Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Reverse (-)

81544544 .. 81550254

Gene Structure 5711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACAAATTGACGCATTTGTTTCTGAACCAACAATGCTCATTCATGGCGATCAGACATCTCGGCCGGAATGGATTAATGGCCCAAAGGGCCTTACTTTCTTCCTCTGCGGTCAAATGGGAAGGTGGGGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAATTCGTTAAACAGTTGTTGGAGAAGGAAAAAGGTCATGTTATTGCTAGTTGCCGTAATCCTAATGGGGCAACAGGTCTTCTTCATCTGCAAAGTAAATTCGCTGAACGCCTTACTGTTCTACAATTAGATGTGACGAATGAAAGCACCATACAGGAATCTGCAAAGTCTATCAGAGAAAGATATGGCTCGTTAAACCTTCTCATCAATGCATCTGGGATTCTTTCAATACCTAATGTATTGCAACCAGAAACCACACTGAGCAAAGTAGAGAAGTCATCTTTGCTGCTTGCTTACGAGGTTAATGCTGTAGGCCCCATTTTAGTGATCAAGCATATGTGGCCTCTCCTAAAGGTCGGTGGTGGACTGGGAACTGAAAGGGATGTTGCAGTTGTGGCCAATGTGAGTGCTAGAGTGGGATCCATAGGGGATAACCGTCTTGGCGGTTGGCATTCTTATCGAGCTTCGAAAACTGCACTTAATCAATTGACAAAGAATATATCAGTTGAATTGGCACGGAGGAAGGATCCGATCGTTTGCATTTTATTGCACCCAGGTACAGTGGACACAGATCTCTCCAAGCCATTTCAGAAAAATGTTCCAGAAGGCAAGCTTTTCACAACAGAGTTCTCAGTACAGAGACTCCTGAGCATCATCCACAATGCAAAAAGGAATGATAATGGAAAGTTCTTTGCCTGGGATGGTCAGGAAATTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

296

Amino Acids

32.54

Weight (kDa)

9.68

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	46 - 254	6.9e-28	short chain dehydrogenase
adh_short_C2	PF13561	49 - 255	9.5e-19	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 612
AclWI	GGATC	4 cut(s)	582, 595, 689, 702
AcoI	YGGCCR	2 cut(s)	64, 564
AcsI	RAATTY	3 cut(s)	170, 266, 879
AfaI	GTAC	3 cut(s)	5, 727, 804
AgsI	TTSAA	3 cut(s)	170, 396, 677
AjnI	CCWGG	2 cut(s)	721, 863
AluBI	AGCT	3 cut(s)	149, 632, 781
AluI	AGCT	3 cut(s)	149, 632, 781
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	4 cut(s)	582, 595, 689, 702
AoxI	GGCC	7 cut(s)	64, 81, 90, 163, 481, 509, 564
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	3 cut(s)	170, 266, 879
AseI	ATTAAT	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	82, 90, 482
AsuII	TTCGAA	1 cut(s)	635
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	2 cut(s)	587, 694
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	863
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	4 cut(s)	455, 489, 608, 642
BciT130I	CCWGG	2 cut(s)	723, 865
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	802
BfaI	CTAG	2 cut(s)	216, 579
BfmI	CTRYAG	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	723, 865
BmgT120I	GGNCC	3 cut(s)	82, 90, 482
BmiI	GGNNCC	3 cut(s)	484, 589, 696
BmrFI	CCNGG	2 cut(s)	723, 865
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	389, 828
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	815
Bpu14I	TTCGAA	1 cut(s)	635
BsaJI	CCNNGG	4 cut(s)	135, 721, 864, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bse1I	ACTGG	1 cut(s)	540
BseBI	CCWGG	2 cut(s)	723, 865
BseDI	CCNNGG	4 cut(s)	135, 721, 864, 884
BseGI	GGATG	3 cut(s)	556, 822, 874
BseMII	CTCAG	3 cut(s)	419, 806, 813
BseNI	ACTGG	1 cut(s)	540
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	441
BsgI	GTGCAG	1 cut(s)	627
Bsh1285I	CGRYCG	2 cut(s)	67, 702
BshFI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
BsiEI	CGRYCG	2 cut(s)	67, 702
BsiSI	CCGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	802
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	110, 612
BspANI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
BspCNI	CTCAG	3 cut(s)	420, 807, 812
BspLI	GGNNCC	3 cut(s)	484, 589, 696
BspPI	GGATC	4 cut(s)	582, 595, 689, 702
BspT104I	TTCGAA	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	4 cut(s)	135, 721, 864, 884
BssMI	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
BssT1I	CCWWGG	2 cut(s)	135, 884
Bst2UI	CCWGG	2 cut(s)	723, 865
Bst4CI	ACNGT	4 cut(s)	183, 286, 605, 730
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	459, 779
BstDEI	CTNAG	3 cut(s)	428, 799, 815
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	556, 822, 874
BstKTI	GATC	6 cut(s)	54, 498, 590, 697, 702, 742
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
BstMCI	CGRYCG	2 cut(s)	67, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 508, 563
BstNI	CCWGG	2 cut(s)	723, 865
BstSCI	CCNGG	2 cut(s)	721, 863
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	3 cut(s)	587, 694, 739
BstYI	RGATCY	3 cut(s)	587, 694, 739
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	556, 822, 874
BtsIMutI	CAGTG	2 cut(s)	425, 735
Cac8I	GCNNGC	2 cut(s)	459, 779
Cfr13I	GGNCC	3 cut(s)	82, 90, 482
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	4, 726, 803
CviAII	CATG	3 cut(s)	46, 136, 206
CviQI	GTAC	3 cut(s)	4, 726, 803
DdeI	CTNAG	3 cut(s)	428, 799, 815
DpnI	GATC	6 cut(s)	53, 497, 589, 696, 701, 741
DpnII	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
EaeI	YGGCCR	2 cut(s)	64, 564
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	135, 884
Eco52I	CGGCCG	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	90, 482
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	721, 863
EcoT14I	CCWWGG	2 cut(s)	135, 884
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	135, 884
FaeI	CATG	3 cut(s)	49, 139, 209
FaiI	YATR	9 cut(s)	47, 137, 207, 320, 354, 504, 506, 593, 668
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	3 cut(s)	45, 135, 205
FauNDI	CATATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	3 cut(s)	563, 809, 881
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	2 cut(s)	216, 579
GluI	GCNGC	1 cut(s)	455
HaeIII	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	49, 139, 209
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	3 cut(s)	326, 388, 810
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	533, 733
Hpy188I	TCNGA	5 cut(s)	27, 56, 344, 699, 759
Hpy188III	TCNNGA	4 cut(s)	153, 770, 814, 875
Hpy8I	GTNNAC	2 cut(s)	533, 733
HpyAV	CCTTC	5 cut(s)	116, 187, 377, 685, 767
HpyCH4III	ACNGT	4 cut(s)	183, 286, 605, 730
HpyCH4V	TGCA	9 cut(s)	259, 332, 380, 412, 557, 644, 708, 718, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 508, 563
HpyF3I	CTNAG	3 cut(s)	428, 799, 815
Hsp92II	CATG	3 cut(s)	49, 139, 209
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	2 cut(s)	389, 828
MaeI	CTAG	2 cut(s)	216, 579
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	6 cut(s)	53, 497, 589, 696, 701, 741
MboI	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
MboII	GAAGA	3 cut(s)	93, 239, 242
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	3 cut(s)	587, 694, 739
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	8 cut(s)	8, 159, 170, 266, 293, 653, 677, 879
MluNI	TGGCCA	1 cut(s)	566
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	115, 149, 460, 522, 681
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	5 cut(s)	77, 177, 362, 471, 648
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	723, 865
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	723, 865
MwoI	GCNNNNNNNGC	3 cut(s)	89, 508, 563
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
NlaIII	CATG	3 cut(s)	49, 139, 209
NlaIV	GGNNCC	3 cut(s)	484, 589, 696
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	635
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	326, 388
PkrI	GCNGC	1 cut(s)	456
Ple19I	CGATCG	1 cut(s)	702
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
PshBI	ATTAAT	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	721, 863
PspGI	CCWGG	2 cut(s)	721, 863
PspN4I	GGNNCC	3 cut(s)	484, 589, 696
PspPI	GGNCC	3 cut(s)	82, 90, 482
PsuI	RGATCY	3 cut(s)	587, 694, 739
PvuI	CGATCG	1 cut(s)	702
RsaI	GTAC	3 cut(s)	5, 727, 804
RsaNI	GTAC	3 cut(s)	4, 726, 803
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	5 cut(s)	77, 177, 362, 471, 648
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	6 cut(s)	51, 495, 587, 694, 699, 739
Sau96I	GGNCC	3 cut(s)	82, 90, 482
SchI	GAGTC	1 cut(s)	804
ScrFI	CCNGG	2 cut(s)	723, 865
SfaNI	GCATC	2 cut(s)	389, 828
SfcI	CTRYAG	1 cut(s)	477
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	491
Sse9I	AATT	8 cut(s)	8, 159, 170, 266, 293, 653, 677, 879
SsiI	CCGC	2 cut(s)	110, 612
SspMI	CTAG	2 cut(s)	216, 579
StyD4I	CCNGG	2 cut(s)	721, 863
StyI	CCWWGG	2 cut(s)	135, 884
TaaI	ACNGT	4 cut(s)	183, 286, 605, 730
TaqI	TCGA	2 cut(s)	628, 635
TasI	AATT	8 cut(s)	8, 159, 170, 266, 293, 653, 677, 879
TatI	WGTACW	2 cut(s)	3, 802
TfiI	GAWTC	2 cut(s)	326, 388
Tru1I	TTAA	5 cut(s)	77, 177, 362, 471, 648
Tru9I	TTAA	5 cut(s)	77, 177, 362, 471, 648
TscAI	CASTG	2 cut(s)	432, 735
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	3 cut(s)	34, 242, 324
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	2 cut(s)	432, 735
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	3 cut(s)	170, 266, 879
XspI	CTAG	2 cut(s)	216, 579
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.