AT4G20060

snRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010119
Physical Location & Seq
Reverse (-)
10854487 .. 10859524
5038 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G20060.1

Sequence Viewer

Length: 3405 bp
ATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCATCAAGCTCGAGAAATCTCTTCGTTCTAAAAACTCAGTTAAAGCCGTTGAAGCTATCTTAGAGACTGGTGGGAAGCTTGAACAGTGGAGTAAAGAACCAGAATCTGCTATTGCTGTTTACAATTTATTTGGTTTGGTTCCTGAAGAAGATAAGCTCTTTTCAAATACTATCCTGTTGAGGCTTGTTGACGCGTTTTGTGTTGGGGATAAGCTTATTAAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTTAAGCTAAGCCGAGGGAAGAACGTAAATGAATCAGCAAGTTGGTTTTTGTCAAAGGGTAGGGTGCATAACCACTTGGAATTGCTTACACGAGTGAAGAATGTGTATGATAAGGGTGATACTGAGTCTAAAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGATTTTGCTAGCGAATTTGCTCCTGTACGGTATTTGGTTTTCAGCAGTATGGTTTCTCCTCATGATCTGGAGGGAAGATCAGCTCTGTTTGCTGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCATTGGTTGTTCTGGGGATGTTAAACGACATGGTGAAGTTCCCAGACATAACGCCAAAGACCAGGTTAGCTGCTGTGCGAGTTTTTGCAAAAATGGGATGCTCGCATACAATTGCTAATAGAGCATTCAAGATTTGTATGAAGCTAATGCTGGACTCCCCAAAAGAGGACAATTTGGTTCCATTCCTGGTTTCCTTGACTAAGCTTGCTTCAAGATCAACTCATCTTGCTTCTGAACTGGCAGAGGTTATCATACCCTTTCTGGGTGAAGATAAAACTTCTCATGCTCGAGCTGCAGTATTGAGATGTCTCCACTTTCTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGATATTGCAAGTGTTTCAAGCTTATTAAAGCAAGAAGAGCTCTCATCAGATATGCAAGTTAAAGCTCTTCAAATTTTTCAGAAGATAGTTGTCTACAAACTATGCATGACTGATGCATCTGAATTACTTCAGCTCATAGCTATTACTGAGAATGCATCTCATTCTCAGATCTTTTCAAGCAGTTGTTTAGCCATCAGTGTCTTGGTGAGTATATGGACAGAAATAGTTCGGACAGCGGAAAAAAGATCAATTGAGATATCTTCAACATCTCTTCCGATGCAGCTCGTTGTATTAATCATGGACAGGGTCGCCTTGCTGGGGCGATTATGTTCTGATCTTTTTCGAGCTGGCTATGCTGTAGTTAGTGAGGTTCAAGACCTCTTGAAGGTTCTCCACCTATTAGTAGGAAAACATTCTGAACTGAGACTGCTAGTTCTTGAAAAAGTCAGATTATTCTTAACGTATATTGTGAGCCTAAATGATGGCTTAAGAAAAGCAGATGGAGCTCATGAATTGCTATTTGGTGTTATCAATTATAAAGACAAAAGAGGGGTGGTCATGAGGTCAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAAAATCTCGAGGGAGATGATAATCTTTTGTCTGAAATTTATGAAAAGGTGAAGCATATCACTGAGTTTGTAAGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTCACACTGCTACTACATTCCCCGATTCTTTGGGGATTCTCTGTGAATGATGATACAGGAAATTCAGGCGTATCACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTTAATGGAGAGAAACTACTGGCCTGCTTACAGAGCTGGGGTTTACGCAGCACGTTTGGGTGCTTGGGTCACATCTGCTATGATTTTTGACCAGCTCAAAACCAACGTCCAGTCTGATATTAATTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCTTCTCACTCCAAGTGATAGTGTCAAGTTAGTCAATTGGCTGAAAAATAATGGTTATTTACCAGAACTCTCCAAAGATGCCTCTGGAGAGTTTGCACACTGTCTAGCTCTTCGTGAAGCTTATATGAATTTACAATCGTCTCTGGGAATGTTGGGAAATATTATAGCGTCAAGTGGAGTATTCTGTTTCCAAACGTGGTTCTTGGTTCTAAAGACTCGGGTATTGGAAACCGTGCTTGAACTCGTCGAATGCCTTGGGCTGCTTAACCAAGATTTACGCAACAAGAATCAGGTGGAAGAAATACTCTTGACTGGTTGCGATTCCCTGCAACAGCTTCCTCGGATTTCTATTCAGCTACAAAAGTTGGCAAAGGAATTTGATATGTTGGCGACGTGTTTCATAGACATAGACGATAGCAGTTCTAGCATTATCACAACAATTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAATTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTGGTTCCTTTCACTTCACAAAGCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGGCTGTGGAAAGTAGACCCCAATGTCTGCGAAAAGCTCAACATACTCGTTAACACAAACGAGTCGTTAAACTGTTTCCATTTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTAAAGATGCTGCTCTCTATTTGCAGAGATGCTCTTTCATGCACTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAAGAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTACTGTCACAAGCAATTATGAAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTTGGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGTAGCAAACGTATTCCTGACACAGTTTCAGTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACATAAAACAACGGCAAGTCCCTGTTCGACTTAACAAACTGTATTGCCTTCTCTATACTAAACTAGCTTATCATTCTCCAACTCAACACGGTGAAAACAACAGAAACCAAATGTCTTATTCCCCTTGGAGAGATGAAGATCTGATTGAAATGAGTAACAAGCTGTTTCATCATGCTATAAAGTCTGGTAAGAAGCCGGACGTCTCAGGTCGATTTGATTGGGCCAAGAGTGGTGTTTCTACGGTTGTGCAGTTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGTTAGACGTTTCGCGTTTCCCGGTTGGTTCATATCAAATAAAATGGCTAAGCTGTTGCGTTGATCAACATGGTTCTTACTGGAATCTTCTACCTCTCAATGGCAAACCTGTGTTTACGGTTAAGAAAGCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1134

Amino Acids

127.31

Weight (kDa)

7.92

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INTS7_N PF24436 65 - 413 3.6e-27 Integrator complex subunit 7, N-terminal
INTS7_HB PF24437 622 - 796 2.1e-06 Integrator complex subunit 7 helical bundle
INTS7_C_plants PF22966 957 - 1131 3.5e-65 Integrator complex subunit 7, C-terminal domain in plants
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1476
AasI GACNNNNNNGTC 1 cut(s) 2570
AatII GACGTC 1 cut(s) 3180
AccB1I GGYRCC 1 cut(s) 2870
AccB7I CCANNNNNTGG 1 cut(s) 33
AccI GTMKAC 2 cut(s) 1032, 2562
AccII CGCG 2 cut(s) 230, 3283
AciI CCGC 2 cut(s) 1175, 2511
AcsI RAATTY 7 cut(s) 467, 1011, 1584, 1720, 1961, 2098, 2345
AcuI CTGAAG 3 cut(s) 201, 1052, 2951
AcyI GRCGYC 1 cut(s) 3177
AfaI GTAC 1 cut(s) 480
AfiI CCNNNNNNNGG 8 cut(s) 33, 745, 842, 1257, 1324, 1954, 2867, 3368
AflII CTTAAG 1 cut(s) 1426
AflIII ACRYGT 2 cut(s) 228, 2363
AjiI CACGTC 1 cut(s) 2364
AjnI CCWGG 3 cut(s) 641, 765, 2464
AjuI GAANNNNNNNTTGG 2 cut(s) 1443, 1475
Alw21I GWGCWC 3 cut(s) 981, 1447, 2522
Alw26I GTCTC 5 cut(s) 95, 893, 1357, 2115, 3184
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 5 cut(s) 47, 867, 1556, 2187, 2521
AoxI GGCC 3 cut(s) 1811, 2858, 3198
ApoI RAATTY 7 cut(s) 467, 1011, 1584, 1720, 1961, 2098, 2345
ArsI GACNNNNNNTTYG 2 cut(s) 1881, 1913
AseI ATTAAT 2 cut(s) 1232, 1911
Asp700I GAANNNNTTC 4 cut(s) 1065, 1164, 1351, 1765
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 3198
AsuC2I CCSGG 1 cut(s) 3290
AsuHPI GGTGA 6 cut(s) 416, 625, 857, 1156, 1609, 3080
AsuII TTCGAA 1 cut(s) 3231
AsuNHI GCTAGC 1 cut(s) 461
AvaI CYCGRG 5 cut(s) 47, 867, 1556, 2187, 2521
BanI GGYRCC 1 cut(s) 2870
BanII GRGCYC 2 cut(s) 981, 1447
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 2957
Bbv12I GWGCWC 3 cut(s) 981, 1447, 2522
BccI CCATC 3 cut(s) 1139, 1415, 1433
BceAI ACGGC 3 cut(s) 68, 2564, 3005
BcgI CGANNNNNNTGC 4 cut(s) 28, 62, 2864, 2898
BciT130I CCWGG 3 cut(s) 643, 767, 2466
BclI TGATCA 1 cut(s) 3331
BcnI CCSGG 1 cut(s) 3290
BcoDI GTCTC 5 cut(s) 95, 893, 1357, 2115, 3184
BfaI CTAG 8 cut(s) 462, 1370, 1514, 2075, 2394, 2637, 2954, 3041
BfmI CTRYAG 3 cut(s) 546, 873, 1296
BfrI CTTAAG 1 cut(s) 1426
BglII AGATCT 3 cut(s) 1107, 2956, 3115
BlpI GCTNAGC 2 cut(s) 296, 3317
Bme1390I CCNGG 4 cut(s) 643, 767, 2466, 3290
BmeT110I CYCGRG 5 cut(s) 47, 867, 1556, 2187, 2521
BmgBI CACGTC 1 cut(s) 2364
BmgT120I GGNCC 1 cut(s) 3198
BmiI GGNNCC 4 cut(s) 177, 759, 2493, 2872
BmrFI CCNGG 4 cut(s) 643, 767, 2466, 3290
BmtI GCTAGC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 2957
BpmI CTGGAG 2 cut(s) 542, 2076
Bpu1102I GCTNAGC 2 cut(s) 296, 3317
Bpu14I TTCGAA 1 cut(s) 3231
BpuMI CCSGG 1 cut(s) 3290
BsaBI GATNNNNATC 2 cut(s) 1569, 3114
BsaHI GRCGYC 1 cut(s) 3177
BsaJI CCNNGG 6 cut(s) 27, 301, 1953, 2224, 2309, 3101
BsaXI ACNNNNNCTCC 2 cut(s) 2744, 2774
Bsc4I CCNNNNNNNGG 8 cut(s) 33, 745, 842, 1257, 1324, 1954, 2867, 3368
Bse1I ACTGG 6 cut(s) 109, 822, 1814, 1900, 2287, 3353
Bse8I GATNNNNATC 2 cut(s) 1569, 3114
BseBI CCWGG 3 cut(s) 643, 767, 2466
BseDI CCNNGG 6 cut(s) 27, 301, 1953, 2224, 2309, 3101
BseGI GGATG 4 cut(s) 603, 683, 918, 2820
BseJI GATNNNNATC 2 cut(s) 1569, 3114
BseLI CCNNNNNNNGG 8 cut(s) 33, 745, 842, 1257, 1324, 1954, 2867, 3368
BseMII CTCAG 9 cut(s) 87, 402, 1077, 1118, 1352, 1602, 2408, 2754, 3195
BseNI ACTGG 6 cut(s) 109, 822, 1814, 1900, 2287, 3353
BseRI GAGGAG 2 cut(s) 501, 2765
BseYI CCCAGC 2 cut(s) 1255, 1826
BsgI GTGCAG 1 cut(s) 3245
Bsh1236I CGCG 2 cut(s) 230, 3283
BshFI GGCC 3 cut(s) 1813, 2860, 3200
BshNI GGYRCC 1 cut(s) 2870
BsiHKAI GWGCWC 3 cut(s) 981, 1447, 2522
BsiHKCI CYCGRG 5 cut(s) 47, 867, 1556, 2187, 2521
BsiSI CCGG 2 cut(s) 3173, 3290
BslFI GGGAC 1 cut(s) 2981
BslI CCNNNNNNNGG 8 cut(s) 33, 745, 842, 1257, 1324, 1954, 2867, 3368
BsmAI GTCTC 5 cut(s) 95, 893, 1357, 2115, 3184
BsmBI CGTCTC 2 cut(s) 2115, 3184
BsmFI GGGAC 1 cut(s) 2981
BsmI GAATGC 3 cut(s) 704, 1096, 2225
BsnI GGCC 3 cut(s) 1813, 2860, 3200
BsoBI CYCGRG 5 cut(s) 47, 867, 1556, 2187, 2521
Bsp119I TTCGAA 1 cut(s) 3231
Bsp1286I GDGCHC 3 cut(s) 981, 1447, 2522
Bsp143I GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
Bsp1720I GCTNAGC 2 cut(s) 296, 3317
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 2 cut(s) 1175, 2511
BspANI GGCC 3 cut(s) 1813, 2860, 3200
BspCNI CTCAG 9 cut(s) 86, 403, 1078, 1117, 1353, 1603, 2409, 2755, 3194
BspFNI CGCG 2 cut(s) 230, 3283
BspHI TCATGA 4 cut(s) 514, 1447, 1497, 3401
BspLI GGNNCC 4 cut(s) 177, 759, 2493, 2872
BspMAI CTGCAG 2 cut(s) 550, 877
BspOI GCTAGC 1 cut(s) 465
BspQI GCTCTTC 3 cut(s) 969, 1011, 2085
BspT104I TTCGAA 1 cut(s) 3231
BspT107I GGYRCC 1 cut(s) 2870
BspTI CTTAAG 1 cut(s) 1426
BsrI ACTGG 6 cut(s) 109, 822, 1814, 1900, 2287, 3353
BssECI CCNNGG 6 cut(s) 27, 301, 1953, 2224, 2309, 3101
BssMI GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
BssNI GRCGYC 1 cut(s) 3177
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 3 cut(s) 27, 2224, 3101
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 3 cut(s) 643, 767, 2466
Bst6I CTCTTC 5 cut(s) 63, 969, 1011, 1215, 2085
BstACI GRCGYC 1 cut(s) 3177
BstAFI CTTAAG 1 cut(s) 1426
BstBI TTCGAA 1 cut(s) 3231
BstC8I GCNNGC 9 cut(s) 22, 261, 463, 553, 683, 786, 1288, 1815, 2783
BstDSI CCRYGG 1 cut(s) 27
BstENI CCTNNNNNAGG 1 cut(s) 1322
BstF5I GGATG 4 cut(s) 603, 683, 918, 2820
BstFNI CGCG 2 cut(s) 230, 3283
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 9 cut(s) 520, 533, 797, 1110, 1187, 1276, 2959, 3118, 3334
BstMAI GTCTC 5 cut(s) 95, 893, 1357, 2115, 3184
BstMBI GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
BstNI CCWGG 3 cut(s) 643, 767, 2466
BstSCI CCNGG 4 cut(s) 641, 765, 2464, 3288
BstSFI CTRYAG 3 cut(s) 546, 873, 1296
BstUI CGCG 2 cut(s) 230, 3283
BstV2I GAAGAC 1 cut(s) 2957
BstX2I RGATCY 3 cut(s) 1107, 2956, 3115
BstYI RGATCY 3 cut(s) 1107, 2956, 3115
BsuRI GGCC 3 cut(s) 1813, 2860, 3200
BtgI CCRYGG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 2364
BtsCI GGATG 4 cut(s) 603, 683, 918, 2820
BtsI GCAGTG 1 cut(s) 1664
BtsIMutI CAGTG 7 cut(s) 128, 1141, 1608, 1664, 2068, 2414, 2934
Cac8I GCNNGC 9 cut(s) 22, 261, 463, 553, 683, 786, 1288, 1815, 2783
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 4 cut(s) 514, 1447, 1497, 3401
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 3198
CseI GACGC 3 cut(s) 236, 2127, 3387
CsiI ACCWGGT 1 cut(s) 641
Csp6I GTAC 1 cut(s) 479
CviQI GTAC 1 cut(s) 479
DpnI GATC 9 cut(s) 519, 532, 796, 1109, 1186, 1275, 2958, 3117, 3333
DpnII GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
DrdI GACNNNNNNGTC 1 cut(s) 2570
DseDI GACNNNNNNGTC 1 cut(s) 2570
Eam1104I CTCTTC 5 cut(s) 63, 969, 1011, 1215, 2085
EarI CTCTTC 5 cut(s) 63, 969, 1011, 1215, 2085
Ecl136II GAGCTC 2 cut(s) 979, 1445
Eco130I CCWWGG 3 cut(s) 27, 2224, 3101
Eco147I AGGCCT 1 cut(s) 2860
Eco24I GRGCYC 2 cut(s) 981, 1447
Eco32I GATATC 1 cut(s) 1197
Eco53kI GAGCTC 2 cut(s) 979, 1445
Eco57I CTGAAG 3 cut(s) 201, 1052, 2951
Eco88I CYCGRG 5 cut(s) 47, 867, 1556, 2187, 2521
EcoICRI GAGCTC 2 cut(s) 979, 1445
EcoNI CCTNNNNNAGG 1 cut(s) 1322
EcoRII CCWGG 3 cut(s) 641, 765, 2464
EcoRV GATATC 1 cut(s) 1197
EcoT14I CCWWGG 3 cut(s) 27, 2224, 3101
EcoT22I ATGCAT 3 cut(s) 1046, 1057, 1096
EcoT38I GRGCYC 2 cut(s) 981, 1447
ErhI CCWWGG 3 cut(s) 27, 2224, 3101
Esp3I CGTCTC 2 cut(s) 2115, 3184
FalI AAGNNNNNCTT 2 cut(s) 2831, 2863
FaqI GGGAC 1 cut(s) 2981
FbaI TGATCA 1 cut(s) 3331
FblI GTMKAC 2 cut(s) 1032, 2562
FokI GGATG 4 cut(s) 610, 690, 925, 2827
FriOI GRGCYC 2 cut(s) 981, 1447
FspBI CTAG 8 cut(s) 462, 1370, 1514, 2075, 2394, 2637, 2954, 3041
GlaI GCGC 1 cut(s) 25
GsaI CCCAGC 2 cut(s) 1259, 1830
GsuI CTGGAG 2 cut(s) 542, 2076
HaeIII GGCC 3 cut(s) 1813, 2860, 3200
HapII CCGG 2 cut(s) 3173, 3290
HgaI GACGC 3 cut(s) 236, 2127, 3387
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 3177
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HincII GTYRAC 3 cut(s) 226, 1753, 2599
HindII GTYRAC 3 cut(s) 226, 1753, 2599
HindIII AAGCTT 7 cut(s) 113, 248, 257, 420, 782, 958, 2088
HpaI GTTAAC 2 cut(s) 1753, 2599
HpaII CCGG 2 cut(s) 3173, 3290
HphI GGTGA 6 cut(s) 416, 625, 857, 1156, 1609, 3080
Hpy166II GTNNAC 8 cut(s) 157, 226, 1033, 1753, 1834, 2563, 2599, 3384
Hpy8I GTNNAC 8 cut(s) 157, 226, 1033, 1753, 1834, 2563, 2599, 3384
Hpy99I CGWCG 3 cut(s) 2219, 2365, 2550
HpyAV CCTTC 3 cut(s) 1318, 2471, 3035
HpyCH4IV ACGT 9 cut(s) 312, 1400, 1843, 1896, 2165, 2363, 2908, 3177, 3276
HpySE526I ACGT 9 cut(s) 312, 1400, 1843, 1896, 2165, 2363, 2908, 3177, 3276
Hsp92I GRCGYC 1 cut(s) 3177
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 3331
KspAI GTTAAC 2 cut(s) 1753, 2599
Kzo9I GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
LguI GCTCTTC 3 cut(s) 969, 1011, 2085
LmnI GCTCC 3 cut(s) 36, 478, 1442
MabI ACCWGGT 1 cut(s) 641
MaeI CTAG 8 cut(s) 462, 1370, 1514, 2075, 2394, 2637, 2954, 3041
MaeII ACGT 9 cut(s) 312, 1400, 1843, 1896, 2165, 2363, 2908, 3177, 3276
MaeIII GTNAC 4 cut(s) 1858, 2793, 2949, 3131
MalI GATC 9 cut(s) 519, 532, 796, 1109, 1186, 1275, 2958, 3117, 3333
MboI GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
MfeI CAATTG 3 cut(s) 690, 1188, 2005
MflI RGATCY 3 cut(s) 1107, 2956, 3115
MhlI GDGCHC 3 cut(s) 981, 1447, 2522
MluI ACGCGT 1 cut(s) 228
MlyI GAGTC 5 cut(s) 422, 728, 2179, 2618, 2664
MmeI TCCRAC 3 cut(s) 428, 1990, 3080
Mph1103I ATGCAT 3 cut(s) 1046, 1057, 1096
MroXI GAANNNNTTC 4 cut(s) 1065, 1164, 1351, 1765
MslI CAYNNNNRTG 1 cut(s) 1652
MspA1I CMGCKG 1 cut(s) 1175
MspCI CTTAAG 1 cut(s) 1426
MspI CCGG 2 cut(s) 3173, 3290
MspR9I CCNGG 4 cut(s) 643, 767, 2466, 3290
MunI CAATTG 3 cut(s) 690, 1188, 2005
Mva1269I GAATGC 3 cut(s) 704, 1096, 2225
MvaI CCWGG 3 cut(s) 643, 767, 2466
MvnI CGCG 2 cut(s) 230, 3283
NciI CCSGG 1 cut(s) 3290
NcoI CCATGG 1 cut(s) 27
NdeII GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
NheI GCTAGC 1 cut(s) 461
NlaIV GGNNCC 4 cut(s) 177, 759, 2493, 2872
NmeAIII GCCGAG 3 cut(s) 326, 1978, 2899
NmuCI GTSAC 3 cut(s) 1858, 2793, 2949
NsiI ATGCAT 3 cut(s) 1046, 1057, 1096
NspV TTCGAA 1 cut(s) 3231
PaeR7I CTCGAG 4 cut(s) 47, 867, 1556, 2521
PagI TCATGA 4 cut(s) 514, 1447, 1497, 3401
PceI AGGCCT 1 cut(s) 2860
PciSI GCTCTTC 3 cut(s) 969, 1011, 2085
PcsI WCGNNNNNNNCGW 1 cut(s) 3237
PctI GAATGC 3 cut(s) 704, 1096, 2225
PdmI GAANNNNTTC 4 cut(s) 1065, 1164, 1351, 1765
PflFI GACNNNGTC 1 cut(s) 1244
PflMI CCANNNNNTGG 1 cut(s) 33
PleI GAGTC 5 cut(s) 421, 728, 2179, 2617, 2663
PpsI GAGTC 5 cut(s) 421, 728, 2179, 2617, 2663
PshBI ATTAAT 2 cut(s) 1232, 1911
PsiI TTATAA 1 cut(s) 1476
Psp124BI GAGCTC 2 cut(s) 981, 1447
Psp6I CCWGG 3 cut(s) 641, 765, 2464
PspFI CCCAGC 2 cut(s) 1255, 1826
PspGI CCWGG 3 cut(s) 641, 765, 2464
PspN4I GGNNCC 4 cut(s) 177, 759, 2493, 2872
PspPI GGNCC 1 cut(s) 3198
PspXI VCTCGAGB 2 cut(s) 867, 2521
PstI CTGCAG 2 cut(s) 550, 877
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 3 cut(s) 1107, 2956, 3115
PsyI GACNNNGTC 1 cut(s) 1244
RsaI GTAC 1 cut(s) 480
RsaNI GTAC 1 cut(s) 479
RseI CAYNNNNRTG 1 cut(s) 1652
SacI GAGCTC 2 cut(s) 981, 1447
SapI GCTCTTC 3 cut(s) 969, 1011, 2085
Sau3AI GATC 9 cut(s) 517, 530, 794, 1107, 1184, 1273, 2956, 3115, 3331
Sau96I GGNCC 1 cut(s) 3198
SchI GAGTC 5 cut(s) 422, 728, 2179, 2618, 2664
ScrFI CCNGG 4 cut(s) 643, 767, 2466, 3290
SduI GDGCHC 3 cut(s) 981, 1447, 2522
SexAI ACCWGGT 1 cut(s) 641
SfcI CTRYAG 3 cut(s) 546, 873, 1296
Sfr274I CTCGAG 4 cut(s) 47, 867, 1556, 2521
SfuI TTCGAA 1 cut(s) 3231
SlaI CTCGAG 4 cut(s) 47, 867, 1556, 2521
SmiMI CAYNNNNRTG 1 cut(s) 1652
SmlI CTYRAG 5 cut(s) 47, 867, 1426, 1556, 2521
SmoI CTYRAG 5 cut(s) 47, 867, 1426, 1556, 2521
SseBI AGGCCT 1 cut(s) 2860
SsiI CCGC 2 cut(s) 1175, 2511
SspI AATATT 1 cut(s) 2131
SspMI CTAG 8 cut(s) 462, 1370, 1514, 2075, 2394, 2637, 2954, 3041
SstI GAGCTC 2 cut(s) 981, 1447
StuI AGGCCT 1 cut(s) 2860
StyD4I CCNGG 4 cut(s) 641, 765, 2464, 3288
StyI CCWWGG 3 cut(s) 27, 2224, 3101
TaiI ACGT 9 cut(s) 315, 1403, 1846, 1899, 2168, 2366, 2911, 3180, 3279
TscAI CASTG 7 cut(s) 128, 1141, 1615, 1671, 2075, 2421, 2934
TseFI GTSAC 3 cut(s) 1858, 2793, 2949
Tsp45I GTSAC 3 cut(s) 1858, 2793, 2949
TspRI CASTG 7 cut(s) 128, 1141, 1615, 1671, 2075, 2421, 2934
Tth111I GACNNNGTC 1 cut(s) 1244
Van91I CCANNNNNTGG 1 cut(s) 33
Vha464I CTTAAG 1 cut(s) 1426
VspI ATTAAT 2 cut(s) 1232, 1911
XagI CCTNNNNNAGG 1 cut(s) 1322
XapI RAATTY 7 cut(s) 467, 1011, 1584, 1720, 1961, 2098, 2345
XcmI CCANNNNNNNNNTGG 1 cut(s) 1138
XhoI CTCGAG 4 cut(s) 47, 867, 1556, 2521
XmiI GTMKAC 2 cut(s) 1032, 2562
XmnI GAANNNNTTC 4 cut(s) 1065, 1164, 1351, 1765
XspI CTAG 8 cut(s) 462, 1370, 1514, 2075, 2394, 2637, 2954, 3041
ZraI GACGTC 1 cut(s) 3178
Zsp2I ATGCAT 3 cut(s) 1046, 1057, 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.