, 374, 552
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	111, 192, 303, 584
HpyCH4III	ACNGT	3 cut(s)	58, 263, 549
HpyCH4IV	ACGT	2 cut(s)	143, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	143, 643
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	640
HspAI	GCGC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	78, 162, 352
LmnI	GCTCC	3 cut(s)	38, 122, 244
LpnPI	CCDG	8 cut(s)	23, 238, 272, 299, 390, 405, 494, 523
Lsp1109I	GCAGC	2 cut(s)	121, 329
MabI	ACCWGGT	1 cut(s)	285
MaeII	ACGT	2 cut(s)	143, 643
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	80, 164, 354
MboI	GATC	3 cut(s)	78, 162, 352
MluCI	AATT	2 cut(s)	203, 526
MlyI	GAGTC	2 cut(s)	335, 601
MmeI	TCCRAC	3 cut(s)	77, 113, 593
MnlI	CCTC	3 cut(s)	189, 263, 525
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	3 cut(s)	28, 303, 360
MspA1I	CMGCKG	2 cut(s)	134, 434
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	78, 162, 352
NlaIII	CATG	1 cut(s)	640
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	4, 379
PkrI	GCNGC	4 cut(s)	22, 136, 230, 319
PleI	GAGTC	2 cut(s)	335, 601
PpsI	GAGTC	2 cut(s)	335, 601
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	3 cut(s)	28, 303, 360
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	4 cut(s)	21, 135, 229, 318
Sau3AI	GATC	3 cut(s)	78, 162, 352
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	2 cut(s)	335, 601
ScrFI	CCNGG	1 cut(s)	287
SexAI	ACCWGGT	1 cut(s)	285
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	3 cut(s)	28, 303, 360
Sse9I	AATT	2 cut(s)	203, 526
SsiI	CCGC	5 cut(s)	20, 132, 192, 228, 273
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	58, 263, 549
TaiI	ACGT	2 cut(s)	146, 646
TaqI	TCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	203, 526
TauI	GCSGC	2 cut(s)	23, 231
TfiI	GAWTC	2 cut(s)	4, 379
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	2 cut(s)	134, 317
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	59, 287, 378, 461
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.