Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007186

Physical Location & Seq

Genomic Coordinates Reverse (-)

5211489 .. 5214366

Gene Structure 2878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCAGAGCCAGCTTGTGTGTAGTGGGTGTAGGAGCATTCTTCTATATCCTAGAGGAGCTACAAATGTTTGCTGTGCATTATGCAATATAATTACCCCAGTCCCTCCTCCTGGTACAGAAATGGCTCAACTTATTTGTGGGGGTTGTAGGACGTTGTTAATGCATACACGTGGGGCAACAAGTGTGAGGTGCTCCTGCTGTCATACTGTGAATCTTGCTCCAGCATCCAGTCAGGTTGCCCACGTCAACTGTGGAAACTGCCGGACAACACTTATGTATCCATATGGAGCTCCTTCAGTCAAATGTGCAGTCTGTCACTATGTAACTAATGTTGGTATGACCAATATGAGGGTTCCAATTCCAGTGCACAGACCTAATGGGACAGCCAATTCAGGAACGGCGCCCTCTACTTCCGCAAGCCAGACCGTTGTGGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTCGTCGTTGGTGTCACAACTGGGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

171

Amino Acids

17.7

Weight (kDa)

8.92

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380
malus_domestica	MD05G1263500.v1.1 MD10G1241200.v1.1
prunus_persica	Prupe.4G102000_v2.0.a1
pyrus_communis	pycom05g24750 pycom10g20220
rosa_chinensis	RchiOBHm_Chr5g0018361
rosa_laevigata	RLG00000032355
rosa_multiflora	Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059380
rosa_rugosa	Rorug05G0041800.1
rosa_samantha	Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100
rosa_wichuraiana	Rw5G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	400
AciI	CCGC	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	279
AcvI	CACGTG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	110, 348
AflIII	ACRYGT	1 cut(s)	167
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	3 cut(s)	13, 59, 290
AluI	AGCT	3 cut(s)	13, 59, 290
Alw21I	GWGCWC	3 cut(s)	194, 292, 369
Alw44I	GTGCAC	1 cut(s)	365
ApaLI	GTGCAC	1 cut(s)	365
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	369
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	292
BbrPI	CACGTG	1 cut(s)	170
Bbv12I	GWGCWC	3 cut(s)	194, 292, 369
BceAI	ACGGC	1 cut(s)	414
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	354, 402
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	2 cut(s)	92, 510
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	2 cut(s)	92, 510
BpmI	CTGGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	170
BsaHI	GRCGYC	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 348
Bse1I	ACTGG	4 cut(s)	98, 228, 362, 505
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	110, 348
BseMI	GCAATG	1 cut(s)	484
BseNI	ACTGG	4 cut(s)	98, 228, 362, 505
BseRI	GAGGAG	2 cut(s)	69, 96
BseSI	GKGCMC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	400
BsiHKAI	GWGCWC	3 cut(s)	194, 292, 369
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	2 cut(s)	86, 394
BslI	CCNNNNNNNGG	2 cut(s)	110, 348
BsmFI	GGGAC	2 cut(s)	86, 394
BsmI	GAATGC	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	194, 292, 369
BspACI	CCGC	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	354, 402
BspT107I	GGYRCC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	4 cut(s)	98, 228, 362, 505
BssNI	GRCGYC	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	208, 251, 427
BstACI	GRCGYC	1 cut(s)	401
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	11, 418
BstF5I	GGATG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	11, 418
CfoI	GCGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	7 cut(s)	9, 13, 59, 125, 290, 386, 420
CviKI_1	RGCY	7 cut(s)	9, 13, 59, 125, 290, 386, 420
CviQI	GTAC	1 cut(s)	114
DinI	GGCGCC	1 cut(s)	402
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	279
Eco72I	CACGTG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	402
EheI	GGCGCC	1 cut(s)	402
FaqI	GGGAC	2 cut(s)	86, 394
FauNDI	CATATG	1 cut(s)	283
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	404
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	401
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	247, 367
Hpy188III	TCNNGA	1 cut(s)	393
Hpy8I	GTNNAC	2 cut(s)	247, 367
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	3 cut(s)	208, 251, 427
HpyCH4IV	ACGT	3 cut(s)	152, 169, 243
HpyCH4V	TGCA	6 cut(s)	4, 77, 84, 163, 308, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	3 cut(s)	152, 169, 243
Hsp92I	GRCGYC	1 cut(s)	401
HspAI	GCGC	1 cut(s)	401
KasI	GGCGCC	1 cut(s)	400
LmnI	GCTCC	6 cut(s)	33, 56, 197, 223, 287, 295
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	3 cut(s)	152, 169, 243
MaeIII	GTNAC	3 cut(s)	314, 322, 493
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	194, 292, 369
MluCI	AATT	4 cut(s)	90, 357, 388, 467
Mly113I	GGCGCC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	47, 114, 117, 180, 342, 415
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	10
NarI	GGCGCC	1 cut(s)	401
NdeI	CATATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	354, 402
NmuCI	GTSAC	2 cut(s)	314, 493
NsiI	ATGCAT	1 cut(s)	165
PctI	GAATGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	211
PluTI	GGCGCC	1 cut(s)	404
PmaCI	CACGTG	1 cut(s)	170
PmlI	CACGTG	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	109
PspCI	CACGTG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	354, 402
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	3 cut(s)	194, 292, 369
SetI	ASST	9 cut(s)	15, 61, 155, 172, 191, 237, 246, 292, 376
SfaNI	GCATC	1 cut(s)	233
SfoI	GGCGCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	4 cut(s)	90, 357, 388, 467
SsiI	CCGC	1 cut(s)	414
SspDI	GGCGCC	1 cut(s)	400
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	3 cut(s)	208, 251, 427
TaiI	ACGT	3 cut(s)	155, 172, 246
TasI	AATT	4 cut(s)	90, 357, 388, 467
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	2 cut(s)	314, 493
Tsp45I	GTSAC	2 cut(s)	314, 493
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	369
VneI	GTGCAC	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.