Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Forward (+)

5602755 .. 5603389

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0037500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGTTCAGAATGTGAAGGTAAAGGTTCATGGCCGGAGCTTGTTGGAGAGCATGGGGAGGTTGCCAAAGGGAAAATTGAGAGAGAAAACCCTAATGTGACTGCTAGGATTGTAGTTGACGGAGAAATGTACGTCATTACCGACTACGATTGCTTTAGGGTTTGGGTTTGGGTTGACAAAGACGATGGAACTGTCGTAAAAACTCCGATTATCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

72

Amino Acids

8.01

Weight (kDa)

4.55

Isoelectric Point (pI)

8.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
potato_inhibit	PF00280	8 - 72	6.1e-23	Potato inhibitor I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	32
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	212
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
AoxI	GGCC	1 cut(s)	32
BccI	CCATC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	30, 53
CviJI	RGCY	2 cut(s)	34, 40
CviKI_1	RGCY	2 cut(s)	34, 40
CviQI	GTAC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	32
FaeI	CATG	2 cut(s)	33, 56
FaiI	YATR	2 cut(s)	31, 54
FatI	CATG	2 cut(s)	29, 52
FspBI	CTAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	33, 56
HincII	GTYRAC	2 cut(s)	118, 175
HindII	GTYRAC	2 cut(s)	118, 175
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	118, 175
Hpy188I	TCNGA	2 cut(s)	10, 207
Hpy8I	GTNNAC	2 cut(s)	118, 175
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	33, 56
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	48
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	97
MluCI	AATT	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	1 cut(s)	52
MseI	TTAA	1 cut(s)	217
MspI	CCGG	1 cut(s)	35
NlaIII	CATG	2 cut(s)	33, 56
NmuCI	GTSAC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	217
SetI	ASST	5 cut(s)	22, 28, 42, 63, 135
SgeI	CNNG	5 cut(s)	42, 47, 53, 65, 117
Sse9I	AATT	1 cut(s)	75
SspMI	CTAG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	135
TasI	AATT	1 cut(s)	75
Tru1I	TTAA	1 cut(s)	217
Tru9I	TTAA	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	135
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.