Rh4CG122000

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012322
Physical Location & Seq
Reverse (-)
23387937 .. 23401995
14059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG122000.1

Sequence Viewer

Length: 795 bp
ATGATGATGATGCTCCAGTACTCGGCAGCACTACGATGCTCTCTTCCTCCCGACCATTCAACAGTGCGTTCAGTTCTTCCCAACATCACCTCTGCAACTTCATCGTCATCCAATCTAACAAGAAGGGAAGTTTTATCGACTGCTTTAATCTCCACCACATTGGGCTTTACCGTGACTACTCCTTCAAAGTCCGCCGCAGCTGAGTTCTTGGAACTACCCAACTCCGGTGGCGTCAAGGCTTTGGACCTTCGTGTTGGTACTGGTGAAGTACCCTCCGATGGCGACCAGGTCTCTGTTCATTACTATGGAAGGTTGGCAGCAAAACAAGGATGGCGCTTTGACTCAACATATGATCACAAAGATGAAAATGGTGAACCAACTCCTTTTATATTCGTAGTTGGGACTGGGAAAGTCATTTCAGGGATTGAAACAGCTGTAAAATCTATGAAAGTGGGTGGTCTTCGTAGGATCGTTATACCACCATCGCAAGGATATCAGAGCACGTCACAAGAACCCATACCGCCTAATTTTTTTGACAGGCAGAGACTGTTTACAACCATCTTCAATCCAACTCGTCTTGCTAATGGAGAAGGTTCAACTTTGGGGACGCTTGTATTCGATATCGAGCTGGCTCAACTCCACCATTCCCCTCAGTGCCTCCCAACCTTCTTTACTATATTTCCCGGATACCAGCCCTGTATTGGGGAAATCCAAGGTGGTCGAAAGACCGAAAACTCCGATAAACTCCTTCAGTACCAAAATGAAGCACATCATGTTCCTTGGATAGAGAGGTAA

Protein Analysis

264

Amino Acids

28.93

Weight (kDa)

6.66

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 91 - 210 7.9e-21 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19830
fragaria_vesca FvH4_4g09390 FvH4_4g09390
malus_domestica MD00G1111500.v1.1
prunus_persica Prupe.1G087100_v2.0.a1 Prupe.1G087100_v2.0.a1
pyrus_communis pycom13g22030
rosa_chinensis RchiOBHm_Chr4g0402661
rosa_multiflora Rmu_sc0009850.1_g000005 Rmu_sc0013411.1_g000001
rosa_roxburghii Rroxscaffold_5G00347410
rosa_rugosa Rorug04G0037500 Rorug04G0037600
rosa_samantha Rh4AG115100 Rh4BG107700 Rh4CG122000 Rh4DG107500
rosa_wichuraiana Rw0G015110 Rw4G009180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 192, 195, 521
AclWI GGATC 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 734
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 4 cut(s) 20, 259, 270, 755
AfiI CCNNNNNNNGG 6 cut(s) 22, 224, 278, 488, 701, 702
AgsI TTSAA 5 cut(s) 60, 186, 428, 565, 597
AjiI CACGTC 1 cut(s) 504
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 200, 434, 628
AluI AGCT 3 cut(s) 200, 434, 628
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 2 cut(s) 295, 538
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 1 cut(s) 547
ApeKI GCWGC 3 cut(s) 26, 197, 317
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 684
AsuHPI GGTGA 3 cut(s) 79, 275, 383
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 3 cut(s) 38, 209, 329
BccI CCATC 4 cut(s) 272, 324, 490, 566
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 680
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 684
BcoDI GTCTC 2 cut(s) 295, 538
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 680
BisI GCNGC 4 cut(s) 27, 195, 198, 318
BlsI GCNGC 4 cut(s) 28, 196, 199, 319
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 287, 684
Bme18I GGWCC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 287, 684
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 684
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 712, 779
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 224, 278, 488, 701, 702
Bse1I ACTGG 3 cut(s) 16, 265, 409
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 712, 779
BseGI GGATG 2 cut(s) 107, 335
BseLI CCNNNNNNNGG 6 cut(s) 22, 224, 278, 488, 701, 702
BseMII CTCAG 2 cut(s) 192, 665
BseNI ACTGG 3 cut(s) 16, 265, 409
BseXI GCAGC 3 cut(s) 38, 209, 329
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 2 cut(s) 225, 684
BslFI GGGAC 2 cut(s) 415, 619
BslI CCNNNNNNNGG 6 cut(s) 22, 224, 278, 488, 701, 702
BsmAI GTCTC 2 cut(s) 295, 538
BsmFI GGGAC 2 cut(s) 415, 619
Bso31I GGTCTC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 2 cut(s) 352, 468
BspACI CCGC 3 cut(s) 192, 195, 521
BspCNI CTCAG 2 cut(s) 193, 664
BspPI GGATC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 3 cut(s) 16, 265, 409
BssECI CCNNGG 2 cut(s) 712, 779
BssMI GATC 2 cut(s) 352, 468
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 2 cut(s) 712, 779
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 3 cut(s) 64, 172, 549
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 2 cut(s) 201, 651
BstF5I GGATG 2 cut(s) 107, 335
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 355, 471
BstMAI GTCTC 2 cut(s) 295, 538
BstMBI GATC 2 cut(s) 352, 468
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 285, 682
BstV1I GCAGC 3 cut(s) 38, 209, 329
BstV2I GAAGAC 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 160
BsuI GTATCC 1 cut(s) 680
BtgZI GCGATG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 2 cut(s) 107, 335
BtsIMutI CAGTG 2 cut(s) 69, 659
Cac8I GCNNGC 1 cut(s) 630
CaiI CAGNNNCTG 1 cut(s) 547
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 2 cut(s) 220, 616
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 4 cut(s) 19, 258, 269, 754
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 773
CviJI RGCY 7 cut(s) 165, 200, 239, 434, 628, 632, 694
CviKI_1 RGCY 7 cut(s) 165, 200, 239, 434, 628, 632, 694
CviQI GTAC 4 cut(s) 19, 258, 269, 754
DdeI CTNAG 2 cut(s) 201, 651
DpnI GATC 2 cut(s) 354, 470
DpnII GATC 2 cut(s) 352, 468
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 712, 779
Eco31I GGTCTC 1 cut(s) 295
Eco32I GATATC 2 cut(s) 494, 622
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 2 cut(s) 494, 622
EcoT14I CCWWGG 2 cut(s) 712, 779
ErhI CCWWGG 2 cut(s) 712, 779
FaeI CATG 1 cut(s) 776
FaiI YATR 9 cut(s) 306, 349, 351, 389, 446, 476, 518, 677, 774
FaqI GGGAC 2 cut(s) 415, 619
FatI CATG 1 cut(s) 772
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 27, 195, 198, 318
FokI GGATG 2 cut(s) 94, 342
Fsp4HI GCNGC 4 cut(s) 27, 195, 198, 318
GlaI GCGC 1 cut(s) 335
GluI GCNGC 4 cut(s) 27, 195, 198, 318
HaeII RGCGCY 1 cut(s) 337
HapII CCGG 2 cut(s) 225, 684
HgaI GACGC 2 cut(s) 220, 616
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 776
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 1 cut(s) 341
HpaII CCGG 2 cut(s) 225, 684
HphI GGTGA 3 cut(s) 79, 275, 383
Hpy166II GTNNAC 2 cut(s) 374, 552
Hpy188I TCNGA 3 cut(s) 277, 498, 739
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 374, 552
HpyAV CCTTC 7 cut(s) 117, 192, 257, 303, 584, 676, 758
HpyCH4III ACNGT 3 cut(s) 64, 172, 549
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 201, 651
HpySE526I ACGT 1 cut(s) 503
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 776
HspAI GCGC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 352, 468
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 38, 209, 329
LweI GCATC 1 cut(s) 26
MabI ACCWGGT 1 cut(s) 285
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 2 cut(s) 172, 504
MalI GATC 2 cut(s) 354, 470
MboI GATC 2 cut(s) 352, 468
MboII GAAGA 4 cut(s) 35, 68, 452, 553
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 1 cut(s) 526
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 6 cut(s) 57, 100, 283, 660, 668, 783
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 3 cut(s) 34, 303, 360
MspA1I CMGCKG 2 cut(s) 200, 434
MspI CCGG 2 cut(s) 225, 684
MspR9I CCNGG 2 cut(s) 287, 684
MvaI CCWGG 1 cut(s) 287
NciI CCSGG 1 cut(s) 684
NdeI CATATG 1 cut(s) 349
NdeII GATC 2 cut(s) 352, 468
NlaIII CATG 1 cut(s) 776
NmuCI GTSAC 2 cut(s) 172, 504
PflFI GACNNNGTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 4 cut(s) 28, 196, 199, 319
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 547
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 200, 434
RsaI GTAC 4 cut(s) 20, 259, 270, 755
RsaNI GTAC 4 cut(s) 19, 258, 269, 754
RseI CAYNNNNRTG 3 cut(s) 34, 303, 360
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 4 cut(s) 27, 195, 198, 318
Sau3AI GATC 2 cut(s) 352, 468
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 287, 684
SduI GDGCHC 1 cut(s) 503
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 1 cut(s) 26
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 34, 303, 360
Sse9I AATT 1 cut(s) 526
SsiI CCGC 3 cut(s) 192, 195, 521
StyD4I CCNGG 2 cut(s) 285, 682
StyI CCWWGG 2 cut(s) 712, 779
TaaI ACNGT 3 cut(s) 64, 172, 549
TaiI ACGT 1 cut(s) 506
TaqI TCGA 4 cut(s) 137, 618, 624, 721
TaqII GACCGA 1 cut(s) 743
TasI AATT 1 cut(s) 526
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 2 cut(s) 69, 659
TseFI GTSAC 2 cut(s) 172, 504
TseI GCWGC 3 cut(s) 26, 197, 317
Tsp45I GTSAC 2 cut(s) 172, 504
TspDTI ATGAA 5 cut(s) 90, 287, 378, 461, 777
TspRI CASTG 2 cut(s) 69, 659
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.