Rmu_sc0029003.1_g000001

LSD1 zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029003.1
OG0007186
Physical Location & Seq
Forward (+)
1 .. 1623
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029003.1_g000001.1.cds

Sequence Viewer

Length: 389 bp
gtacggaaatggctcaacttatttgtgggggttgcaggacattgttaatgcatacacgcggagcaacaagtgtgagatgctcctgctgtcatacagtcaatcttgctcctgcagccaatcagtgtgcccacatcaactgtgggaactgccggacaacgcttatgtatccatatggggctccttcagttaaatgcgcagtctgtcagtttgttaccaatgttggtatgggcaatgtgagggttccaattccagttcacagaccctctacttcagcatcaatgcctcattctcagagccagactgttgtcgttgagaaccctatgtctgttgatgagagtggcaaattggtgagcaacgtcgtcgttggtgtcacaacagggaaaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-LSD1

Protein Analysis

128

Amino Acids

13.46

Weight (kDa)

8.92

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 195
AccII CGCG 1 cut(s) 59
AciI CCGC 1 cut(s) 59
AcuI CTGAAG 2 cut(s) 167, 254
AfaI GTAC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciVI GTATCC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 110
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 179, 242
BmsI GCATC 2 cut(s) 67, 283
BoxI GACNNNNGTC 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 250
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 129, 180
BspACI CCGC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 303
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 2 cut(s) 179, 242
BspMAI CTGCAG 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 1 cut(s) 250
Bst4CI ACNGT 3 cut(s) 96, 139, 303
BstDEI CTNAG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 110
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 124
BsuI GTATCC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 127
CfoI GCGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 2
CviJI RGCY 4 cut(s) 13, 115, 178, 296
CviKI_1 RGCY 4 cut(s) 13, 115, 178, 296
CviQI GTAC 1 cut(s) 2
DdeI CTNAG 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 180
Eco57I CTGAAG 2 cut(s) 167, 254
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 180
FaiI YATR 7 cut(s) 53, 92, 163, 171, 173, 226, 322
FauNDI CATATG 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 113
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 113
HapII CCGG 1 cut(s) 150
HhaI GCGC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 2 cut(s) 361, 364
HpyAV CCTTC 1 cut(s) 191
HpyCH4III ACNGT 3 cut(s) 96, 139, 303
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 35, 51, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 356
HspAI GCGC 1 cut(s) 194
LmnI GCTCC 4 cut(s) 61, 85, 111, 183
LpnPI CCDG 7 cut(s) 21, 96, 122, 163, 263, 310, 362
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 2 cut(s) 67, 283
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 210, 369
MhlI GDGCHC 2 cut(s) 129, 180
MluCI AATT 2 cut(s) 245, 343
MnlI CCTC 3 cut(s) 230, 273, 293
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 2 cut(s) 46, 188
MspI CCGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 171
NlaIV GGNNCC 2 cut(s) 179, 242
NmuCI GTSAC 1 cut(s) 369
NsbI TGCGCA 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 53
PkrI GCNGC 1 cut(s) 114
PshAI GACNNNNGTC 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 179, 242
PstI CTGCAG 1 cut(s) 114
RsaI GTAC 1 cut(s) 3
RsaNI GTAC 1 cut(s) 2
SaqAI TTAA 2 cut(s) 46, 188
SatI GCNGC 1 cut(s) 113
SduI GDGCHC 2 cut(s) 129, 180
SetI ASST 1 cut(s) 359
SfaNI GCATC 2 cut(s) 67, 283
SfcI CTRYAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 245, 343
SsiI CCGC 1 cut(s) 59
TaaI ACNGT 3 cut(s) 96, 139, 303
TaiI ACGT 1 cut(s) 359
TasI AATT 2 cut(s) 245, 343
Tru1I TTAA 2 cut(s) 46, 188
Tru9I TTAA 2 cut(s) 46, 188
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 369
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 222
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.