Rw0G015110

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00685
OG0012322
Physical Location & Seq
Reverse (-)
4460 .. 7476
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015110.1

Sequence Viewer

Length: 702 bp
ATGATGATGATGCTCCAGTACTCGGCAGCACTACGATGCTCTCTTCCTCCCGACCATTCAACAGTGCGTTCAGTTCTTCCCAACATCACCTCTGCAACTTCATCGTCATCCAATCTAACAAGAAGGGAAGTTTTATCGACTGCTTTAATCTCCACCACATTGGGCTTTACCGTGACTACTCCTTCAAAGTCCGCCGCAGCTGAGTTCTTGGAACTACCCAACTCCGGTGGCGTCAAGGCTTTGGACCTTCGTATTGGTACTGGTGAAGTACCCTCCGATGGCGACCAGGTCTCTGTTCATTACTATGGAAGGTTGGCAGCAAAACAAGGATGGCGCTTTGACTCAACATATGATCACAAAGATGAAAATGGTGAACCAACTCCTTTTATATTCGTAGTTGGGACTGGGAAAGTCATTTCAGGGATTGAAACAGCTGTAAAATCTATGAAATTTTTTGACAGGCAGAGACTGTTTACAACCATCTTCAATCCAACTCGTCTTGCTAATGGAGAAGGTTCAACTTTGGGGACGCTTGTATTCGATATCGAGCTGGTCAGCCTGAGGCATAATAAAGTCTTTCTTACTTCGCGAGCAGTAATATGTCTCTGGTGGCAAAAGGTACGGTGGAAACTGATGTTGTCATTTGTAGTCAAACAAGATCCATTCCACTGTTTATGTGTCAAAGGCACACCCCAGCAGTAA

Protein Analysis

233

Amino Acids

25.77

Weight (kDa)

9.25

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 91 - 185 3.4e-11 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19830
fragaria_vesca FvH4_4g09390 FvH4_4g09390
malus_domestica MD00G1111500.v1.1
prunus_persica Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis pycom13g22030
rosa_chinensis RchiOBHm_Chr4g0402661
rosa_multiflora Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii Rroxscaffold_5G00347410
rosa_rugosa Rorug04G0037500 Rorug04G0037600
rosa_samantha Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 589
AciI CCGC 2 cut(s) 192, 195
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 4 cut(s) 20, 259, 270, 621
AfiI CCNNNNNNNGG 3 cut(s) 22, 224, 278
AgsI TTSAA 5 cut(s) 60, 186, 428, 487, 519
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 200, 434, 550
AluI AGCT 3 cut(s) 200, 434, 550
Alw26I GTCTC 3 cut(s) 295, 460, 608
AlwI GGATC 1 cut(s) 653
AlwNI CAGNNNCTG 1 cut(s) 469
ApeKI GCWGC 3 cut(s) 26, 197, 317
ApoI RAATTY 1 cut(s) 449
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 79, 275, 383
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 560
BbvI GCAGC 3 cut(s) 38, 209, 329
BccI CCATC 3 cut(s) 272, 324, 488
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 3 cut(s) 295, 460, 608
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 4 cut(s) 27, 195, 198, 318
BlsI GCNGC 4 cut(s) 28, 196, 199, 319
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 224, 278
Bse1I ACTGG 3 cut(s) 16, 265, 409
Bse21I CCTNAGG 1 cut(s) 560
BseBI CCWGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 107, 335
BseLI CCNNNNNNNGG 3 cut(s) 22, 224, 278
BseMII CTCAG 2 cut(s) 192, 551
BseNI ACTGG 3 cut(s) 16, 265, 409
BseXI GCAGC 3 cut(s) 38, 209, 329
BseYI CCCAGC 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 589
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 415, 541
BslI CCNNNNNNNGG 3 cut(s) 22, 224, 278
BsmAI GTCTC 3 cut(s) 295, 460, 608
BsmFI GGGAC 2 cut(s) 415, 541
Bso31I GGTCTC 1 cut(s) 295
Bsp143I GATC 2 cut(s) 352, 658
Bsp68I TCGCGA 1 cut(s) 589
BspACI CCGC 2 cut(s) 192, 195
BspCNI CTCAG 2 cut(s) 193, 552
BspFNI CGCG 1 cut(s) 589
BspPI GGATC 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 3 cut(s) 16, 265, 409
BssMI GATC 2 cut(s) 352, 658
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 5 cut(s) 64, 172, 471, 624, 671
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 2 cut(s) 201, 560
BstF5I GGATG 2 cut(s) 107, 335
BstFNI CGCG 1 cut(s) 589
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 355, 661
BstMAI GTCTC 3 cut(s) 295, 460, 608
BstMBI GATC 2 cut(s) 352, 658
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 3 cut(s) 38, 209, 329
BstX2I RGATCY 1 cut(s) 658
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 1 cut(s) 658
Bsu36I CCTNAGG 1 cut(s) 560
BtsCI GGATG 2 cut(s) 107, 335
BtsIMutI CAGTG 2 cut(s) 69, 667
BtuMI TCGCGA 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 591
CaiI CAGNNNCTG 1 cut(s) 469
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 2 cut(s) 220, 538
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 4 cut(s) 19, 258, 269, 620
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviJI RGCY 6 cut(s) 165, 200, 239, 434, 550, 558
CviKI_1 RGCY 6 cut(s) 165, 200, 239, 434, 550, 558
CviQI GTAC 4 cut(s) 19, 258, 269, 620
DdeI CTNAG 2 cut(s) 201, 560
DpnI GATC 2 cut(s) 354, 660
DpnII GATC 2 cut(s) 352, 658
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 295
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 544
FaiI YATR 8 cut(s) 306, 349, 351, 389, 446, 567, 601, 676
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 2 cut(s) 415, 541
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 27, 195, 198, 318
FokI GGATG 2 cut(s) 94, 342
Fsp4HI GCNGC 4 cut(s) 27, 195, 198, 318
GlaI GCGC 1 cut(s) 335
GluI GCNGC 4 cut(s) 27, 195, 198, 318
GsaI CCCAGC 1 cut(s) 697
HaeII RGCGCY 1 cut(s) 337
HapII CCGG 1 cut(s) 225
HgaI GACGC 2 cut(s) 220, 538
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 79, 275, 383
Hpy166II GTNNAC 2 cut(s) 374, 474
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 50, 588
Hpy8I GTNNAC 2 cut(s) 374, 474
HpyAV CCTTC 5 cut(s) 117, 192, 257, 303, 506
HpyCH4III ACNGT 5 cut(s) 64, 172, 471, 624, 671
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 201, 560
Hsp92I GRCGYC 1 cut(s) 231
HspAI GCGC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 352, 658
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 38, 209, 329
LweI GCATC 1 cut(s) 26
MabI ACCWGGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 354, 660
MboI GATC 2 cut(s) 352, 658
MboII GAAGA 3 cut(s) 35, 68, 475
MflI RGATCY 1 cut(s) 658
MluCI AATT 1 cut(s) 449
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 4 cut(s) 57, 100, 283, 555
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 3 cut(s) 34, 303, 360
MspA1I CMGCKG 2 cut(s) 200, 434
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 589
NdeI CATATG 1 cut(s) 349
NdeII GATC 2 cut(s) 352, 658
NmuCI GTSAC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 589
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 4 cut(s) 28, 196, 199, 319
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 693
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 1 cut(s) 658
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 200, 434
RruI TCGCGA 1 cut(s) 589
RsaI GTAC 4 cut(s) 20, 259, 270, 621
RsaNI GTAC 4 cut(s) 19, 258, 269, 620
RseI CAYNNNNRTG 3 cut(s) 34, 303, 360
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 4 cut(s) 27, 195, 198, 318
Sau3AI GATC 2 cut(s) 352, 658
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 287
SetI ASST 9 cut(s) 92, 202, 249, 291, 314, 436, 517, 552, 621
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 1 cut(s) 26
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 34, 303, 360
Sse9I AATT 1 cut(s) 449
SsiI CCGC 2 cut(s) 192, 195
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 5 cut(s) 64, 172, 471, 624, 671
TaqI TCGA 3 cut(s) 137, 540, 546
TasI AATT 1 cut(s) 449
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 69, 674
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 26, 197, 317
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 4 cut(s) 90, 287, 378, 461
TspRI CASTG 2 cut(s) 69, 674
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 449
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.