protein ROOT PRIMORDIUM DEFECTIVE
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 |
| malus_domestica | MD05G1263500.v1.1 MD10G1241200.v1.1 |
| prunus_persica | Prupe.4G102000_v2.0.a1 |
| pyrus_communis | pycom05g24750 pycom10g20220 |
| rosa_chinensis | RchiOBHm_Chr5g0018361 |
| rosa_laevigata | RLG00000032355 |
| rosa_multiflora | Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00059380 |
| rosa_rugosa | Rorug05G0041800.1 |
| rosa_samantha | Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100 |
| rosa_wichuraiana | Rw5G011800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 391 |
| AccII | CGCG | 1 cut(s) | 255 |
| AciI | CCGC | 1 cut(s) | 255 |
| AcuI | CTGAAG | 2 cut(s) | 363, 450 |
| AfaI | GTAC | 1 cut(s) | 199 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 194 |
| AgsI | TTSAA | 2 cut(s) | 73, 147 |
| AjnI | CCWGG | 1 cut(s) | 193 |
| AluBI | AGCT | 3 cut(s) | 83, 97, 143 |
| AluI | AGCT | 3 cut(s) | 83, 97, 143 |
| ApeKI | GCWGC | 2 cut(s) | 80, 228 |
| AspLEI | GCGC | 1 cut(s) | 392 |
| AsuHPI | GGTGA | 1 cut(s) | 556 |
| BanII | GRGCYC | 1 cut(s) | 376 |
| BbvI | GCAGC | 2 cut(s) | 92, 215 |
| BciT130I | CCWGG | 1 cut(s) | 195 |
| BciVI | GTATCC | 1 cut(s) | 372 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BfmI | CTRYAG | 1 cut(s) | 229 |
| BfuI | GTATCC | 1 cut(s) | 372 |
| BisI | GCNGC | 2 cut(s) | 81, 229 |
| BlsI | GCNGC | 2 cut(s) | 82, 230 |
| Bme1390I | CCNGG | 1 cut(s) | 195 |
| BmiI | GGNNCC | 2 cut(s) | 375, 438 |
| BmrFI | CCNGG | 1 cut(s) | 195 |
| BmrI | ACTGGG | 1 cut(s) | 176 |
| BmsI | GCATC | 2 cut(s) | 263, 479 |
| BmuI | ACTGGG | 1 cut(s) | 176 |
| BoxI | GACNNNNGTC | 1 cut(s) | 500 |
| BpmI | CTGGAG | 1 cut(s) | 288 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 194 |
| Bse1I | ACTGG | 2 cut(s) | 182, 446 |
| Bse3DI | GCAATG | 1 cut(s) | 433 |
| BseBI | CCWGG | 1 cut(s) | 195 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BseMI | GCAATG | 1 cut(s) | 433 |
| BseMII | CTCAG | 1 cut(s) | 500 |
| BseNI | ACTGG | 2 cut(s) | 182, 446 |
| BseRI | GAGGAG | 2 cut(s) | 153, 180 |
| BseXI | GCAGC | 2 cut(s) | 92, 215 |
| Bsh1236I | CGCG | 1 cut(s) | 255 |
| BsiSI | CCGG | 1 cut(s) | 346 |
| BslFI | GGGAC | 1 cut(s) | 170 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 194 |
| BsmFI | GGGAC | 1 cut(s) | 170 |
| BsmI | GAATGC | 1 cut(s) | 120 |
| Bsp1286I | GDGCHC | 1 cut(s) | 376 |
| BspACI | CCGC | 1 cut(s) | 255 |
| BspCNI | CTCAG | 1 cut(s) | 499 |
| BspFNI | CGCG | 1 cut(s) | 255 |
| BspLI | GGNNCC | 2 cut(s) | 375, 438 |
| BspMAI | CTGCAG | 1 cut(s) | 233 |
| BsrDI | GCAATG | 1 cut(s) | 433 |
| BsrI | ACTGG | 2 cut(s) | 182, 446 |
| Bst2UI | CCWGG | 1 cut(s) | 195 |
| Bst4CI | ACNGT | 4 cut(s) | 175, 292, 335, 499 |
| BstC8I | GCNNGC | 3 cut(s) | 51, 95, 310 |
| BstDEI | CTNAG | 1 cut(s) | 486 |
| BstFNI | CGCG | 1 cut(s) | 255 |
| BstHHI | GCGC | 1 cut(s) | 392 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 94 |
| BstNI | CCWGG | 1 cut(s) | 195 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 500 |
| BstSCI | CCNGG | 1 cut(s) | 193 |
| BstSFI | CTRYAG | 1 cut(s) | 229 |
| BstUI | CGCG | 1 cut(s) | 255 |
| BstV1I | GCAGC | 2 cut(s) | 92, 215 |
| BsuI | GTATCC | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 3 cut(s) | 51, 95, 310 |
| CfoI | GCGC | 1 cut(s) | 392 |
| Csp6I | GTAC | 1 cut(s) | 198 |
| CviJI | RGCY | 9 cut(s) | 53, 83, 93, 97, 143, 209, 228, 374, 492 |
| CviKI_1 | RGCY | 9 cut(s) | 53, 83, 93, 97, 143, 209, 228, 374, 492 |
| CviQI | GTAC | 1 cut(s) | 198 |
| DdeI | CTNAG | 1 cut(s) | 486 |
| Eco24I | GRGCYC | 1 cut(s) | 376 |
| Eco57I | CTGAAG | 2 cut(s) | 363, 450 |
| EcoRII | CCWGG | 1 cut(s) | 193 |
| EcoT22I | ATGCAT | 1 cut(s) | 249 |
| EcoT38I | GRGCYC | 1 cut(s) | 376 |
| FaqI | GGGAC | 1 cut(s) | 170 |
| FauI | CCCGC | 1 cut(s) | 248 |
| FauNDI | CATATG | 1 cut(s) | 367 |
| Fnu4HI | GCNGC | 2 cut(s) | 81, 229 |
| FriOI | GRGCYC | 1 cut(s) | 376 |
| Fsp4HI | GCNGC | 2 cut(s) | 81, 229 |
| FspBI | CTAG | 1 cut(s) | 135 |
| FspI | TGCGCA | 1 cut(s) | 391 |
| GlaI | GCGC | 1 cut(s) | 391 |
| GluI | GCNGC | 2 cut(s) | 81, 229 |
| GsuI | CTGGAG | 1 cut(s) | 288 |
| HapII | CCGG | 1 cut(s) | 346 |
| HhaI | GCGC | 1 cut(s) | 392 |
| Hin6I | GCGC | 1 cut(s) | 390 |
| HinP1I | GCGC | 1 cut(s) | 390 |
| HpaII | CCGG | 1 cut(s) | 346 |
| HphI | GGTGA | 1 cut(s) | 556 |
| Hpy166II | GTNNAC | 1 cut(s) | 451 |
| Hpy188I | TCNGA | 1 cut(s) | 489 |
| Hpy8I | GTNNAC | 1 cut(s) | 451 |
| Hpy99I | CGWCG | 1 cut(s) | 557 |
| HpyAV | CCTTC | 1 cut(s) | 387 |
| HpyCH4III | ACNGT | 4 cut(s) | 175, 292, 335, 499 |
| HpyCH4IV | ACGT | 2 cut(s) | 15, 552 |
| HpyCH4V | TGCA | 7 cut(s) | 49, 80, 88, 161, 168, 231, 247 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 94 |
| HpyF3I | CTNAG | 1 cut(s) | 486 |
| HpySE526I | ACGT | 2 cut(s) | 15, 552 |
| HspAI | GCGC | 1 cut(s) | 390 |
| LmnI | GCTCC | 5 cut(s) | 117, 140, 281, 307, 379 |
| Lsp1109I | GCAGC | 2 cut(s) | 92, 215 |
| LweI | GCATC | 2 cut(s) | 263, 479 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MaeII | ACGT | 2 cut(s) | 15, 552 |
| MaeIII | GTNAC | 3 cut(s) | 175, 406, 565 |
| MboII | GAAGA | 1 cut(s) | 116 |
| MhlI | GDGCHC | 1 cut(s) | 376 |
| MluCI | AATT | 2 cut(s) | 441, 539 |
| MnlI | CCTC | 6 cut(s) | 64, 131, 198, 201, 426, 469 |
| Mph1103I | ATGCAT | 1 cut(s) | 249 |
| MseI | TTAA | 2 cut(s) | 242, 384 |
| MspI | CCGG | 1 cut(s) | 346 |
| MspR9I | CCNGG | 1 cut(s) | 195 |
| Mva1269I | GAATGC | 1 cut(s) | 120 |
| MvaI | CCWGG | 1 cut(s) | 195 |
| MvnI | CGCG | 1 cut(s) | 255 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 94 |
| NdeI | CATATG | 1 cut(s) | 367 |
| NlaIV | GGNNCC | 2 cut(s) | 375, 438 |
| NmuCI | GTSAC | 1 cut(s) | 565 |
| NsbI | TGCGCA | 1 cut(s) | 391 |
| NsiI | ATGCAT | 1 cut(s) | 249 |
| PctI | GAATGC | 1 cut(s) | 120 |
| PkrI | GCNGC | 2 cut(s) | 82, 230 |
| PshAI | GACNNNNGTC | 1 cut(s) | 500 |
| Psp6I | CCWGG | 1 cut(s) | 193 |
| PspGI | CCWGG | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 2 cut(s) | 375, 438 |
| PstI | CTGCAG | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 199 |
| RsaNI | GTAC | 1 cut(s) | 198 |
| SaqAI | TTAA | 2 cut(s) | 242, 384 |
| SatI | GCNGC | 2 cut(s) | 81, 229 |
| ScrFI | CCNGG | 1 cut(s) | 195 |
| SduI | GDGCHC | 1 cut(s) | 376 |
| SetI | ASST | 5 cut(s) | 18, 85, 99, 145, 555 |
| SfaNI | GCATC | 2 cut(s) | 263, 479 |
| SfcI | CTRYAG | 1 cut(s) | 229 |
| Sse9I | AATT | 2 cut(s) | 441, 539 |
| SsiI | CCGC | 1 cut(s) | 255 |
| SspMI | CTAG | 1 cut(s) | 135 |
| StyD4I | CCNGG | 1 cut(s) | 193 |
| TaaI | ACNGT | 4 cut(s) | 175, 292, 335, 499 |
| TaiI | ACGT | 2 cut(s) | 18, 555 |
| TasI | AATT | 2 cut(s) | 441, 539 |
| Tru1I | TTAA | 2 cut(s) | 242, 384 |
| Tru9I | TTAA | 2 cut(s) | 242, 384 |
| TseFI | GTSAC | 1 cut(s) | 565 |
| TseI | GCWGC | 2 cut(s) | 80, 228 |
| Tsp45I | GTSAC | 1 cut(s) | 565 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 215 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 332, 418 |
| XspI | CTAG | 1 cut(s) | 135 |
| Zsp2I | ATGCAT | 1 cut(s) | 249 |