Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009850.1

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Forward (+)

31829 .. 34576

Gene Structure 2748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009850.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgatgatgatgctccagtactcggctgtctcggcagcactacgatgctctcttcctcccgaccattcaacagtgcgttcagttcttcccaacatcacctttgcaacttctggtgaagtaccctccgatggcgaccaggtctctgttcattactatggaaggttggcagcaaaacaaggatggcgctttgactcaacatatgatcacaaagatgaaaatggtgaaccaactccttttatattcgtagttgggactgggaaagtcatttcagggattgaaacagctgtaaaatctatgaaagtgggtggtcttcgtaggatcgttataccaccatcgcaaggatatcagagcacgtcacaagaacccataccgcctaatttttttgacaggcagagactgtttacaaccatcttcaatccaactcgtcttgctaatggagaaggttcaactttggggacgcttgtattcgatatcgagctggtcagcctgaggcataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

166

Amino Acids

18.28

Weight (kDa)

7.9

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	1 cut(s)	326
AfaI	GTAC	2 cut(s)	20, 120
AfiI	CCNNNNNNNGG	3 cut(s)	22, 128, 338
AgsI	TTSAA	4 cut(s)	69, 278, 415, 447
AjiI	CACGTC	1 cut(s)	354
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	284, 478
AluI	AGCT	2 cut(s)	284, 478
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	3 cut(s)	34, 145, 388
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	35, 167
AspLEI	GCGC	1 cut(s)	186
AsuHPI	GGTGA	3 cut(s)	88, 125, 233
AxyI	CCTNAGG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	47, 179
BccI	CCATC	4 cut(s)	122, 174, 340, 416
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	3 cut(s)	34, 145, 388
BfoI	RGCGCY	1 cut(s)	187
BisI	GCNGC	2 cut(s)	36, 168
BlsI	GCNGC	2 cut(s)	37, 169
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	137
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 128, 338
Bse1I	ACTGG	2 cut(s)	16, 259
Bse21I	CCTNAGG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	137
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	3 cut(s)	22, 128, 338
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	16, 259
BseXI	GCAGC	2 cut(s)	47, 179
BsiHKAI	GWGCWC	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	265, 469
BslI	CCNNNNNNNGG	3 cut(s)	22, 128, 338
BsmAI	GTCTC	3 cut(s)	34, 145, 388
BsmFI	GGGAC	2 cut(s)	265, 469
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	202, 318
BspACI	CCGC	1 cut(s)	371
BspCNI	CTCAG	1 cut(s)	480
BspPI	GGATC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	16, 259
BssMI	GATC	2 cut(s)	202, 318
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	73, 399
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	2 cut(s)	205, 321
BstMAI	GTCTC	3 cut(s)	34, 145, 388
BstMBI	GATC	2 cut(s)	202, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	47, 179
BstV2I	GAAGAC	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	1 cut(s)	186
CseI	GACGC	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	19, 119
CviJI	RGCY	4 cut(s)	26, 284, 478, 486
CviKI_1	RGCY	4 cut(s)	26, 284, 478, 486
CviQI	GTAC	2 cut(s)	19, 119
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	2 cut(s)	204, 320
DpnII	GATC	2 cut(s)	202, 318
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	145
Eco32I	GATATC	2 cut(s)	344, 472
Eco81I	CCTNAGG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	135
EcoRV	GATATC	2 cut(s)	344, 472
FaiI	YATR	8 cut(s)	156, 199, 201, 239, 296, 326, 368, 495
FaqI	GGGAC	2 cut(s)	265, 469
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	36, 168
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	36, 168
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	2 cut(s)	36, 168
HaeII	RGCGCY	1 cut(s)	187
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	3 cut(s)	88, 125, 233
Hpy166II	GTNNAC	2 cut(s)	224, 402
Hpy188I	TCNGA	2 cut(s)	127, 348
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	224, 402
HpyAV	CCTTC	2 cut(s)	153, 434
HpyCH4III	ACNGT	2 cut(s)	73, 399
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	1 cut(s)	353
HspAI	GCGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 318
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	8 cut(s)	29, 96, 122, 149, 240, 255, 373, 464
Lsp1109I	GCAGC	2 cut(s)	47, 179
LweI	GCATC	1 cut(s)	35
MabI	ACCWGGT	1 cut(s)	135
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	2 cut(s)	204, 320
MboI	GATC	2 cut(s)	202, 318
MboII	GAAGA	4 cut(s)	44, 77, 302, 403
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	376
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	3 cut(s)	66, 133, 483
MslI	CAYNNNNRTG	3 cut(s)	43, 153, 210
MspA1I	CMGCKG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	2 cut(s)	202, 318
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	354
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	37, 169
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	20, 120
RsaNI	GTAC	2 cut(s)	19, 119
RseI	CAYNNNNRTG	3 cut(s)	43, 153, 210
SatI	GCNGC	2 cut(s)	36, 168
Sau3AI	GATC	2 cut(s)	202, 318
ScaI	AGTACT	1 cut(s)	20
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	7 cut(s)	101, 141, 164, 286, 356, 445, 480
SexAI	ACCWGGT	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	35
SmiMI	CAYNNNNRTG	3 cut(s)	43, 153, 210
Sse9I	AATT	1 cut(s)	376
SsiI	CCGC	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	73, 399
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	2 cut(s)	468, 474
TasI	AATT	1 cut(s)	376
TatI	WGTACW	1 cut(s)	18
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	2 cut(s)	35, 167
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	3 cut(s)	137, 228, 311
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.