Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010280.1

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Forward (+)

73377 .. 77481

Gene Structure 4105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010280.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atggcgatgagacatctcggccggaatggattaatggcccaaagggcctcactttcttcctctgcggtcaaatgggaaggtggggtttccatggttcagggagcttccagaggaattggccttgaattcgttaaacagttgttggagaaggaaaaaggtcatgttattgctagttgccgtaatcctaatggggcaacaggtcttctccatctgcaaagtaaattcgctgaacgccttactgttctacaattagatgtgacgaatgaaagcaccatacaggaatctgccaagtctatcagagaaagatatggctcgttaaaccttctcatcaatgcatctgggattctttcaatacctaatgtattgcaaccagaaaccacactgagcaaagtagagaagtcatctttgctgcttgcttatgaggttaatgctgtaggccccattttagtgatcaagcatatgtggcctctcctaaaggtcggtggtggactgggaactgaaagggatgttgcagttgtggccaatgtgagtgctagagttggatccataggggataaccgtcttggcggttggcattcatatcgagcttcgaaaactgcacttaatcaattgacaaagaatatatcagttgaattggcacggaggaaggatccgatcgtttgcattttattgcacccaggtacagtggacacagatctctccaagccatttcagaaaaatgttccagaaggcaagcttttcacaacagagttctcagtacagaagctcctgagcatcatccacaatgcaaaaaggaatgataatggaaagttctttgcctgggatgtgacaaagaatatatcagttgaattggcacggaggaaggatccaatcgtttgcattttattgcacccaggtacagtggacacagatctctccaagccatttcagaaaaatgttccagacggcaagcttttcacaacagagttctcagtacagaagctcctgagcattatccacaatgcaaaaaggaatgataatggaaagttctttgcctgggatggtcaggaaattccttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

353

Amino Acids

38.8

Weight (kDa)

9.66

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 567
AclWI	GGATC	6 cut(s)	537, 550, 644, 657, 860, 873
AcoI	YGGCCR	2 cut(s)	19, 519
AcsI	RAATTY	3 cut(s)	125, 221, 1050
AfaI	GTAC	4 cut(s)	682, 759, 898, 975
AgsI	TTSAA	4 cut(s)	125, 351, 632, 848
AjnI	CCWGG	4 cut(s)	676, 818, 892, 1034
AluBI	AGCT	6 cut(s)	104, 587, 736, 766, 952, 982
AluI	AGCT	6 cut(s)	104, 587, 736, 766, 952, 982
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	6 cut(s)	537, 550, 644, 657, 860, 873
AoxI	GGCC	7 cut(s)	19, 36, 45, 118, 436, 464, 519
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	3 cut(s)	125, 221, 1050
AseI	ATTAAT	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	37, 45, 437
AsuII	TTCGAA	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	521
BamHI	GGATCC	3 cut(s)	542, 649, 865
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	2 cut(s)	216, 1034
BceAI	ACGGC	2 cut(s)	162, 961
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	4 cut(s)	678, 820, 894, 1036
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	2 cut(s)	171, 534
BfmI	CTRYAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	44
BglII	AGATCT	2 cut(s)	694, 910
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	678, 820, 894, 1036
BmgT120I	GGNCC	3 cut(s)	37, 45, 437
BmiI	GGNNCC	4 cut(s)	439, 544, 651, 867
BmrFI	CCNGG	4 cut(s)	678, 820, 894, 1036
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	344, 783
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	2 cut(s)	770, 986
Bpu14I	TTCGAA	1 cut(s)	590
BsaJI	CCNNGG	6 cut(s)	90, 676, 819, 892, 1035, 1055
BsaXI	ACNNNNNCTCC	4 cut(s)	750, 780, 966, 996
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	4 cut(s)	678, 820, 894, 1036
BseDI	CCNNGG	6 cut(s)	90, 676, 819, 892, 1035, 1055
BseGI	GGATG	4 cut(s)	511, 777, 829, 1045
BseMII	CTCAG	5 cut(s)	374, 761, 768, 977, 984
BseNI	ACTGG	1 cut(s)	495
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	582
Bsh1285I	CGRYCG	2 cut(s)	22, 657
BshFI	GGCC	7 cut(s)	21, 38, 47, 120, 438, 466, 521
BsiEI	CGRYCG	2 cut(s)	22, 657
BsiSI	CCGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	4
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	7 cut(s)	21, 38, 47, 120, 438, 466, 521
Bsp119I	TTCGAA	1 cut(s)	590
Bsp143I	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	2 cut(s)	65, 567
BspANI	GGCC	7 cut(s)	21, 38, 47, 120, 438, 466, 521
BspCNI	CTCAG	5 cut(s)	375, 762, 767, 978, 983
BspLI	GGNNCC	4 cut(s)	439, 544, 651, 867
BspPI	GGATC	6 cut(s)	537, 550, 644, 657, 860, 873
BspT104I	TTCGAA	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	6 cut(s)	90, 676, 819, 892, 1035, 1055
BssMI	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
BssT1I	CCWWGG	2 cut(s)	90, 1055
Bst2UI	CCWGG	4 cut(s)	678, 820, 894, 1036
Bst4CI	ACNGT	5 cut(s)	138, 241, 560, 685, 901
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	414, 734, 950
BstDEI	CTNAG	5 cut(s)	383, 754, 770, 970, 986
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	4 cut(s)	511, 777, 829, 1045
BstKTI	GATC	7 cut(s)	453, 545, 652, 657, 697, 868, 913
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
BstMCI	CGRYCG	2 cut(s)	22, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 463, 518
BstNI	CCWGG	4 cut(s)	678, 820, 894, 1036
BstSCI	CCNGG	4 cut(s)	676, 818, 892, 1034
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	5 cut(s)	542, 649, 694, 865, 910
BstYI	RGATCY	5 cut(s)	542, 649, 694, 865, 910
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	7 cut(s)	21, 38, 47, 120, 438, 466, 521
BtgI	CCRYGG	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	4 cut(s)	511, 777, 829, 1045
BtsIMutI	CAGTG	3 cut(s)	380, 690, 906
Cac8I	GCNNGC	3 cut(s)	414, 734, 950
Cfr13I	GGNCC	3 cut(s)	37, 45, 437
Csp6I	GTAC	4 cut(s)	681, 758, 897, 974
CviAII	CATG	2 cut(s)	91, 161
CviQI	GTAC	4 cut(s)	681, 758, 897, 974
DdeI	CTNAG	5 cut(s)	383, 754, 770, 970, 986
DpnI	GATC	7 cut(s)	452, 544, 651, 656, 696, 867, 912
DpnII	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
EaeI	YGGCCR	2 cut(s)	19, 519
EagI	CGGCCG	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	90, 1055
Eco52I	CGGCCG	1 cut(s)	19
EcoO109I	RGGNCCY	2 cut(s)	45, 437
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	4 cut(s)	676, 818, 892, 1034
EcoT14I	CCWWGG	2 cut(s)	90, 1055
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	90, 1055
FaeI	CATG	2 cut(s)	94, 164
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FatI	CATG	2 cut(s)	90, 160
FauNDI	CATATG	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	4 cut(s)	518, 764, 836, 1052
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	2 cut(s)	171, 534
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	7 cut(s)	21, 38, 47, 120, 438, 466, 521
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	94, 164
HindIII	AAGCTT	2 cut(s)	734, 950
HinfI	GANTC	2 cut(s)	281, 343
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	488, 688, 904
Hpy188I	TCNGA	4 cut(s)	299, 654, 714, 930
Hpy188III	TCNNGA	6 cut(s)	108, 725, 769, 941, 985, 1046
Hpy8I	GTNNAC	3 cut(s)	488, 688, 904
HpyAV	CCTTC	6 cut(s)	71, 142, 332, 640, 722, 856
HpyCH4III	ACNGT	5 cut(s)	138, 241, 560, 685, 901
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 463, 518
HpyF3I	CTNAG	5 cut(s)	383, 754, 770, 970, 986
Hsp92II	CATG	2 cut(s)	94, 164
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
LmnI	GCTCC	3 cut(s)	101, 771, 987
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	2 cut(s)	344, 783
MaeI	CTAG	2 cut(s)	171, 534
MaeIII	GTNAC	2 cut(s)	256, 826
MalI	GATC	7 cut(s)	452, 544, 651, 656, 696, 867, 912
MboI	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
MboII	GAAGA	2 cut(s)	48, 194
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	5 cut(s)	542, 649, 694, 865, 910
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	8 cut(s)	114, 125, 221, 248, 608, 632, 848, 1050
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	123, 520
MnlI	CCTC	7 cut(s)	58, 70, 104, 415, 477, 636, 852
Mox20I	TGGCCA	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	5 cut(s)	32, 132, 317, 426, 603
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	521
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	4 cut(s)	678, 820, 894, 1036
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	4 cut(s)	678, 820, 894, 1036
MwoI	GCNNNNNNNGC	3 cut(s)	44, 463, 518
NcoI	CCATGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
NlaIII	CATG	2 cut(s)	94, 164
NlaIV	GGNNCC	4 cut(s)	439, 544, 651, 867
NmuCI	GTSAC	2 cut(s)	256, 826
NsiI	ATGCAT	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	590
PctI	GAATGC	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	281, 343
PkrI	GCNGC	1 cut(s)	411
Ple19I	CGATCG	1 cut(s)	657
PshBI	ATTAAT	1 cut(s)	32
Psp6I	CCWGG	4 cut(s)	676, 818, 892, 1034
PspGI	CCWGG	4 cut(s)	676, 818, 892, 1034
PspN4I	GGNNCC	4 cut(s)	439, 544, 651, 867
PspPI	GGNCC	3 cut(s)	37, 45, 437
PsuI	RGATCY	5 cut(s)	542, 649, 694, 865, 910
PvuI	CGATCG	1 cut(s)	657
RsaI	GTAC	4 cut(s)	682, 759, 898, 975
RsaNI	GTAC	4 cut(s)	681, 758, 897, 974
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	5 cut(s)	32, 132, 317, 426, 603
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	7 cut(s)	450, 542, 649, 654, 694, 865, 910
Sau96I	GGNCC	3 cut(s)	37, 45, 437
ScrFI	CCNGG	4 cut(s)	678, 820, 894, 1036
SfaNI	GCATC	2 cut(s)	344, 783
SfcI	CTRYAG	1 cut(s)	432
SfiI	GGCCNNNNNGGCC	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	8 cut(s)	114, 125, 221, 248, 608, 632, 848, 1050
SsiI	CCGC	2 cut(s)	65, 567
SspMI	CTAG	2 cut(s)	171, 534
StyD4I	CCNGG	4 cut(s)	676, 818, 892, 1034
StyI	CCWWGG	2 cut(s)	90, 1055
TaaI	ACNGT	5 cut(s)	138, 241, 560, 685, 901
TaqI	TCGA	2 cut(s)	583, 590
TasI	AATT	8 cut(s)	114, 125, 221, 248, 608, 632, 848, 1050
TatI	WGTACW	2 cut(s)	757, 973
TfiI	GAWTC	2 cut(s)	281, 343
Tru1I	TTAA	5 cut(s)	32, 132, 317, 426, 603
Tru9I	TTAA	5 cut(s)	32, 132, 317, 426, 603
TscAI	CASTG	3 cut(s)	387, 690, 906
TseFI	GTSAC	2 cut(s)	256, 826
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	2 cut(s)	256, 826
TspDTI	ATGAA	2 cut(s)	279, 567
TspGWI	ACGGA	2 cut(s)	655, 871
TspRI	CASTG	3 cut(s)	387, 690, 906
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	3 cut(s)	125, 221, 1050
XspI	CTAG	2 cut(s)	171, 534
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.