Rh4CG069900

snRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0010119
Physical Location & Seq
Forward (+)
12980855 .. 12981908
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG069900.1

Sequence Viewer

Length: 849 bp
ATGGAGAGGAACTCGGCAGTGTGTGTGATGGAATGGAGCATAGAGCTAGAGAAGGCTTTGCGGTCTCCAAAGCCAGGCCGCTCGCTTGAAGCCATATCGGAAATCGGTCCAAAATTGGTACGGTTAAGCACAGAACCAGAGTGTTCTCCAGTTATCTACCACATGTTCGACCTAATTCCCGCTGAGGAGAAGCTCTTCTCCAATGCTATTGTTCTGCGTCTCGCAAGTGCGTTTGAATCTGGAGATCAGCACACAAGGCTCTGTGTTTTGAAGGCATTTTTGTATGAGTACCGGAACAGAAACAGACGGAAAGAGTACAGAGGAGTTTTATCGAAAACTGAGGCTCCTGTGCGGGTAGAGCTTCTGGGGAGAGTTAAGGTTGTGTTTGACAGTGGGGATGTTGAAGATAGGGCTTTGGCTTTGGGTCTATTCGGCTGTTGGGCACATTTTGCTAAAGAAAGTCCTAGCATACGATACCTGGTACTCTCTAGTATGGTTTCGCCTCACATTCTGGAGGTAAAAGCGTCCTTATTTGCGGCAGGATGCTTTGCTGAATTATCAGAGGACTTTGCACTGGTTGTCTTGGAGATGCTGCTTCATATGATGAATTCACCAGACACATTACCCGGTATAAGGTTGGCTGGAGTACGCATGTTTGCCAAAGTTGGATTTTCACATTCCATTGCAAATAATGCTTACAAGACAGGTGTGAAGTTGTTATTAGAGTGGTCGGAGAAGGATTATCAGGTTGCCATGCTGGTTTCCCTTTCCAAACTTGCTTCCAGGCTGATTTGCTTTTATTGTTTCTTAACAAAGAAAAAACTTATCATCTTCGGGGGGCAGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.7

Weight (kDa)

8.77

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
INTS7_N PF24436 66 - 262 1.2e-24 Integrator complex subunit 7, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 5 cut(s) 61, 79, 180, 352, 536
AcsI RAATTY 1 cut(s) 607
AfaI GTAC 5 cut(s) 120, 290, 317, 483, 648
AfiI CCNNNNNNNGG 2 cut(s) 74, 633
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 4 cut(s) 89, 236, 271, 404
AjnI CCWGG 3 cut(s) 73, 477, 782
AluBI AGCT 3 cut(s) 46, 193, 361
AluI AGCT 3 cut(s) 46, 193, 361
Alw26I GTCTC 2 cut(s) 69, 224
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 592, 841
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 1 cut(s) 603
AvaII GGWCC 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 579
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 3 cut(s) 75, 479, 784
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 69, 224
BfaI CTAG 3 cut(s) 47, 465, 489
BisI GCNGC 4 cut(s) 79, 537, 593, 842
BlsI GCNGC 4 cut(s) 80, 538, 594, 843
Bme1390I CCNGG 4 cut(s) 75, 479, 627, 784
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 4 cut(s) 75, 479, 627, 784
BmsI GCATC 2 cut(s) 533, 579
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 4 cut(s) 132, 261, 533, 663
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 633
Bse1I ACTGG 2 cut(s) 149, 579
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 3 cut(s) 75, 479, 784
BseGI GGATG 2 cut(s) 403, 548
BseLI CCNNNNNNNGG 2 cut(s) 74, 633
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 2 cut(s) 174, 330
BseNI ACTGG 2 cut(s) 149, 579
BseRI GAGGAG 2 cut(s) 200, 336
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 1 cut(s) 579
BshFI GGCC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 292, 627
BslI CCNNNNNNNGG 2 cut(s) 74, 633
BsmAI GTCTC 2 cut(s) 69, 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 5 cut(s) 61, 79, 180, 352, 536
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 175, 331
BspLI GGNNCC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 681
BsrI ACTGG 2 cut(s) 149, 579
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 3 cut(s) 75, 479, 784
Bst4CI ACNGT 2 cut(s) 123, 392
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 449, 692
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 183, 339
BstF5I GGATG 2 cut(s) 403, 548
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 69, 224
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 4 cut(s) 256, 358, 449, 692
BstNI CCWGG 3 cut(s) 75, 479, 784
BstNSI RCATGY 2 cut(s) 166, 655
BstSCI CCNGG 4 cut(s) 73, 477, 625, 782
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 579
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 403, 548
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 3 cut(s) 24, 397, 572
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 2 cut(s) 206, 513
CsiI ACCWGGT 1 cut(s) 477
Csp6I GTAC 5 cut(s) 119, 289, 316, 482, 647
CviAII CATG 3 cut(s) 163, 652, 754
CviQI GTAC 5 cut(s) 119, 289, 316, 482, 647
DdeI CTNAG 2 cut(s) 183, 339
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 3 cut(s) 73, 477, 782
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 3 cut(s) 166, 655, 757
FatI CATG 3 cut(s) 162, 651, 753
FauI CCCGC 2 cut(s) 187, 345
FauNDI CATATG 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 79, 537, 593, 842
FokI GGATG 2 cut(s) 410, 555
Fsp4HI GCNGC 4 cut(s) 79, 537, 593, 842
FspBI CTAG 3 cut(s) 47, 465, 489
GluI GCNGC 4 cut(s) 79, 537, 593, 842
GsuI CTGGAG 4 cut(s) 132, 261, 533, 663
HaeIII GGCC 1 cut(s) 78
HapII CCGG 2 cut(s) 292, 627
HgaI GACGC 2 cut(s) 206, 513
Hin1II CATG 3 cut(s) 166, 655, 757
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 292, 627
HphI GGTGA 1 cut(s) 603
Hpy188I TCNGA 3 cut(s) 100, 562, 733
Hpy188III TCNNGA 2 cut(s) 240, 512
HpyAV CCTTC 3 cut(s) 46, 265, 730
HpyCH4III ACNGT 2 cut(s) 123, 392
HpyCH4V TGCA 2 cut(s) 572, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 358, 449, 692
HpyF3I CTNAG 2 cut(s) 183, 339
Hsp92II CATG 3 cut(s) 166, 655, 757
Kzo9I GATC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 36, 349
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 2 cut(s) 533, 579
MabI ACCWGGT 1 cut(s) 477
MaeI CTAG 3 cut(s) 47, 465, 489
MalI GATC 1 cut(s) 246
MbiI CCGCTC 1 cut(s) 81
MboI GATC 1 cut(s) 244
MboII GAAGA 3 cut(s) 187, 416, 823
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 4 cut(s) 113, 174, 554, 607
MmeI TCCRAC 2 cut(s) 646, 711
MnlI CCTC 6 cut(s) 178, 314, 334, 508, 513, 556
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 3 cut(s) 125, 375, 809
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 2 cut(s) 292, 627
MspR9I CCNGG 4 cut(s) 75, 479, 627, 784
MvaI CCWGG 3 cut(s) 75, 479, 784
MwoI GCNNNNNNNGC 4 cut(s) 256, 358, 449, 692
NciI CCSGG 1 cut(s) 627
NdeI CATATG 1 cut(s) 600
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 166, 655, 757
NlaIV GGNNCC 1 cut(s) 345
NspI RCATGY 2 cut(s) 166, 655
PciI ACATGT 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 80, 538, 594, 843
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 3 cut(s) 73, 477, 782
PspGI CCWGG 3 cut(s) 73, 477, 782
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 5 cut(s) 120, 290, 317, 483, 648
RsaNI GTAC 5 cut(s) 119, 289, 316, 482, 647
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 125, 375, 809
SatI GCNGC 4 cut(s) 79, 537, 593, 842
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 107
ScrFI CCNGG 4 cut(s) 75, 479, 627, 784
SduI GDGCHC 1 cut(s) 445
SexAI ACCWGGT 1 cut(s) 477
SfaNI GCATC 2 cut(s) 533, 579
SinI GGWCC 1 cut(s) 107
Sse9I AATT 4 cut(s) 113, 174, 554, 607
SsiI CCGC 5 cut(s) 61, 79, 180, 352, 536
SspMI CTAG 3 cut(s) 47, 465, 489
StyD4I CCNGG 4 cut(s) 73, 477, 625, 782
TaaI ACNGT 2 cut(s) 123, 392
TaqI TCGA 2 cut(s) 168, 332
TaqII GACCGA 1 cut(s) 95
TasI AATT 4 cut(s) 113, 174, 554, 607
TatI WGTACW 1 cut(s) 315
TauI GCSGC 2 cut(s) 81, 539
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 125, 375, 809
Tru9I TTAA 3 cut(s) 125, 375, 809
TscAI CASTG 3 cut(s) 24, 397, 579
TseI GCWGC 2 cut(s) 592, 841
TspDTI ATGAA 2 cut(s) 587, 620
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 3 cut(s) 24, 397, 579
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 607
XceI RCATGY 2 cut(s) 166, 655
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 3 cut(s) 47, 465, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.