snRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20060 |
| fragaria_vesca | FvH4_4g05080 FvH4_4g05080 FvH4_4g05080 FvH4_4g05080 |
| malus_domestica | MD13G1224700.v1.1 MD16G1229900.v1.1 |
| prunus_persica | Prupe.3G104300_v2.0.a1 |
| pyrus_communis | pycom13g19830 pycom16g19170 |
| rosa_chinensis | RchiOBHm_Chr4g0396011 |
| rosa_laevigata | RLG00000009581 |
| rosa_multiflora | Rmu_sc0012989.1_g000013 Rmu_sc0015594.1_g000011 |
| rosa_roxburghii | Rroxscaffold_5G00340800 |
| rosa_rugosa | Rorug03G0352900 |
| rosa_samantha | Rh4BG063300 Rh4CG069900 Rh4CG070000 Rh4DG059900 |
| rosa_wichuraiana | Rw4G005230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2028 |
| Acc36I | ACCTGC | 1 cut(s) | 343 |
| AccBSI | CCGCTC | 1 cut(s) | 81 |
| AccI | GTMKAC | 1 cut(s) | 1027 |
| AccIII | TCCGGA | 1 cut(s) | 2802 |
| AciI | CCGC | 6 cut(s) | 61, 79, 180, 2518, 2672, 2965 |
| AclWI | GGATC | 3 cut(s) | 1383, 2788, 2851 |
| AcsI | RAATTY | 6 cut(s) | 607, 1831, 1970, 2315, 2772, 2975 |
| AcuI | CTGAAG | 2 cut(s) | 1539, 2658 |
| AdeI | CACNNNGTG | 1 cut(s) | 1654 |
| AfaI | GTAC | 8 cut(s) | 120, 290, 317, 483, 648, 2816, 3055, 3357 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 74, 633, 789, 1216, 1372, 1952, 2840 |
| AflII | CTTAAG | 1 cut(s) | 2158 |
| AflIII | ACRYGT | 1 cut(s) | 162 |
| AjnI | CCWGG | 4 cut(s) | 73, 477, 782, 3337 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1250, 1282 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 954, 986 |
| Alw26I | GTCTC | 7 cut(s) | 69, 224, 1206, 1955, 2084, 2266, 2735 |
| AlwI | GGATC | 3 cut(s) | 1383, 2788, 2851 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2082 |
| Ama87I | CYCGRG | 1 cut(s) | 1215 |
| Aor13HI | TCCGGA | 1 cut(s) | 2802 |
| AoxI | GGCC | 6 cut(s) | 76, 1775, 2122, 2403, 2752, 2831 |
| ApeKI | GCWGC | 7 cut(s) | 17, 592, 866, 1802, 1933, 2066, 3126 |
| ApoI | RAATTY | 6 cut(s) | 607, 1831, 1970, 2315, 2772, 2975 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 194 |
| AspS9I | GGNCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| AsuC2I | CCSGG | 2 cut(s) | 627, 2469 |
| AsuHPI | GGTGA | 7 cut(s) | 603, 946, 969, 1231, 1561, 1864, 2015 |
| AvaI | CYCGRG | 1 cut(s) | 1215 |
| AvaII | GGWCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| BaeGI | GKGCMC | 1 cut(s) | 445 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1074, 1107 |
| BbvCI | CCTCAGC | 1 cut(s) | 183 |
| BbvI | GCAGC | 7 cut(s) | 29, 579, 878, 1814, 1920, 2078, 3138 |
| BccI | CCATC | 8 cut(s) | 22, 1171, 1219, 1409, 1532, 2139, 2744, 2876 |
| BciT130I | CCWGG | 4 cut(s) | 75, 479, 784, 3339 |
| BcnI | CCSGG | 2 cut(s) | 627, 2469 |
| BcoDI | GTCTC | 7 cut(s) | 69, 224, 1206, 1955, 2084, 2266, 2735 |
| BfmI | CTRYAG | 4 cut(s) | 998, 1290, 2064, 2291 |
| BfrI | CTTAAG | 1 cut(s) | 2158 |
| BfuAI | ACCTGC | 1 cut(s) | 343 |
| BglII | AGATCT | 1 cut(s) | 2551 |
| BisI | GCNGC | 8 cut(s) | 18, 79, 593, 867, 1803, 1934, 2067, 3127 |
| BlsI | GCNGC | 8 cut(s) | 19, 80, 594, 868, 1804, 1935, 2068, 3128 |
| BmcAI | AGTACT | 1 cut(s) | 2816 |
| Bme1390I | CCNGG | 6 cut(s) | 75, 479, 627, 784, 2469, 3339 |
| Bme18I | GGWCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| BmeT110I | CYCGRG | 1 cut(s) | 1215 |
| BmgT120I | GGNCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| BmiI | GGNNCC | 2 cut(s) | 3015, 3320 |
| BmrFI | CCNGG | 6 cut(s) | 75, 479, 627, 784, 2469, 3339 |
| BmsI | GCATC | 8 cut(s) | 533, 579, 866, 1106, 1435, 1743, 2659, 2778 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2380, 2412, 2637, 2669, 2717, 2749 |
| BpmI | CTGGAG | 5 cut(s) | 132, 261, 533, 663, 3032 |
| Bpu10I | CCTNAGC | 1 cut(s) | 183 |
| BpuEI | CTTGAG | 1 cut(s) | 2848 |
| BpuMI | CCSGG | 2 cut(s) | 627, 2469 |
| BsaAI | YACGTR | 1 cut(s) | 1025 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1359, 2792 |
| BsaI | GGTCTC | 2 cut(s) | 69, 2735 |
| BsaJI | CCNNGG | 2 cut(s) | 2745, 2839 |
| BsaWI | WCCGGW | 2 cut(s) | 291, 2802 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 954, 984, 2169, 2199 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 74, 633, 789, 1216, 1372, 1952, 2840 |
| Bse1I | ACTGG | 5 cut(s) | 149, 579, 1262, 2960, 3257 |
| Bse3DI | GCAATG | 4 cut(s) | 681, 1077, 2264, 2391 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1359, 2792 |
| BseAI | TCCGGA | 1 cut(s) | 2802 |
| BseBI | CCWGG | 4 cut(s) | 75, 479, 784, 3339 |
| BseDI | CCNNGG | 2 cut(s) | 2745, 2839 |
| BseGI | GGATG | 7 cut(s) | 403, 548, 1030, 1450, 1758, 2755, 2793 |
| BseJI | GATNNNNATC | 2 cut(s) | 1359, 2792 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 74, 633, 789, 1216, 1372, 1952, 2840 |
| BseMI | GCAATG | 4 cut(s) | 681, 1077, 2264, 2391 |
| BseMII | CTCAG | 4 cut(s) | 174, 330, 1522, 2668 |
| BseNI | ACTGG | 5 cut(s) | 149, 579, 1262, 2960, 3257 |
| BseRI | GAGGAG | 3 cut(s) | 200, 336, 2738 |
| BseSI | GKGCMC | 1 cut(s) | 445 |
| BseXI | GCAGC | 7 cut(s) | 29, 579, 878, 1814, 1920, 2078, 3138 |
| BseYI | CCCAGC | 2 cut(s) | 2227, 3049 |
| BsgI | GTGCAG | 2 cut(s) | 371, 2735 |
| BshFI | GGCC | 6 cut(s) | 78, 1777, 2124, 2405, 2754, 2833 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1215 |
| BsiSI | CCGG | 5 cut(s) | 292, 627, 2468, 2688, 2803 |
| BslFI | GGGAC | 1 cut(s) | 1807 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 74, 633, 789, 1216, 1372, 1952, 2840 |
| BsmAI | GTCTC | 7 cut(s) | 69, 224, 1206, 1955, 2084, 2266, 2735 |
| BsmBI | CGTCTC | 1 cut(s) | 224 |
| BsmFI | GGGAC | 1 cut(s) | 1807 |
| BsmI | GAATGC | 2 cut(s) | 1192, 3128 |
| BsnI | GGCC | 6 cut(s) | 78, 1777, 2124, 2405, 2754, 2833 |
| Bso31I | GGTCTC | 2 cut(s) | 69, 2735 |
| BsoBI | CYCGRG | 1 cut(s) | 1215 |
| Bsp1286I | GDGCHC | 1 cut(s) | 445 |
| Bsp13I | TCCGGA | 1 cut(s) | 2802 |
| Bsp1407I | TGTACA | 1 cut(s) | 3355 |
| Bsp143I | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| BspACI | CCGC | 6 cut(s) | 61, 79, 180, 2518, 2672, 2965 |
| BspANI | GGCC | 6 cut(s) | 78, 1777, 2124, 2405, 2754, 2833 |
| BspCNI | CTCAG | 4 cut(s) | 175, 331, 1521, 2667 |
| BspEI | TCCGGA | 1 cut(s) | 2802 |
| BspHI | TCATGA | 1 cut(s) | 1456 |
| BspLI | GGNNCC | 2 cut(s) | 3015, 3320 |
| BspMAI | CTGCAG | 3 cut(s) | 1002, 2068, 2295 |
| BspMI | ACCTGC | 1 cut(s) | 343 |
| BspPI | GGATC | 3 cut(s) | 1383, 2788, 2851 |
| BspQI | GCTCTTC | 2 cut(s) | 200, 2092 |
| BspTI | CTTAAG | 1 cut(s) | 2158 |
| BspTNI | GGTCTC | 2 cut(s) | 69, 2735 |
| BsrBI | CCGCTC | 1 cut(s) | 81 |
| BsrDI | GCAATG | 4 cut(s) | 681, 1077, 2264, 2391 |
| BsrGI | TGTACA | 1 cut(s) | 3355 |
| BsrI | ACTGG | 5 cut(s) | 149, 579, 1262, 2960, 3257 |
| BssECI | CCNNGG | 2 cut(s) | 2745, 2839 |
| BssMI | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| BssNAI | GTATAC | 1 cut(s) | 1028 |
| BssT1I | CCWWGG | 2 cut(s) | 2745, 2839 |
| Bst1107I | GTATAC | 1 cut(s) | 1028 |
| Bst2UI | CCWGG | 4 cut(s) | 75, 479, 784, 3339 |
| Bst4CI | ACNGT | 7 cut(s) | 123, 392, 2078, 2531, 2853, 2984, 3355 |
| Bst6I | CTCTTC | 5 cut(s) | 200, 1209, 1704, 2092, 2294 |
| BstAFI | CTTAAG | 1 cut(s) | 2158 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 449, 692, 1006 |
| BstAUI | TGTACA | 1 cut(s) | 3355 |
| BstBAI | YACGTR | 1 cut(s) | 1025 |
| BstC8I | GCNNGC | 7 cut(s) | 83, 810, 881, 953, 1779, 2756, 3236 |
| BstDEI | CTNAG | 7 cut(s) | 183, 339, 872, 1065, 1508, 1746, 2654 |
| BstF5I | GGATG | 7 cut(s) | 403, 548, 1030, 1450, 1758, 2755, 2793 |
| BstKTI | GATC | 9 cut(s) | 1240, 1245, 1324, 1378, 1873, 2554, 2609, 2796, 2846 |
| BstMAI | GTCTC | 7 cut(s) | 69, 224, 1206, 1955, 2084, 2266, 2735 |
| BstMBI | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 358, 449, 692, 1006, 1942, 2524 |
| BstNI | CCWGG | 4 cut(s) | 75, 479, 784, 3339 |
| BstNSI | RCATGY | 7 cut(s) | 166, 655, 812, 955, 1123, 2045, 2625 |
| BstSCI | CCNGG | 6 cut(s) | 73, 477, 625, 782, 2467, 3337 |
| BstSFI | CTRYAG | 4 cut(s) | 998, 1290, 2064, 2291 |
| BstSLI | GKGCMC | 1 cut(s) | 445 |
| BstSNI | TACGTA | 1 cut(s) | 1025 |
| BstV1I | GCAGC | 7 cut(s) | 29, 579, 878, 1814, 1920, 2078, 3138 |
| BstX2I | RGATCY | 2 cut(s) | 2551, 2793 |
| BstYI | RGATCY | 2 cut(s) | 2551, 2793 |
| BstZ17I | GTATAC | 1 cut(s) | 1028 |
| BsuRI | GGCC | 6 cut(s) | 78, 1777, 2124, 2405, 2754, 2833 |
| BtsCI | GGATG | 7 cut(s) | 403, 548, 1030, 1450, 1758, 2755, 2793 |
| BtsI | GCAGTG | 2 cut(s) | 995, 1824 |
| BtsIMutI | CAGTG | 6 cut(s) | 397, 572, 995, 1516, 1824, 2967 |
| BveI | ACCTGC | 1 cut(s) | 343 |
| Cac8I | GCNNGC | 7 cut(s) | 83, 810, 881, 953, 1779, 2756, 3236 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2082 |
| CciI | TCATGA | 1 cut(s) | 1456 |
| Cfr13I | GGNCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| CseI | GACGC | 2 cut(s) | 206, 513 |
| CsiI | ACCWGGT | 1 cut(s) | 477 |
| Csp6I | GTAC | 8 cut(s) | 119, 289, 316, 482, 647, 2815, 3054, 3356 |
| CviQI | GTAC | 8 cut(s) | 119, 289, 316, 482, 647, 2815, 3054, 3356 |
| DdeI | CTNAG | 7 cut(s) | 183, 339, 872, 1065, 1508, 1746, 2654 |
| DpnI | GATC | 9 cut(s) | 1239, 1244, 1323, 1377, 1872, 2553, 2608, 2795, 2845 |
| DpnII | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| DraI | TTTAAA | 1 cut(s) | 921 |
| DraIII | CACNNNGTG | 1 cut(s) | 1654 |
| Eam1104I | CTCTTC | 5 cut(s) | 200, 1209, 1704, 2092, 2294 |
| EarI | CTCTTC | 5 cut(s) | 200, 1209, 1704, 2092, 2294 |
| Eco105I | TACGTA | 1 cut(s) | 1025 |
| Eco130I | CCWWGG | 2 cut(s) | 2745, 2839 |
| Eco147I | AGGCCT | 1 cut(s) | 2833 |
| Eco31I | GGTCTC | 2 cut(s) | 69, 2735 |
| Eco32I | GATATC | 1 cut(s) | 2286 |
| Eco47I | GGWCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| Eco57I | CTGAAG | 2 cut(s) | 1539, 2658 |
| Eco88I | CYCGRG | 1 cut(s) | 1215 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3172 |
| EcoRI | GAATTC | 1 cut(s) | 607 |
| EcoRII | CCWGG | 4 cut(s) | 73, 477, 782, 3337 |
| EcoRV | GATATC | 1 cut(s) | 2286 |
| EcoT14I | CCWWGG | 2 cut(s) | 2745, 2839 |
| EcoT22I | ATGCAT | 1 cut(s) | 1603 |
| ErhI | CCWWGG | 2 cut(s) | 2745, 2839 |
| Esp3I | CGTCTC | 1 cut(s) | 224 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2804, 2836 |
| FaqI | GGGAC | 1 cut(s) | 1807 |
| FauI | CCCGC | 1 cut(s) | 187 |
| FauNDI | CATATG | 2 cut(s) | 600, 1798 |
| FblI | GTMKAC | 1 cut(s) | 1027 |
| Fnu4HI | GCNGC | 8 cut(s) | 18, 79, 593, 867, 1803, 1934, 2067, 3127 |
| FokI | GGATG | 7 cut(s) | 410, 555, 1017, 1457, 1765, 2762, 2800 |
| Fsp4HI | GCNGC | 8 cut(s) | 18, 79, 593, 867, 1803, 1934, 2067, 3127 |
| GluI | GCNGC | 8 cut(s) | 18, 79, 593, 867, 1803, 1934, 2067, 3127 |
| GsaI | CCCAGC | 2 cut(s) | 2231, 3053 |
| GsuI | CTGGAG | 5 cut(s) | 132, 261, 533, 663, 3032 |
| HaeIII | GGCC | 6 cut(s) | 78, 1777, 2124, 2405, 2754, 2833 |
| HapII | CCGG | 5 cut(s) | 292, 627, 2468, 2688, 2803 |
| HgaI | GACGC | 2 cut(s) | 206, 513 |
| HincII | GTYRAC | 3 cut(s) | 2344, 2446, 2863 |
| HindII | GTYRAC | 3 cut(s) | 2344, 2446, 2863 |
| HindIII | AAGCTT | 1 cut(s) | 3063 |
| HpaI | GTTAAC | 1 cut(s) | 2446 |
| HpaII | CCGG | 5 cut(s) | 292, 627, 2468, 2688, 2803 |
| HphI | GGTGA | 7 cut(s) | 603, 946, 969, 1231, 1561, 1864, 2015 |
| Hpy166II | GTNNAC | 7 cut(s) | 937, 1028, 2344, 2446, 2863, 2999, 3029 |
| Hpy8I | GTNNAC | 7 cut(s) | 937, 1028, 2344, 2446, 2863, 2999, 3029 |
| HpyAV | CCTTC | 5 cut(s) | 46, 265, 2029, 2939, 3147 |
| HpyCH4III | ACNGT | 7 cut(s) | 123, 392, 2078, 2531, 2853, 2984, 3355 |
| HpyCH4IV | ACGT | 2 cut(s) | 1024, 2451 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 358, 449, 692, 1006, 1942, 2524 |
| HpyF3I | CTNAG | 7 cut(s) | 183, 339, 872, 1065, 1508, 1746, 2654 |
| HpySE526I | ACGT | 2 cut(s) | 1024, 2451 |
| Kpn2I | TCCGGA | 1 cut(s) | 2802 |
| KspAI | GTTAAC | 1 cut(s) | 2446 |
| Kzo9I | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| LguI | GCTCTTC | 2 cut(s) | 200, 2092 |
| LmnI | GCTCC | 5 cut(s) | 36, 1814, 2177, 3013, 3040 |
| Lsp1109I | GCAGC | 7 cut(s) | 29, 579, 878, 1814, 1920, 2078, 3138 |
| LweI | GCATC | 8 cut(s) | 533, 579, 866, 1106, 1435, 1743, 2659, 2778 |
| MabI | ACCWGGT | 1 cut(s) | 477 |
| MaeII | ACGT | 2 cut(s) | 1024, 2451 |
| MaeIII | GTNAC | 9 cut(s) | 975, 1580, 1646, 2113, 2169, 2326, 2531, 2740, 2944 |
| MalI | GATC | 9 cut(s) | 1239, 1244, 1323, 1377, 1872, 2553, 2608, 2795, 2845 |
| MbiI | CCGCTC | 1 cut(s) | 81 |
| MboI | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| MflI | RGATCY | 2 cut(s) | 2551, 2793 |
| MhlI | GDGCHC | 1 cut(s) | 445 |
| MlyI | GAGTC | 6 cut(s) | 252, 1190, 1208, 1677, 2115, 2800 |
| MmeI | TCCRAC | 3 cut(s) | 646, 711, 3296 |
| Mph1103I | ATGCAT | 1 cut(s) | 1603 |
| MroI | TCCGGA | 1 cut(s) | 2802 |
| MroXI | GAANNNNTTC | 1 cut(s) | 194 |
| MslI | CAYNNNNRTG | 6 cut(s) | 874, 1175, 1419, 1461, 1662, 3190 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MspCI | CTTAAG | 1 cut(s) | 2158 |
| MspI | CCGG | 5 cut(s) | 292, 627, 2468, 2688, 2803 |
| MspR9I | CCNGG | 6 cut(s) | 75, 479, 627, 784, 2469, 3339 |
| Mva1269I | GAATGC | 2 cut(s) | 1192, 3128 |
| MvaI | CCWGG | 4 cut(s) | 75, 479, 784, 3339 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 358, 449, 692, 1006, 1942, 2524 |
| NciI | CCSGG | 2 cut(s) | 627, 2469 |
| NdeI | CATATG | 2 cut(s) | 600, 1798 |
| NdeII | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| NlaIV | GGNNCC | 2 cut(s) | 3015, 3320 |
| NmuCI | GTSAC | 4 cut(s) | 975, 1646, 2113, 2944 |
| NsiI | ATGCAT | 1 cut(s) | 1603 |
| NspI | RCATGY | 7 cut(s) | 166, 655, 812, 955, 1123, 2045, 2625 |
| PaeI | GCATGC | 2 cut(s) | 812, 955 |
| PagI | TCATGA | 1 cut(s) | 1456 |
| PceI | AGGCCT | 1 cut(s) | 2833 |
| PciI | ACATGT | 1 cut(s) | 162 |
| PciSI | GCTCTTC | 2 cut(s) | 200, 2092 |
| PctI | GAATGC | 2 cut(s) | 1192, 3128 |
| PdmI | GAANNNNTTC | 1 cut(s) | 194 |
| PfeI | GAWTC | 9 cut(s) | 236, 793, 1058, 1286, 1555, 2018, 2613, 3273, 3334 |
| PflFI | GACNNNGTC | 1 cut(s) | 1421 |
| PfoI | TCCNGGA | 2 cut(s) | 2467, 3337 |
| PkrI | GCNGC | 8 cut(s) | 19, 80, 594, 868, 1804, 1935, 2068, 3128 |
| PleI | GAGTC | 6 cut(s) | 252, 1189, 1207, 1677, 2114, 2800 |
| PpsI | GAGTC | 6 cut(s) | 252, 1189, 1207, 1677, 2114, 2800 |
| Ppu21I | YACGTR | 1 cut(s) | 1025 |
| PpuMI | RGGWCCY | 1 cut(s) | 3172 |
| PscI | ACATGT | 1 cut(s) | 162 |
| PsiI | TTATAA | 1 cut(s) | 2028 |
| Psp5II | RGGWCCY | 1 cut(s) | 3172 |
| Psp6I | CCWGG | 4 cut(s) | 73, 477, 782, 3337 |
| PspFI | CCCAGC | 2 cut(s) | 2227, 3049 |
| PspGI | CCWGG | 4 cut(s) | 73, 477, 782, 3337 |
| PspN4I | GGNNCC | 2 cut(s) | 3015, 3320 |
| PspPI | GGNCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| PspPPI | RGGWCCY | 1 cut(s) | 3172 |
| PstI | CTGCAG | 3 cut(s) | 1002, 2068, 2295 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2082 |
| PsuI | RGATCY | 2 cut(s) | 2551, 2793 |
| PsyI | GACNNNGTC | 1 cut(s) | 1421 |
| RsaI | GTAC | 8 cut(s) | 120, 290, 317, 483, 648, 2816, 3055, 3357 |
| RsaNI | GTAC | 8 cut(s) | 119, 289, 316, 482, 647, 2815, 3054, 3356 |
| RseI | CAYNNNNRTG | 6 cut(s) | 874, 1175, 1419, 1461, 1662, 3190 |
| SapI | GCTCTTC | 2 cut(s) | 200, 2092 |
| SatI | GCNGC | 8 cut(s) | 18, 79, 593, 867, 1803, 1934, 2067, 3127 |
| Sau3AI | GATC | 9 cut(s) | 1237, 1242, 1321, 1375, 1870, 2551, 2606, 2793, 2843 |
| Sau96I | GGNCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| ScaI | AGTACT | 1 cut(s) | 2816 |
| SchI | GAGTC | 6 cut(s) | 252, 1190, 1208, 1677, 2115, 2800 |
| ScrFI | CCNGG | 6 cut(s) | 75, 479, 627, 784, 2469, 3339 |
| SduI | GDGCHC | 1 cut(s) | 445 |
| SexAI | ACCWGGT | 1 cut(s) | 477 |
| SfaNI | GCATC | 8 cut(s) | 533, 579, 866, 1106, 1435, 1743, 2659, 2778 |
| SfcI | CTRYAG | 4 cut(s) | 998, 1290, 2064, 2291 |
| SinI | GGWCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 874, 1175, 1419, 1461, 1662, 3190 |
| SmlI | CTYRAG | 2 cut(s) | 2158, 2827 |
| SmoI | CTYRAG | 2 cut(s) | 2158, 2827 |
| SnaBI | TACGTA | 1 cut(s) | 1025 |
| SphI | GCATGC | 2 cut(s) | 812, 955 |
| SseBI | AGGCCT | 1 cut(s) | 2833 |
| SsiI | CCGC | 6 cut(s) | 61, 79, 180, 2518, 2672, 2965 |
| SspI | AATATT | 2 cut(s) | 1383, 2200 |
| StuI | AGGCCT | 1 cut(s) | 2833 |
| StyD4I | CCNGG | 6 cut(s) | 73, 477, 625, 782, 2467, 3337 |
| StyI | CCWWGG | 2 cut(s) | 2745, 2839 |
| TaaI | ACNGT | 7 cut(s) | 123, 392, 2078, 2531, 2853, 2984, 3355 |
| TaiI | ACGT | 2 cut(s) | 1027, 2454 |
| TaqI | TCGA | 7 cut(s) | 168, 332, 1342, 1406, 1939, 2109, 2605 |
| TaqII | GACCGA | 1 cut(s) | 95 |
| TatI | WGTACW | 3 cut(s) | 315, 2814, 3355 |
| TauI | GCSGC | 1 cut(s) | 81 |
| TfiI | GAWTC | 9 cut(s) | 236, 793, 1058, 1286, 1555, 2018, 2613, 3273, 3334 |
| TscAI | CASTG | 6 cut(s) | 397, 579, 1002, 1516, 1831, 2967 |
| TseFI | GTSAC | 4 cut(s) | 975, 1646, 2113, 2944 |
| TseI | GCWGC | 7 cut(s) | 17, 592, 866, 1802, 1933, 2066, 3126 |
| Tsp45I | GTSAC | 4 cut(s) | 975, 1646, 2113, 2944 |
| TspGWI | ACGGA | 3 cut(s) | 322, 884, 1457 |
| TspRI | CASTG | 6 cut(s) | 397, 579, 1002, 1516, 1831, 2967 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1421 |
| Vha464I | CTTAAG | 1 cut(s) | 2158 |
| VpaK11BI | GGWCC | 5 cut(s) | 107, 2465, 3172, 3318, 3341 |
| XapI | RAATTY | 6 cut(s) | 607, 1831, 1970, 2315, 2772, 2975 |
| XceI | RCATGY | 7 cut(s) | 166, 655, 812, 955, 1123, 2045, 2625 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1135 |
| XmiI | GTMKAC | 1 cut(s) | 1027 |
| XmnI | GAANNNNTTC | 1 cut(s) | 194 |
| ZrmI | AGTACT | 1 cut(s) | 2816 |
| Zsp2I | ATGCAT | 1 cut(s) | 1603 |