Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007186

Physical Location & Seq

Genomic Coordinates Forward (+)

81381887 .. 81387365

Gene Structure 5479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCAGAGCCAGCTTGTGTGTAGTGGTTGTAGGAGCATTCTTCTATATCCTAGAGGAGCTTCAAATGTTTGTTGTGCATTATGCAATACAGTTACCCCAGTCCCTCCTCCTGGTACGGAAATGGCTCAACTTATTTGTGGGGGCTGCAGGACATTGTTAATGCATACACGGGGGGCAACAAGTGTGAGATGCTCCTGCTGTCATACAGTCAATCTTGCTCCAGCAGCCAATCAGTTTGCCCACATCAACTGTGGGAATTGCCGGACAACGCTTATGTATCCATATGGGGCTCCTTCAGTTAAATGCGCAGTCTGTCAGTTTGTTACCAATGTTGGTATGGGCAATGCGAGGGTTCCAATTCCAGTTCACAGACCCTCTACTTCAGCATCAATGCCTCATTCTCAGACCCAGACTGTTGTCGTTGAGAACCCTATGTCTGTTGATGAGAGTGGCAAATTGGTGAGCAACGTCGTCGTTGGTGTCACAACAGGGAAAAATAGTGCACTCGGATTCTCGGCTACTTCTATTTTGAATGAAGCAGATCAAATCCTTATCACACATTACTTGGAAGATGGACATCAAAATTGGTTATATATTTTGTTGGAGATGTTCATAATTTACAACCTTTGTGCGAGAAACTATGTCCATGTTAGGTGTCAGATAATGTATGATGCACTAAAAACACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

229

Amino Acids

24.73

Weight (kDa)

8.33

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	7 - 31	4.4e-11	LSD1 zinc finger
zf-LSD1	PF06943	46 - 70	4.8e-12	LSD1 zinc finger
zf-LSD1	PF06943	84 - 108	1.2e-14	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380
malus_domestica	MD05G1263500.v1.1 MD10G1241200.v1.1
prunus_persica	Prupe.4G102000_v2.0.a1
pyrus_communis	pycom05g24750 pycom10g20220
rosa_chinensis	RchiOBHm_Chr5g0018361
rosa_laevigata	RLG00000032355
rosa_multiflora	Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059380
rosa_rugosa	Rorug05G0041800.1
rosa_samantha	Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100
rosa_wichuraiana	Rw5G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	307
AcuI	CTGAAG	2 cut(s)	279, 366
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	63, 532
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	13, 59
AluI	AGCT	2 cut(s)	13, 59
Alw21I	GWGCWC	1 cut(s)	505
Alw44I	GTGCAC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	144, 224
AspLEI	GCGC	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	505
BbvI	GCAGC	2 cut(s)	131, 236
BccI	CCATC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	288
BisI	GCNGC	2 cut(s)	145, 225
BlsI	GCNGC	2 cut(s)	146, 226
Bme1390I	CCNGG	1 cut(s)	111
BmiI	GGNNCC	2 cut(s)	291, 354
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	179, 395, 661
BmuI	ACTGGG	1 cut(s)	92
BoxI	GACNNNNGTC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	98, 362
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	98, 362
BseRI	GAGGAG	2 cut(s)	69, 96
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	131, 236
BsiHKAI	GWGCWC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	292, 505
Bsp143I	GATC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	291, 354
BspMAI	CTGCAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	98, 362
BssMI	GATC	1 cut(s)	541
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	4 cut(s)	91, 208, 251, 415
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 224
BstNI	CCWGG	1 cut(s)	111
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	131, 236
BsuI	GTATCC	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	11
CfoI	GCGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	647
CviJI	RGCY	8 cut(s)	9, 13, 59, 125, 144, 227, 290, 518
CviKI_1	RGCY	8 cut(s)	9, 13, 59, 125, 144, 227, 290, 518
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	279, 366
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	1 cut(s)	650
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	145, 225
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	2 cut(s)	145, 225
FspBI	CTAG	1 cut(s)	51
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	145, 225
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	650
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	510
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	367, 503
Hpy188I	TCNGA	3 cut(s)	405, 509, 660
Hpy8I	GTNNAC	2 cut(s)	367, 503
Hpy99I	CGWCG	2 cut(s)	473, 476
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	4 cut(s)	91, 208, 251, 415
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	7 cut(s)	4, 77, 84, 147, 163, 503, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 224
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	1 cut(s)	650
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	5 cut(s)	33, 56, 197, 223, 295
Lsp1109I	GCAGC	2 cut(s)	131, 236
LweI	GCATC	3 cut(s)	179, 395, 661
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	3 cut(s)	91, 322, 481
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	2 cut(s)	32, 581
MhlI	GDGCHC	2 cut(s)	292, 505
MluCI	AATT	5 cut(s)	256, 357, 455, 583, 615
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	47, 114, 117, 342, 385, 405
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	3 cut(s)	158, 300, 688
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	10, 224
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	1 cut(s)	650
NlaIV	GGNNCC	2 cut(s)	291, 354
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	481
NsbI	TGCGCA	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	510
PkrI	GCNGC	2 cut(s)	146, 226
PshAI	GACNNNNGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	291, 354
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	158, 300, 688
SatI	GCNGC	2 cut(s)	145, 225
Sau3AI	GATC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	2 cut(s)	292, 505
SetI	ASST	6 cut(s)	15, 61, 471, 627, 656, 688
SfaNI	GCATC	3 cut(s)	179, 395, 661
SfcI	CTRYAG	1 cut(s)	145
Sse9I	AATT	5 cut(s)	256, 357, 455, 583, 615
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	4 cut(s)	91, 208, 251, 415
TaiI	ACGT	1 cut(s)	471
TasI	AATT	5 cut(s)	256, 357, 455, 583, 615
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	3 cut(s)	158, 300, 688
Tru9I	TTAA	3 cut(s)	158, 300, 688
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	144, 224
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	549, 601
TspGWI	ACGGA	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	501
XcmI	CCANNNNNNNNNTGG	2 cut(s)	248, 334
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.