Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007186

Physical Location & Seq

Genomic Coordinates Forward (+)

11004503 .. 11006968

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20380.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAGGACCAGCTGGTGTGTCATGGTTGTAGGAATTTATTGATGTATCCTAGAGGAGCATCTAATGTGCGTTGTGCGTTATGTAACACTATCAACATGGTTCCTCCTCCTCCTCCACCTCACGACATGGCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTATACGCGTGGGGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAGCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCAATTGTGGGCATTGTCGGACGACCCTCATGTATCCTTACGGTGCATCATCCGTCAAATGCGCTGTTTGTCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACTTCAACACCACCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTGGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

184

Amino Acids

19.56

Weight (kDa)

8.81

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	12 - 36	7.7e-14	LSD1 zinc finger
zf-LSD1	PF06943	53 - 76	4.9e-12	LSD1 zinc finger
zf-LSD1	PF06943	100 - 124	2.9e-14	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380
malus_domestica	MD05G1263500.v1.1 MD10G1241200.v1.1
prunus_persica	Prupe.4G102000_v2.0.a1
pyrus_communis	pycom05g24750 pycom10g20220
rosa_chinensis	RchiOBHm_Chr5g0018361
rosa_laevigata	RLG00000032355
rosa_multiflora	Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059380
rosa_rugosa	Rorug05G0041800.1
rosa_samantha	Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100
rosa_wichuraiana	Rw5G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	273
Acc65I	GGTACC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	1 cut(s)	175
AciI	CCGC	1 cut(s)	504
AclI	AACGTT	1 cut(s)	363
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	1 cut(s)	387
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	444
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	2 cut(s)	13, 419
AluI	AGCT	2 cut(s)	13, 419
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	34
Asp718I	GGTACC	1 cut(s)	385
AspLEI	GCGC	3 cut(s)	232, 274, 341
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciVI	GTATCC	2 cut(s)	57, 321
BfaI	CTAG	2 cut(s)	51, 183
BfuI	GTATCC	2 cut(s)	57, 321
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	102, 387
BmsI	GCATC	3 cut(s)	68, 185, 332
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	2 cut(s)	382, 526
BseGI	GGATG	1 cut(s)	326
BseMI	GCAATG	2 cut(s)	382, 526
BseMII	CTCAG	1 cut(s)	470
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	4 cut(s)	69, 96, 99, 102
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	406
BshNI	GGYRCC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	102, 387
BspT107I	GGYRCC	1 cut(s)	385
BsrDI	GCAATG	2 cut(s)	382, 526
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	402
BssMI	GATC	1 cut(s)	276
BssNAI	GTATAC	1 cut(s)	171
Bst1107I	GTATAC	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	320, 469
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	3 cut(s)	232, 274, 341
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 195
BstUI	CGCG	1 cut(s)	175
BstZ17I	GTATAC	1 cut(s)	171
BsuI	GTATCC	2 cut(s)	57, 321
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	3 cut(s)	232, 274, 341
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	6 cut(s)	23, 97, 127, 251, 307, 487
CviJI	RGCY	4 cut(s)	13, 182, 406, 419
CviKI_1	RGCY	4 cut(s)	13, 182, 406, 419
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	7
FaeI	CATG	6 cut(s)	26, 100, 130, 254, 310, 490
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	6 cut(s)	22, 96, 126, 250, 306, 486
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	1 cut(s)	313
FspBI	CTAG	2 cut(s)	51, 183
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	3 cut(s)	231, 273, 340
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	3 cut(s)	232, 274, 341
Hin1II	CATG	6 cut(s)	26, 100, 130, 254, 310, 490
Hin6I	GCGC	3 cut(s)	230, 272, 339
HinP1I	GCGC	3 cut(s)	230, 272, 339
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	297, 459
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	267, 375
HpyCH4III	ACNGT	2 cut(s)	320, 469
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	4, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 195
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	6 cut(s)	26, 100, 130, 254, 310, 490
HspAI	GCGC	3 cut(s)	230, 272, 339
KpnI	GGTACC	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	56, 259
LpnPI	CCDG	6 cut(s)	23, 227, 240, 251, 274, 416
LweI	GCATC	3 cut(s)	68, 185, 332
MaeI	CTAG	2 cut(s)	51, 183
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	83, 355, 535
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MfeI	CAATTG	1 cut(s)	280
MluCI	AATT	3 cut(s)	34, 280, 350
MluI	ACGCGT	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	275, 511
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	403
MunI	CAATTG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	10, 195
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	6 cut(s)	26, 100, 130, 254, 310, 490
NlaIV	GGNNCC	2 cut(s)	102, 387
NmuCI	GTSAC	1 cut(s)	535
NsbI	TGCGCA	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
Psp1406I	AACGTT	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	102, 387
PspPI	GGNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	8 cut(s)	15, 121, 222, 246, 270, 366, 391, 421
SfaNI	GCATC	3 cut(s)	68, 185, 332
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	3 cut(s)	34, 280, 350
SsiI	CCGC	1 cut(s)	504
SspMI	CTAG	2 cut(s)	51, 183
TaaI	ACNGT	2 cut(s)	320, 469
TaiI	ACGT	1 cut(s)	366
TasI	AATT	3 cut(s)	34, 280, 350
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	535
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	513
TspGWI	ACGGA	2 cut(s)	319, 481
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	51, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.