protein ROOT PRIMORDIUM DEFECTIVE
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 |
| malus_domestica | MD05G1263500.v1.1 MD10G1241200.v1.1 |
| prunus_persica | Prupe.4G102000_v2.0.a1 |
| pyrus_communis | pycom05g24750 pycom10g20220 |
| rosa_chinensis | RchiOBHm_Chr5g0018361 |
| rosa_laevigata | RLG00000032355 |
| rosa_multiflora | Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00059380 |
| rosa_rugosa | Rorug05G0041800.1 |
| rosa_samantha | Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100 |
| rosa_wichuraiana | Rw5G011800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 307 |
| AccII | CGCG | 1 cut(s) | 171 |
| AciI | CCGC | 1 cut(s) | 171 |
| AcuI | CTGAAG | 2 cut(s) | 279, 366 |
| AfaI | GTAC | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 110 |
| AgsI | TTSAA | 1 cut(s) | 63 |
| AjnI | CCWGG | 1 cut(s) | 109 |
| AluBI | AGCT | 2 cut(s) | 13, 59 |
| AluI | AGCT | 2 cut(s) | 13, 59 |
| ApeKI | GCWGC | 1 cut(s) | 224 |
| AspLEI | GCGC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 1 cut(s) | 472 |
| BaeGI | GKGCMC | 1 cut(s) | 241 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| BbvI | GCAGC | 1 cut(s) | 236 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 454, 488 |
| BciT130I | CCWGG | 1 cut(s) | 111 |
| BciVI | GTATCC | 1 cut(s) | 288 |
| BfaI | CTAG | 1 cut(s) | 51 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BfuI | GTATCC | 1 cut(s) | 288 |
| BisI | GCNGC | 1 cut(s) | 225 |
| BlsI | GCNGC | 1 cut(s) | 226 |
| Bme1390I | CCNGG | 1 cut(s) | 111 |
| BmiI | GGNNCC | 2 cut(s) | 291, 354 |
| BmrFI | CCNGG | 1 cut(s) | 111 |
| BmrI | ACTGGG | 1 cut(s) | 92 |
| BmsI | GCATC | 2 cut(s) | 179, 395 |
| BmuI | ACTGGG | 1 cut(s) | 92 |
| BoxI | GACNNNNGTC | 1 cut(s) | 416 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 110 |
| Bse1I | ACTGG | 2 cut(s) | 98, 362 |
| Bse3DI | GCAATG | 1 cut(s) | 349 |
| BseBI | CCWGG | 1 cut(s) | 111 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BseMI | GCAATG | 1 cut(s) | 349 |
| BseMII | CTCAG | 1 cut(s) | 416 |
| BseNI | ACTGG | 2 cut(s) | 98, 362 |
| BseRI | GAGGAG | 2 cut(s) | 69, 96 |
| BseSI | GKGCMC | 1 cut(s) | 241 |
| BseXI | GCAGC | 1 cut(s) | 236 |
| Bsh1236I | CGCG | 1 cut(s) | 171 |
| BsiSI | CCGG | 1 cut(s) | 262 |
| BslFI | GGGAC | 1 cut(s) | 86 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BsmFI | GGGAC | 1 cut(s) | 86 |
| BsmI | GAATGC | 1 cut(s) | 36 |
| Bsp1286I | GDGCHC | 2 cut(s) | 241, 292 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 415 |
| BspFNI | CGCG | 1 cut(s) | 171 |
| BspLI | GGNNCC | 2 cut(s) | 291, 354 |
| BspMAI | CTGCAG | 1 cut(s) | 226 |
| BsrDI | GCAATG | 1 cut(s) | 349 |
| BsrI | ACTGG | 2 cut(s) | 98, 362 |
| Bst2UI | CCWGG | 1 cut(s) | 111 |
| Bst4CI | ACNGT | 4 cut(s) | 91, 208, 251, 415 |
| BstC8I | GCNNGC | 1 cut(s) | 11 |
| BstDEI | CTNAG | 1 cut(s) | 402 |
| BstFNI | CGCG | 1 cut(s) | 171 |
| BstHHI | GCGC | 1 cut(s) | 308 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 224 |
| BstNI | CCWGG | 1 cut(s) | 111 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 416 |
| BstSCI | CCNGG | 1 cut(s) | 109 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstSLI | GKGCMC | 1 cut(s) | 241 |
| BstUI | CGCG | 1 cut(s) | 171 |
| BstV1I | GCAGC | 1 cut(s) | 236 |
| BsuI | GTATCC | 1 cut(s) | 288 |
| BtsIMutI | CAGTG | 1 cut(s) | 239 |
| Cac8I | GCNNGC | 1 cut(s) | 11 |
| CfoI | GCGC | 1 cut(s) | 308 |
| Csp6I | GTAC | 1 cut(s) | 114 |
| CviJI | RGCY | 7 cut(s) | 9, 13, 59, 125, 227, 290, 408 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 13, 59, 125, 227, 290, 408 |
| CviQI | GTAC | 1 cut(s) | 114 |
| DdeI | CTNAG | 1 cut(s) | 402 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| Eco57I | CTGAAG | 2 cut(s) | 279, 366 |
| EcoRII | CCWGG | 1 cut(s) | 109 |
| EcoT22I | ATGCAT | 1 cut(s) | 165 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| FaiI | YATR | 9 cut(s) | 46, 82, 165, 204, 275, 283, 285, 338, 434 |
| FaqI | GGGAC | 1 cut(s) | 86 |
| FauNDI | CATATG | 1 cut(s) | 283 |
| Fnu4HI | GCNGC | 1 cut(s) | 225 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| Fsp4HI | GCNGC | 1 cut(s) | 225 |
| FspBI | CTAG | 1 cut(s) | 51 |
| FspI | TGCGCA | 1 cut(s) | 307 |
| GlaI | GCGC | 1 cut(s) | 307 |
| GluI | GCNGC | 1 cut(s) | 225 |
| HapII | CCGG | 1 cut(s) | 262 |
| HhaI | GCGC | 1 cut(s) | 308 |
| Hin6I | GCGC | 1 cut(s) | 306 |
| HinP1I | GCGC | 1 cut(s) | 306 |
| HpaII | CCGG | 1 cut(s) | 262 |
| HphI | GGTGA | 1 cut(s) | 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 367 |
| Hpy188I | TCNGA | 1 cut(s) | 405 |
| Hpy8I | GTNNAC | 1 cut(s) | 367 |
| Hpy99I | CGWCG | 2 cut(s) | 473, 476 |
| HpyAV | CCTTC | 1 cut(s) | 303 |
| HpyCH4III | ACNGT | 4 cut(s) | 91, 208, 251, 415 |
| HpyCH4IV | ACGT | 1 cut(s) | 468 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 77, 84, 147, 163, 224 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 224 |
| HpyF3I | CTNAG | 1 cut(s) | 402 |
| HpySE526I | ACGT | 1 cut(s) | 468 |
| HspAI | GCGC | 1 cut(s) | 306 |
| LmnI | GCTCC | 6 cut(s) | 33, 56, 173, 197, 223, 295 |
| Lsp1109I | GCAGC | 1 cut(s) | 236 |
| LweI | GCATC | 2 cut(s) | 179, 395 |
| MaeI | CTAG | 1 cut(s) | 51 |
| MaeII | ACGT | 1 cut(s) | 468 |
| MaeIII | GTNAC | 3 cut(s) | 91, 322, 481 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MhlI | GDGCHC | 2 cut(s) | 241, 292 |
| MluCI | AATT | 2 cut(s) | 357, 455 |
| MnlI | CCTC | 6 cut(s) | 47, 114, 117, 342, 385, 405 |
| Mph1103I | ATGCAT | 1 cut(s) | 165 |
| MseI | TTAA | 2 cut(s) | 158, 300 |
| MspI | CCGG | 1 cut(s) | 262 |
| MspR9I | CCNGG | 1 cut(s) | 111 |
| Mva1269I | GAATGC | 1 cut(s) | 36 |
| MvaI | CCWGG | 1 cut(s) | 111 |
| MvnI | CGCG | 1 cut(s) | 171 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 224 |
| NdeI | CATATG | 1 cut(s) | 283 |
| NlaIV | GGNNCC | 2 cut(s) | 291, 354 |
| NmuCI | GTSAC | 1 cut(s) | 481 |
| NsbI | TGCGCA | 1 cut(s) | 307 |
| NsiI | ATGCAT | 1 cut(s) | 165 |
| PctI | GAATGC | 1 cut(s) | 36 |
| PkrI | GCNGC | 1 cut(s) | 226 |
| PshAI | GACNNNNGTC | 1 cut(s) | 416 |
| Psp6I | CCWGG | 1 cut(s) | 109 |
| PspGI | CCWGG | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 2 cut(s) | 291, 354 |
| PstI | CTGCAG | 1 cut(s) | 226 |
| RsaI | GTAC | 1 cut(s) | 115 |
| RsaNI | GTAC | 1 cut(s) | 114 |
| SaqAI | TTAA | 2 cut(s) | 158, 300 |
| SatI | GCNGC | 1 cut(s) | 225 |
| ScrFI | CCNGG | 1 cut(s) | 111 |
| SduI | GDGCHC | 2 cut(s) | 241, 292 |
| SetI | ASST | 3 cut(s) | 15, 61, 471 |
| SfaNI | GCATC | 2 cut(s) | 179, 395 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| Sse9I | AATT | 2 cut(s) | 357, 455 |
| SsiI | CCGC | 1 cut(s) | 171 |
| SspMI | CTAG | 1 cut(s) | 51 |
| StyD4I | CCNGG | 1 cut(s) | 109 |
| TaaI | ACNGT | 4 cut(s) | 91, 208, 251, 415 |
| TaiI | ACGT | 1 cut(s) | 471 |
| TasI | AATT | 2 cut(s) | 357, 455 |
| Tru1I | TTAA | 2 cut(s) | 158, 300 |
| Tru9I | TTAA | 2 cut(s) | 158, 300 |
| TscAI | CASTG | 1 cut(s) | 239 |
| TseFI | GTSAC | 1 cut(s) | 481 |
| TseI | GCWGC | 1 cut(s) | 224 |
| Tsp45I | GTSAC | 1 cut(s) | 481 |
| TspGWI | ACGGA | 1 cut(s) | 131 |
| TspRI | CASTG | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 17, 248, 334 |
| XspI | CTAG | 1 cut(s) | 51 |
| Zsp2I | ATGCAT | 1 cut(s) | 165 |