Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Forward (+)

11128941 .. 11130770

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACACTCTGGTGAGGAGCGGTGGCGCGTGGCTGGTATCGCCGTCAATGGCAGTGGCGGCTCTGAAGAGGATGAGAGTGTCTGGTTTAGCCACGTCATCATCATCTTCTGTTCCTAATTGGAAAGGTGGAGTTTCCATGGTCCAAGGAGCTTCCAGAGGCATTGGTCTCGAATTTGTACGACAGTTGCTGGAGAACAATAAGAACGGGTATGTTGTTGCTACTTGCCGAAATCCAAAAGAAGCAACAAGTCTCTCTGATTTGAAGAACCGTTTCTCTGAAAGACTTTTCATCCAAAAGCTTGATGTTACAGATGAAACTACCATTGAGGAATCAGCGGAATCTGTGAGAGAAAAATATGGTTCTCTCAATCTACTTATAAATGCAGCTGGTATACTTTCAATTCCTGGCGTATTGCAGCCAGAAACAACATTGAACAAGGTCGAAAAATCATCGTTGATGCTTGCTTACGAGGTTAACGCTGTTGGTCCAATTCTAGTGATGAAGCATATGTGGCCTCTCCTTAAGGCTGGTGGAGGTAGTGGAACAGATAGAGAAGTTGCTGTTGTAGCCAATTTAAGCGCTCGAGTTGGATCCATTGGAGATAACCGACTTGGTGGTTGGCACTCTTACAGGGCTTCAAAATCCGCACTCAATCAACTGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGATCCTGTGGCATGCATTCTACTACATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTTTCAAAGGAATGTTCCTGACGGAAAACTTTTCACAAGAGAGTACTCTGTTCAGAAGTTACTGCACATCATCAACAATACTAAGAAACAAGACAGCGGCAAGTTCTTTGCTTGGGATGGCCAGGAGATACCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

298

Amino Acids

32.48

Weight (kDa)

9.64

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	47 - 255	1.2e-28	short chain dehydrogenase
adh_short_C2	PF13561	50 - 256	1.9e-21	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	2 cut(s)	394, 738
AccII	CGCG	1 cut(s)	29
AciI	CCGC	5 cut(s)	21, 59, 338, 648, 855
AclWI	GGATC	3 cut(s)	588, 601, 695
AcoI	YGGCCR	2 cut(s)	755, 877
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	180, 803
AfeI	AGCGCT	1 cut(s)	583
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	265, 402, 436, 642, 764
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	3 cut(s)	406, 727, 879
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	3 cut(s)	152, 301, 389
AluI	AGCT	3 cut(s)	152, 301, 389
Alw26I	GTCTC	2 cut(s)	173, 257
AlwI	GGATC	3 cut(s)	588, 601, 695
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	585
Aor51HI	AGCGCT	1 cut(s)	583
AoxI	GGCC	3 cut(s)	515, 755, 877
ApeKI	GCWGC	2 cut(s)	386, 418
ApoI	RAATTY	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	29, 584
AspS9I	GGNCC	2 cut(s)	142, 488
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	2 cut(s)	142, 488
BaeI	ACNNNNGTAYC	1 cut(s)	878
BalI	TGGCCA	1 cut(s)	879
BamHI	GGATCC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	398, 430
BccI	CCATC	1 cut(s)	869
BceAI	ACGGC	2 cut(s)	28, 742
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	3 cut(s)	408, 729, 881
BcoDI	GTCTC	2 cut(s)	173, 257
BfaI	CTAG	1 cut(s)	497
BfoI	RGCGCY	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	4 cut(s)	60, 387, 419, 856
BlsI	GCNGC	4 cut(s)	61, 388, 420, 857
BmcAI	AGTACT	1 cut(s)	803
Bme1390I	CCNGG	3 cut(s)	408, 729, 881
Bme18I	GGWCC	2 cut(s)	142, 488
BmeT110I	CYCGRG	1 cut(s)	585
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	142, 488
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	3 cut(s)	408, 729, 881
BmsI	GCATC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	138, 145, 890
BseBI	CCWGG	3 cut(s)	408, 729, 881
BseDI	CCNNGG	3 cut(s)	138, 145, 890
BseGI	GGATG	4 cut(s)	78, 291, 724, 880
BseRI	GAGGAG	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	755
BseXI	GCAGC	2 cut(s)	398, 430
BsgI	GTGCAG	1 cut(s)	806
Bsh1236I	CGCG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	758
BshFI	GGCC	3 cut(s)	517, 757, 879
BsiEI	CGRYCG	1 cut(s)	758
BsiHKCI	CYCGRG	1 cut(s)	585
BsmAI	GTCTC	2 cut(s)	173, 257
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	3 cut(s)	517, 757, 879
Bso31I	GGTCTC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	593, 700, 745
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	5 cut(s)	21, 59, 338, 648, 855
BspANI	GGCC	3 cut(s)	517, 757, 879
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	3 cut(s)	588, 601, 695
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	138, 145, 890
BssMI	GATC	3 cut(s)	593, 700, 745
BssNAI	GTATAC	1 cut(s)	395
BssT1I	CCWWGG	3 cut(s)	138, 145, 890
Bst1107I	GTATAC	1 cut(s)	395
Bst2UI	CCWGG	3 cut(s)	408, 729, 881
Bst4CI	ACNGT	3 cut(s)	186, 272, 736
Bst6I	CTCTTC	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	465, 712
BstDEI	CTNAG	1 cut(s)	840
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	4 cut(s)	78, 291, 724, 880
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	2 cut(s)	29, 584
BstKTI	GATC	3 cut(s)	596, 703, 748
BstMAI	GTCTC	2 cut(s)	173, 257
BstMBI	GATC	3 cut(s)	593, 700, 745
BstMCI	CGRYCG	1 cut(s)	758
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 59, 514, 569
BstNI	CCWGG	3 cut(s)	408, 729, 881
BstNSI	RCATGY	1 cut(s)	714
BstSCI	CCNGG	3 cut(s)	406, 727, 879
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	398, 430
BstX2I	RGATCY	2 cut(s)	593, 700
BstYI	RGATCY	2 cut(s)	593, 700
BstZ17I	GTATAC	1 cut(s)	395
BstZI	CGGCCG	1 cut(s)	755
BsuRI	GGCC	3 cut(s)	517, 757, 879
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	4 cut(s)	78, 291, 724, 880
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 741
Cac8I	GCNNGC	2 cut(s)	465, 712
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	2 cut(s)	29, 584
Cfr13I	GGNCC	2 cut(s)	142, 488
Csp6I	GTAC	2 cut(s)	179, 802
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	2 cut(s)	139, 711
CviQI	GTAC	2 cut(s)	179, 802
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	3 cut(s)	595, 702, 747
DpnII	GATC	3 cut(s)	593, 700, 745
EaeI	YGGCCR	2 cut(s)	755, 877
EagI	CGGCCG	1 cut(s)	755
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	755
Eco130I	CCWWGG	3 cut(s)	138, 145, 890
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	142, 488
Eco47III	AGCGCT	1 cut(s)	583
Eco52I	CGGCCG	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	585
EcoRII	CCWGG	3 cut(s)	406, 727, 879
EcoT14I	CCWWGG	3 cut(s)	138, 145, 890
EcoT22I	ATGCAT	1 cut(s)	716
ErhI	CCWWGG	3 cut(s)	138, 145, 890
FaeI	CATG	2 cut(s)	142, 714
FaiI	YATR	8 cut(s)	140, 213, 360, 380, 395, 510, 512, 712
FatI	CATG	2 cut(s)	138, 710
FauNDI	CATATG	1 cut(s)	510
FblI	GTMKAC	2 cut(s)	394, 738
Fnu4HI	GCNGC	4 cut(s)	60, 387, 419, 856
FokI	GGATG	4 cut(s)	85, 278, 711, 887
Fsp4HI	GCNGC	4 cut(s)	60, 387, 419, 856
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	2 cut(s)	28, 583
GluI	GCNGC	4 cut(s)	60, 387, 419, 856
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	517, 757, 879
HhaI	GCGC	2 cut(s)	29, 584
Hin1II	CATG	2 cut(s)	142, 714
Hin6I	GCGC	2 cut(s)	27, 582
HinP1I	GCGC	2 cut(s)	27, 582
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	332, 341
HpaI	GTTAAC	1 cut(s)	478
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	395, 478, 739
Hpy188I	TCNGA	4 cut(s)	66, 259, 280, 813
Hpy188III	TCNNGA	3 cut(s)	156, 170, 776
Hpy8I	GTNNAC	3 cut(s)	395, 478, 739
HpyCH4III	ACNGT	3 cut(s)	186, 272, 736
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	386, 418, 714, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 59, 514, 569
HpyF3I	CTNAG	1 cut(s)	840
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	142, 714
HspAI	GCGC	2 cut(s)	27, 582
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	593, 700, 745
LmnI	GCTCC	2 cut(s)	18, 149
Lsp1109I	GCAGC	2 cut(s)	398, 430
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	307, 816
MalI	GATC	3 cut(s)	595, 702, 747
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	3 cut(s)	593, 700, 745
MboII	GAAGA	3 cut(s)	79, 99, 277
MflI	RGATCY	2 cut(s)	593, 700
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	5 cut(s)	118, 173, 402, 492, 574
MluNI	TGGCCA	1 cut(s)	879
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	8 cut(s)	9, 63, 152, 322, 466, 528, 530, 687
Mox20I	TGGCCA	1 cut(s)	879
Mph1103I	ATGCAT	1 cut(s)	716
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	3 cut(s)	477, 525, 578
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	879
MspA1I	CMGCKG	3 cut(s)	338, 389, 855
MspCI	CTTAAG	1 cut(s)	524
MspR9I	CCNGG	3 cut(s)	408, 729, 881
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	3 cut(s)	408, 729, 881
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	40, 59, 514, 569
NcoI	CCATGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	3 cut(s)	593, 700, 745
NlaIII	CATG	2 cut(s)	142, 714
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	733
NsiI	ATGCAT	1 cut(s)	716
NspI	RCATGY	1 cut(s)	714
OliI	CACNNNNGTG	1 cut(s)	11
PaeI	GCATGC	1 cut(s)	714
PaeR7I	CTCGAG	1 cut(s)	585
PctI	GAATGC	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	332, 341
PkrI	GCNGC	4 cut(s)	61, 388, 420, 857
PsiI	TTATAA	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	406, 727, 879
PspGI	CCWGG	3 cut(s)	406, 727, 879
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	142, 488
PspXI	VCTCGAGB	1 cut(s)	585
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	593, 700
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	180, 803
RsaNI	GTAC	2 cut(s)	179, 802
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	477, 525, 578
SatI	GCNGC	4 cut(s)	60, 387, 419, 856
Sau3AI	GATC	3 cut(s)	593, 700, 745
Sau96I	GGNCC	2 cut(s)	142, 488
ScaI	AGTACT	1 cut(s)	803
ScrFI	CCNGG	3 cut(s)	408, 729, 881
SfaNI	GCATC	1 cut(s)	450
Sfr274I	CTCGAG	1 cut(s)	585
SinI	GGWCC	2 cut(s)	142, 488
SlaI	CTCGAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	524, 585
SmoI	CTYRAG	2 cut(s)	524, 585
SphI	GCATGC	1 cut(s)	714
Sse9I	AATT	5 cut(s)	118, 173, 402, 492, 574
SsiI	CCGC	5 cut(s)	21, 59, 338, 648, 855
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	406, 727, 879
StyI	CCWWGG	3 cut(s)	138, 145, 890
TaaI	ACNGT	3 cut(s)	186, 272, 736
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	171, 444, 586
TasI	AATT	5 cut(s)	118, 173, 402, 492, 574
TatI	WGTACW	1 cut(s)	801
TauI	GCSGC	2 cut(s)	62, 858
TfiI	GAWTC	2 cut(s)	332, 341
Tru1I	TTAA	3 cut(s)	477, 525, 578
Tru9I	TTAA	3 cut(s)	477, 525, 578
TscAI	CASTG	2 cut(s)	60, 748
TseI	GCWGC	2 cut(s)	386, 418
TspDTI	ATGAA	4 cut(s)	17, 280, 330, 518
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	2 cut(s)	60, 748
Vha464I	CTTAAG	1 cut(s)	524
VpaK11BI	GGWCC	2 cut(s)	142, 488
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	585
XmiI	GTMKAC	2 cut(s)	394, 738
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	497
ZrmI	AGTACT	1 cut(s)	803
Zsp2I	ATGCAT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.