Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007186

Physical Location & Seq

Genomic Coordinates Reverse (-)

13895025 .. 13897381

Gene Structure 2357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAGAGCCAGCTTGTGTGTAGTGGTTGTAGGAGCATTCTTCTATATCCTAGAGGAGCTTCAAATGTTTGTTGTGCATTATGCAATACAGTTACCGCAGTCCCTCCTCCTGGTACGGAAATGGCTCAACTTATTTGTGGGGGTTGCAGGACATTGTTAATGCATACACGCGGAGCAACAAGTGTGAGATGCTCCTGCTGTCATACAGTCAATCTTGCTCCAGGTGCTCCAGCAGCCAATCAGTTTGCCCACATCAACTGTGGGAACTGCCGGACAACGCTTATGTATCCATATGGGGCTCCTTCAGTTAAATGCGCAGTCTGTCAGTTTGTTACCAATGTTGGTATGGGCAATGCGAGGGTTCCAATTCCAGTTCACAGACCCTCTACTTCAGCATCAATGCCTCATTCTCAGAGCCAGACTGTTGTCGTTGAGAACCCTATGTCTGTTGATGAGAGTGGCAAATTGGTGAGCAACGTCGTCGTTGGTGTTACAACAGGGAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

170

Amino Acids

17.6

Weight (kDa)

8.93

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	7 - 31	2.8e-11	LSD1 zinc finger
zf-LSD1	PF06943	46 - 70	3.1e-12	LSD1 zinc finger
zf-LSD1	PF06943	87 - 111	7.5e-15	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380
malus_domestica	MD05G1263500.v1.1 MD10G1241200.v1.1
prunus_persica	Prupe.4G102000_v2.0.a1
pyrus_communis	pycom05g24750 pycom10g20220
rosa_chinensis	RchiOBHm_Chr5g0018361
rosa_laevigata	RLG00000032355
rosa_multiflora	Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059380
rosa_rugosa	Rorug05G0041800.1
rosa_samantha	Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100
rosa_wichuraiana	Rw5G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	316
AccII	CGCG	1 cut(s)	171
AciI	CCGC	2 cut(s)	96, 171
AcuI	CTGAAG	2 cut(s)	288, 375
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	63
AjnI	CCWGG	2 cut(s)	109, 220
AluBI	AGCT	2 cut(s)	13, 59
AluI	AGCT	2 cut(s)	13, 59
Alw21I	GWGCWC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	2 cut(s)	111, 222
BciVI	GTATCC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	2 cut(s)	111, 222
BmiI	GGNNCC	2 cut(s)	300, 363
BmrFI	CCNGG	2 cut(s)	111, 222
BmsI	GCATC	2 cut(s)	179, 404
BoxI	GACNNNNGTC	1 cut(s)	425
BpmI	CTGGAG	2 cut(s)	204, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	111, 222
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	2 cut(s)	69, 96
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	229, 301
BspACI	CCGC	2 cut(s)	96, 171
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	300, 363
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	371
Bst2UI	CCWGG	2 cut(s)	111, 222
Bst4CI	ACNGT	4 cut(s)	91, 208, 260, 424
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 224, 233
BstNI	CCWGG	2 cut(s)	111, 222
BstPAI	GACNNNNGTC	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	109, 220
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	7 cut(s)	9, 13, 59, 125, 236, 299, 417
CviKI_1	RGCY	7 cut(s)	9, 13, 59, 125, 236, 299, 417
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	288, 375
EcoRII	CCWGG	2 cut(s)	109, 220
EcoT22I	ATGCAT	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	301
FaiI	YATR	9 cut(s)	46, 82, 165, 204, 284, 292, 294, 347, 443
FaqI	GGGAC	1 cut(s)	86
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	316
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	1 cut(s)	234
GsuI	CTGGAG	2 cut(s)	204, 213
HapII	CCGG	1 cut(s)	271
HhaI	GCGC	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	414
Hpy8I	GTNNAC	1 cut(s)	376
Hpy99I	CGWCG	2 cut(s)	482, 485
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	4 cut(s)	91, 208, 260, 424
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	4, 77, 84, 147, 163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 224, 233
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	477
HspAI	GCGC	1 cut(s)	315
LmnI	GCTCC	7 cut(s)	33, 56, 173, 197, 223, 232, 304
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	2 cut(s)	179, 404
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	91, 331, 490
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	229, 301
MluCI	AATT	2 cut(s)	366, 464
MnlI	CCTC	6 cut(s)	47, 114, 117, 351, 394, 414
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	2 cut(s)	158, 309
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	111, 222
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	2 cut(s)	111, 222
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	10, 224, 233
NdeI	CATATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	300, 363
NsbI	TGCGCA	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	235
PshAI	GACNNNNGTC	1 cut(s)	425
Psp6I	CCWGG	2 cut(s)	109, 220
PspGI	CCWGG	2 cut(s)	109, 220
PspN4I	GGNNCC	2 cut(s)	300, 363
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	158, 309
SatI	GCNGC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	111, 222
SduI	GDGCHC	2 cut(s)	229, 301
SetI	ASST	4 cut(s)	15, 61, 226, 480
SfaNI	GCATC	2 cut(s)	179, 404
Sse9I	AATT	2 cut(s)	366, 464
SsiI	CCGC	2 cut(s)	96, 171
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	109, 220
TaaI	ACNGT	4 cut(s)	91, 208, 260, 424
TaiI	ACGT	1 cut(s)	480
TasI	AATT	2 cut(s)	366, 464
Tru1I	TTAA	2 cut(s)	158, 309
Tru9I	TTAA	2 cut(s)	158, 309
TseI	GCWGC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	2 cut(s)	257, 343
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.