Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007186

Physical Location & Seq

Genomic Coordinates Forward (+)

33667882 .. 33674054

Gene Structure 6173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1241200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCGGTTTTACAACATAAAAAAACAAGGTTGTCCGTTGAAAATTCTAATGTGAATCCGATATCTCCAATATTCCAACACATTATTTACACAACAACAATCAACGATATCACAAACGCAAAGAACTTCAACAAACGACCAAAAACTTTATTCTTCCCTTCTTTTCTTCGACATTTCCTTATCATTTCCTCCGTATCCAGAAAGCCCGCGTCTTTCTTTGGATTCGATTCCGCGTTTTGGATTAATAAAAAATTAAAAAAATTCCCAAAAATTTCATATTTTGGTCTCAGATTTTACCTTTCCTCGAACCTCAGCAATTCGATTACGTCGAATTACAGCTCCGATTGCTCGAGGGCTATGCAGAGCCAGCTTGTGTGTAGTGGGTGTAGGAGCATTCTTCTGTATCCTAGAGGAGCAACGAATGTTTGCTGTGCATTATGCAATATAATCACCCCAGTCCCTCCTCCTGGTACGGAAATGGCTCAACTTATTTGTGGGGGTTGTAGGACGTTGCTAATGCACACACGTGGGGCGACAAGTGTGAGGTGTGCCTGCTGTCACACAGTGAATCTTGCTCCAGCATCCAGTCAGGTTGCCCACATCAACTGTGGAAATTGTCGGACAACACTTATGTATCCGTATGGAGCTCCTTCAGTCAAATGTGCACTCTGTCAGTATGTTACAAATGTTGGTATGTCCAATATGAGGGTTCCAATTCCAGCGCACAGACCTAATGGGACAACCAATTCAGGAATGGTGCCCTCTACTTCAGCAAGCCAGACCGTCGTCGTTGAGAACCCTATGTCTGTCGATGAAAGTGGCAAATTGGTGAGCAATGTCGTCGTCGGTGTCACAACGGGAAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

290

Amino Acids

31.48

Weight (kDa)

9.69

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	126 - 149	1.8e-10	LSD1 zinc finger
zf-LSD1	PF06943	165 - 189	5.2e-12	LSD1 zinc finger
zf-LSD1	PF06943	203 - 227	2.6e-14	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380
malus_domestica	MD05G1263500.v1.1 MD10G1241200.v1.1
prunus_persica	Prupe.4G102000_v2.0.a1
pyrus_communis	pycom05g24750 pycom10g20220
rosa_chinensis	RchiOBHm_Chr5g0018361
rosa_laevigata	RLG00000032355
rosa_multiflora	Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059380
rosa_rugosa	Rorug05G0041800.1
rosa_samantha	Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100
rosa_wichuraiana	Rw5G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	757
AccII	CGCG	2 cut(s)	209, 233
AciI	CCGC	2 cut(s)	207, 231
AcsI	RAATTY	3 cut(s)	43, 260, 270
AcuI	CTGAAG	2 cut(s)	636, 753
AcvI	CACGTG	1 cut(s)	527
AdeI	CACNNNGTG	1 cut(s)	565
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	237, 467, 705
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	2 cut(s)	41, 130
AjnI	CCWGG	1 cut(s)	466
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	3 cut(s)	339, 370, 647
AluI	AGCT	3 cut(s)	339, 370, 647
Alw21I	GWGCWC	2 cut(s)	649, 667
Alw26I	GTCTC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	663
Ama87I	CYCGRG	1 cut(s)	349
ApaLI	GTGCAC	1 cut(s)	663
ApoI	RAATTY	3 cut(s)	43, 260, 270
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	442, 841
AvaI	CYCGRG	1 cut(s)	349
BaeGI	GKGCMC	2 cut(s)	667, 762
BaeI	ACNNNNGTAYC	2 cut(s)	617, 650
BanI	GGYRCC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	649
BbrPI	CACGTG	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	649, 667
BbvCI	CCTCAGC	1 cut(s)	311
BcgI	CGANNNNNNTGC	4 cut(s)	340, 374, 823, 857
BciT130I	CCWGG	1 cut(s)	468
BciVI	GTATCC	3 cut(s)	205, 414, 645
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	408
BfuI	GTATCC	3 cut(s)	205, 414, 645
Bme1390I	CCNGG	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	711, 759
BmrFI	CCNGG	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	449
BoxI	GACNNNNGTC	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	3 cut(s)	237, 467, 705
Bse1I	ACTGG	2 cut(s)	455, 585
Bse3DI	GCAATG	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	581
BseLI	CCNNNNNNNGG	3 cut(s)	237, 467, 705
BseMI	GCAATG	1 cut(s)	841
BseMII	CTCAG	2 cut(s)	301, 325
BseNI	ACTGG	2 cut(s)	455, 585
BseRI	GAGGAG	2 cut(s)	426, 453
BseSI	GKGCMC	2 cut(s)	667, 762
Bsh1236I	CGCG	2 cut(s)	209, 233
BshNI	GGYRCC	1 cut(s)	757
BsiHKAI	GWGCWC	2 cut(s)	649, 667
BsiHKCI	CYCGRG	1 cut(s)	349
BslFI	GGGAC	2 cut(s)	443, 751
BslI	CCNNNNNNNGG	3 cut(s)	237, 467, 705
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	443, 751
BsmI	GAATGC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	649, 667, 762
BspACI	CCGC	2 cut(s)	207, 231
BspCNI	CTCAG	2 cut(s)	300, 324
BspFNI	CGCG	2 cut(s)	209, 233
BspLI	GGNNCC	2 cut(s)	711, 759
BspT107I	GGYRCC	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	841
BsrI	ACTGG	2 cut(s)	455, 585
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	565, 608, 784
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	207, 368, 553, 775
BstDEI	CTNAG	2 cut(s)	287, 311
BstF5I	GGATG	1 cut(s)	581
BstFNI	CGCG	2 cut(s)	209, 233
BstHHI	GCGC	1 cut(s)	724
BstMAI	GTCTC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 367
BstNI	CCWGG	1 cut(s)	468
BstPAI	GACNNNNGTC	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	466
BstSLI	GKGCMC	2 cut(s)	667, 762
BstUI	CGCG	2 cut(s)	209, 233
BsuI	GTATCC	3 cut(s)	205, 414, 645
BtsCI	GGATG	1 cut(s)	581
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	4 cut(s)	207, 368, 553, 775
CfoI	GCGC	1 cut(s)	724
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	471
CviJI	RGCY	8 cut(s)	205, 339, 356, 366, 370, 482, 647, 777
CviKI_1	RGCY	8 cut(s)	205, 339, 356, 366, 370, 482, 647, 777
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	287, 311
DraIII	CACNNNGTG	1 cut(s)	565
Ecl136II	GAGCTC	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	2 cut(s)	63, 109
Eco53kI	GAGCTC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	636, 753
Eco72I	CACGTG	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	466
EcoRV	GATATC	2 cut(s)	63, 109
EcoT38I	GRGCYC	1 cut(s)	649
FaqI	GGGAC	2 cut(s)	443, 751
FauI	CCCGC	1 cut(s)	214
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	649
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	723
GsuI	CTGGAG	1 cut(s)	561
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	724
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HinfI	GANTC	4 cut(s)	55, 222, 227, 568
HphI	GGTGA	2 cut(s)	442, 841
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	4 cut(s)	60, 290, 343, 621
Hpy188III	TCNNGA	2 cut(s)	198, 750
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	5 cut(s)	331, 788, 791, 845, 848
HpyAV	CCTTC	2 cut(s)	168, 660
HpyCH4III	ACNGT	3 cut(s)	565, 608, 784
HpyCH4IV	ACGT	3 cut(s)	326, 509, 526
HpyCH4V	TGCA	5 cut(s)	361, 434, 441, 520, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 367
HpyF3I	CTNAG	2 cut(s)	287, 311
HpySE526I	ACGT	3 cut(s)	326, 509, 526
HspAI	GCGC	1 cut(s)	722
LmnI	GCTCC	6 cut(s)	344, 390, 413, 580, 644, 652
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	3 cut(s)	326, 509, 526
MaeIII	GTNAC	3 cut(s)	557, 679, 850
MboII	GAAGA	3 cut(s)	145, 158, 389
MhlI	GDGCHC	3 cut(s)	649, 667, 762
MmeI	TCCRAC	2 cut(s)	100, 599
MseI	TTAA	2 cut(s)	243, 254
MslI	CAYNNNNRTG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	468
MvnI	CGCG	2 cut(s)	209, 233
MwoI	GCNNNNNNNGC	2 cut(s)	345, 367
NlaIV	GGNNCC	2 cut(s)	711, 759
NmuCI	GTSAC	2 cut(s)	557, 850
OliI	CACNNNNGTG	1 cut(s)	525
PaeR7I	CTCGAG	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	4 cut(s)	55, 222, 227, 568
PmaCI	CACGTG	1 cut(s)	527
PmlI	CACGTG	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	527
PshAI	GACNNNNGTC	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	466
PspCI	CACGTG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	711, 759
PspXI	VCTCGAGB	1 cut(s)	349
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	649
SaqAI	TTAA	2 cut(s)	243, 254
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	3 cut(s)	649, 667, 762
SfaNI	GCATC	1 cut(s)	590
Sfr274I	CTCGAG	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SsiI	CCGC	2 cut(s)	207, 231
SspI	AATATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	565, 608, 784
TaiI	ACGT	3 cut(s)	329, 512, 529
TaqI	TCGA	7 cut(s)	169, 225, 305, 320, 329, 350, 810
TfiI	GAWTC	4 cut(s)	55, 222, 227, 568
Tru1I	TTAA	2 cut(s)	243, 254
Tru9I	TTAA	2 cut(s)	243, 254
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	2 cut(s)	557, 850
Tsp45I	GTSAC	2 cut(s)	557, 850
TspDTI	ATGAA	2 cut(s)	264, 828
TspGWI	ACGGA	4 cut(s)	25, 181, 488, 627
TspRI	CASTG	1 cut(s)	570
VneI	GTGCAC	1 cut(s)	663
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	3 cut(s)	43, 260, 270
XcmI	CCANNNNNNNNNTGG	2 cut(s)	605, 751
XhoI	CTCGAG	1 cut(s)	349
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.