Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013411.1

Orthogroup ID

OG0012322

Physical Location & Seq

Genomic Coordinates Forward (+)

5537 .. 18627

Gene Structure 13091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013411.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgcatgcattacctagttggaagtctcttctaggtaatatcccggttggcagtcccttccagactatatcccggttggcagtcccttccgatgcttcacctggttggcagtcccttccagatgacataagataccttcaaatcccagaaacctccgcagctacagtaacgtgctacagtacttccggctgctacagtccgctgctacagtgctccgtcgacttttctggacaacttttcggccgactttcggcgacttttcgggacaactttttggtcagctacagtaacttcctgcaatacagtacttccggctgctacagtacttccggcgacttttctggacaacttttcggccgacttccggcgacttttcgggcagctacagtaacttccggctctacagtacttccgagtcctccaaacttagagtttgttgagaagaaaacgatcgaccatatacatcgtcctgagttcttggaactacccaactccggtggcgtcaaggctttggaccttcgtgttggtactggtgaagtaccctccgatggcgaccaggtctctgttcattactatggaaggttggcagcaaaacaaggatggcgctttgactcaacatatgatcacaaagatgaaaatagtgaaccaactccttttattttcgtagttgggactgggaaagtcatttcagggattgaaacagctgtaaaatctatgaaagtgggtggtcttcgtaggatcgttataccaccatcgcaaggatatcagaacacgtcacaagaacccataccacctaatttttttgacaggcagagactgtttacaaccattttcaatccaactcgtcttgctaatggagaaggatcaactttggggacgcttgtattcgatatcgagctggtcagcctgaggcatcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

306

Amino Acids

33.44

Weight (kDa)

6.3

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19830
fragaria_vesca	FvH4_4g09390 FvH4_4g09390
malus_domestica	MD00G1111500.v1.1
prunus_persica	Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis	pycom13g22030
rosa_chinensis	RchiOBHm_Chr4g0402661
rosa_multiflora	Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347410
rosa_rugosa	Rorug04G0037500 Rorug04G0037600
rosa_samantha	Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana	Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	2 cut(s)	156, 200
AclWI	GGATC	2 cut(s)	746, 871
AcoI	YGGCCR	2 cut(s)	241, 355
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	6 cut(s)	181, 307, 325, 408, 529, 540
AfiI	CCNNNNNNNGG	5 cut(s)	250, 364, 494, 548, 758
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	3 cut(s)	140, 698, 835
AjiI	CACGTC	1 cut(s)	774
AjnI	CCWGG	2 cut(s)	100, 555
AluBI	AGCT	5 cut(s)	161, 282, 383, 704, 898
AluI	AGCT	5 cut(s)	161, 282, 383, 704, 898
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	3 cut(s)	30, 565, 808
AlwI	GGATC	2 cut(s)	746, 871
AlwNI	CAGNNNCTG	1 cut(s)	817
AoxI	GGCC	2 cut(s)	241, 355
ApeKI	GCWGC	6 cut(s)	158, 189, 202, 315, 380, 587
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	2 cut(s)	44, 73
AsuHPI	GGTGA	2 cut(s)	90, 545
AvaII	GGWCC	1 cut(s)	514
AxyI	CCTNAGG	1 cut(s)	908
BbsI	GAAGAC	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	215
BbvI	GCAGC	6 cut(s)	170, 176, 189, 302, 392, 599
BccI	CCATC	3 cut(s)	542, 594, 760
BciT130I	CCWGG	2 cut(s)	102, 557
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	44, 73
BcoDI	GTCTC	3 cut(s)	30, 565, 808
BfaI	CTAG	2 cut(s)	15, 32
BfmI	CTRYAG	8 cut(s)	162, 175, 193, 206, 283, 319, 384, 402
BfoI	RGCGCY	1 cut(s)	607
BisI	GCNGC	6 cut(s)	159, 190, 203, 316, 381, 588
BlsI	GCNGC	6 cut(s)	160, 191, 204, 317, 382, 589
BmcAI	AGTACT	4 cut(s)	181, 307, 325, 408
Bme1390I	CCNGG	4 cut(s)	44, 73, 102, 557
Bme18I	GGWCC	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	514
BmrFI	CCNGG	4 cut(s)	44, 73, 102, 557
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	82
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	722
BpuMI	CCSGG	2 cut(s)	44, 73
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	494
Bsc4I	CCNNNNNNNGG	5 cut(s)	250, 364, 494, 548, 758
Bse1I	ACTGG	2 cut(s)	535, 679
Bse21I	CCTNAGG	1 cut(s)	908
BseBI	CCWGG	2 cut(s)	102, 557
BseGI	GGATG	1 cut(s)	605
BseLI	CCNNNNNNNGG	5 cut(s)	250, 364, 494, 548, 758
BseMII	CTCAG	2 cut(s)	462, 899
BseNI	ACTGG	2 cut(s)	535, 679
BseX3I	CGGCCG	2 cut(s)	241, 355
BseXI	GCAGC	6 cut(s)	170, 176, 189, 302, 392, 599
Bsh1285I	CGRYCG	3 cut(s)	244, 358, 453
BshFI	GGCC	2 cut(s)	243, 357
BsiEI	CGRYCG	3 cut(s)	244, 358, 453
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	8 cut(s)	44, 73, 186, 312, 330, 365, 396, 495
BslFI	GGGAC	6 cut(s)	39, 68, 97, 278, 685, 889
BslI	CCNNNNNNNGG	5 cut(s)	250, 364, 494, 548, 758
BsmAI	GTCTC	3 cut(s)	30, 565, 808
BsmFI	GGGAC	6 cut(s)	39, 68, 97, 278, 685, 889
BsnI	GGCC	2 cut(s)	243, 357
Bso31I	GGTCTC	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	4 cut(s)	450, 622, 738, 863
BspACI	CCGC	2 cut(s)	156, 200
BspANI	GGCC	2 cut(s)	243, 357
BspCNI	CTCAG	2 cut(s)	463, 900
BspPI	GGATC	2 cut(s)	746, 871
BspTNI	GGTCTC	1 cut(s)	565
BsrI	ACTGG	2 cut(s)	535, 679
BssMI	GATC	4 cut(s)	450, 622, 738, 863
BssNI	GRCGYC	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	102, 557
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	427, 471, 908
BstF5I	GGATG	1 cut(s)	605
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	453, 625, 741, 866
BstMAI	GTCTC	3 cut(s)	30, 565, 808
BstMBI	GATC	4 cut(s)	450, 622, 738, 863
BstMCI	CGRYCG	3 cut(s)	244, 358, 453
BstNI	CCWGG	2 cut(s)	102, 557
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	4 cut(s)	42, 71, 100, 555
BstSFI	CTRYAG	8 cut(s)	162, 175, 193, 206, 283, 319, 384, 402
BstV1I	GCAGC	6 cut(s)	170, 176, 189, 302, 392, 599
BstV2I	GAAGAC	1 cut(s)	722
BstZI	CGGCCG	2 cut(s)	241, 355
Bsu36I	CCTNAGG	1 cut(s)	908
BsuRI	GGCC	2 cut(s)	243, 357
BtgZI	GCGATG	1 cut(s)	738
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	1 cut(s)	605
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	817
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	514
CseI	GACGC	2 cut(s)	490, 886
CsiI	ACCWGGT	2 cut(s)	100, 555
Csp6I	GTAC	6 cut(s)	180, 306, 324, 407, 528, 539
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	1 cut(s)	5
CviQI	GTAC	6 cut(s)	180, 306, 324, 407, 528, 539
DdeI	CTNAG	3 cut(s)	427, 471, 908
DpnI	GATC	4 cut(s)	452, 624, 740, 865
DpnII	GATC	4 cut(s)	450, 622, 738, 863
EaeI	YGGCCR	2 cut(s)	241, 355
EagI	CGGCCG	2 cut(s)	241, 355
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EclXI	CGGCCG	2 cut(s)	241, 355
Eco31I	GGTCTC	1 cut(s)	565
Eco32I	GATATC	2 cut(s)	764, 892
Eco47I	GGWCC	1 cut(s)	514
Eco52I	CGGCCG	2 cut(s)	241, 355
Eco81I	CCTNAGG	1 cut(s)	908
EcoRII	CCWGG	2 cut(s)	100, 555
EcoRV	GATATC	2 cut(s)	764, 892
EcoT22I	ATGCAT	2 cut(s)	6, 10
FaeI	CATG	1 cut(s)	8
FaqI	GGGAC	6 cut(s)	39, 68, 97, 278, 685, 889
FatI	CATG	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	159, 190, 203, 316, 381, 588
FokI	GGATG	1 cut(s)	612
Fsp4HI	GCNGC	6 cut(s)	159, 190, 203, 316, 381, 588
FspBI	CTAG	2 cut(s)	15, 32
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	6 cut(s)	159, 190, 203, 316, 381, 588
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	2 cut(s)	243, 357
HapII	CCGG	8 cut(s)	44, 73, 186, 312, 330, 365, 396, 495
HgaI	GACGC	2 cut(s)	490, 886
HhaI	GCGC	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	415, 611
HpaII	CCGG	8 cut(s)	44, 73, 186, 312, 330, 365, 396, 495
HphI	GGTGA	2 cut(s)	90, 545
Hpy166II	GTNNAC	3 cut(s)	220, 644, 822
Hpy188I	TCNGA	4 cut(s)	91, 414, 547, 768
Hpy188III	TCNNGA	6 cut(s)	61, 119, 228, 263, 342, 470
Hpy8I	GTNNAC	3 cut(s)	220, 644, 822
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	7 cut(s)	67, 96, 125, 146, 527, 573, 854
HpyCH4IV	ACGT	2 cut(s)	170, 773
HpyCH4V	TGCA	3 cut(s)	4, 8, 298
HpyF3I	CTNAG	3 cut(s)	427, 471, 908
HpySE526I	ACGT	2 cut(s)	170, 773
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	450, 622, 738, 863
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	6 cut(s)	170, 176, 189, 302, 392, 599
LweI	GCATC	1 cut(s)	82
MabI	ACCWGGT	2 cut(s)	100, 555
MaeI	CTAG	2 cut(s)	15, 32
MaeII	ACGT	2 cut(s)	170, 773
MaeIII	GTNAC	4 cut(s)	166, 287, 388, 774
MalI	GATC	4 cut(s)	452, 624, 740, 865
MboI	GATC	4 cut(s)	450, 622, 738, 863
MboII	GAAGA	3 cut(s)	20, 454, 722
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	1 cut(s)	796
MlyI	GAGTC	2 cut(s)	424, 605
MmeI	TCCRAC	1 cut(s)	863
MnlI	CCTC	4 cut(s)	163, 429, 553, 903
Mph1103I	ATGCAT	2 cut(s)	6, 10
MslI	CAYNNNNRTG	2 cut(s)	573, 630
MspA1I	CMGCKG	2 cut(s)	202, 704
MspI	CCGG	8 cut(s)	44, 73, 186, 312, 330, 365, 396, 495
MspR9I	CCNGG	4 cut(s)	44, 73, 102, 557
MvaI	CCWGG	2 cut(s)	102, 557
NciI	CCSGG	2 cut(s)	44, 73
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	4 cut(s)	450, 622, 738, 863
NlaIII	CATG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	774
NsiI	ATGCAT	2 cut(s)	6, 10
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	160, 191, 204, 317, 382, 589
Ple19I	CGATCG	1 cut(s)	453
PleI	GAGTC	2 cut(s)	423, 605
PpsI	GAGTC	2 cut(s)	423, 605
Psp6I	CCWGG	2 cut(s)	100, 555
PspGI	CCWGG	2 cut(s)	100, 555
PspPI	GGNCC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	817
PsyI	GACNNNGTC	1 cut(s)	557
PvuI	CGATCG	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	6 cut(s)	181, 307, 325, 408, 529, 540
RsaNI	GTAC	6 cut(s)	180, 306, 324, 407, 528, 539
RseI	CAYNNNNRTG	2 cut(s)	573, 630
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	6 cut(s)	159, 190, 203, 316, 381, 588
Sau3AI	GATC	4 cut(s)	450, 622, 738, 863
Sau96I	GGNCC	1 cut(s)	514
ScaI	AGTACT	4 cut(s)	181, 307, 325, 408
SchI	GAGTC	2 cut(s)	424, 605
ScrFI	CCNGG	4 cut(s)	44, 73, 102, 557
SduI	GDGCHC	1 cut(s)	215
SexAI	ACCWGGT	2 cut(s)	100, 555
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	8 cut(s)	162, 175, 193, 206, 283, 319, 384, 402
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	2 cut(s)	573, 630
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	796
SsiI	CCGC	2 cut(s)	156, 200
SspMI	CTAG	2 cut(s)	15, 32
StyD4I	CCNGG	4 cut(s)	42, 71, 100, 555
TaiI	ACGT	2 cut(s)	173, 776
TaqI	TCGA	4 cut(s)	219, 453, 888, 894
TasI	AATT	1 cut(s)	796
TatI	WGTACW	4 cut(s)	179, 305, 323, 406
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	774
TseI	GCWGC	6 cut(s)	158, 189, 202, 315, 380, 587
Tsp45I	GTSAC	1 cut(s)	774
TspDTI	ATGAA	3 cut(s)	557, 648, 731
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	1 cut(s)	215
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	514
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	2 cut(s)	15, 32
ZrmI	AGTACT	4 cut(s)	181, 307, 325, 408
Zsp2I	ATGCAT	2 cut(s)	6, 10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.