Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Forward (+)

33786047 .. 33789092

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1243100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTACAAATTGAGACCCCTGTTGTTTCTGAACCAGCAGTGCTCGTCCATGGCGGCGATGAAACCTGTGAGACTGATGCGGGTAATGAGCCAAAGGGCTTCACTTTCTTCTTCTGCTGGGAAATGGGAAGGTGGGGTTTCCATGGTGCAGGGTGCTTCCAGAGGAATTGGCCTGGAATTCGTTAAACAATTGTTGGAGAAGGAGAAAGGTCATGTTGTTGCTAGTTGCCGTAATCCTGAGGGGGCAACTGGTCTTCATCATCTGAAAAGTAAATTTGGCGAACGCCTTAGTGTTCTACAATTGGATGTGACCAATGAAAGCACCATAGAGCAATCTGCAAAGTCTATCGGCAAAAGATATGGTTCTTTAAACCTTCTAATCAATGCATCTGGGATTCTTTCAATACCTCAAGTATTACAACCAGAAACGACGTTGAGGAAAGTAGAGAAGTCATCGTTGATGCTTGCTTACGAGGTTAATGCTGTAGGTCCTGTTTTAGTGATCAAGCATATGTGGCCTCTCTTGAAGGATGGAGGCGGCTCTGGAACTGACAGGGATGTTGCAGTTGTGGCCAACTTGAGCGCCAGGGTGGGATCTATAGGGGATAATCGCCTTGGGGGTTGGCATTCTTATCGAGCTTCAAAAACTGCACTTAATCAACTGACGAGAAATATATCGGTGGAATTTGCACGGAGGAAGGATCCGATTACATGCATTTTATTGCACCCAGGTACGGTGGACACAGATCTCTCCAAGCCATTTCAGAGAAATGTTCCTGAAAACAAACTTTTCACAACAGAATTCTCAGTACAGAAGCTCTTAAGCATCATTCTCAATGCAAAAAGCCACGATAACGGCAAGTTTTTCGCCTGGGATGGCCAGGAAATTCCGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

299

Amino Acids

32.75

Weight (kDa)

9.78

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	45 - 134	3e-06	KR domain
adh_short	PF00106	48 - 255	2.3e-28	short chain dehydrogenase
adh_short_C2	PF13561	51 - 256	4.8e-21	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 79, 537
AclWI	GGATC	3 cut(s)	601, 695, 708
AcoI	YGGCCR	2 cut(s)	570, 877
AcsI	RAATTY	5 cut(s)	176, 272, 683, 800, 885
AfaI	GTAC	3 cut(s)	5, 733, 810
AfiI	CCNNNNNNNGG	1 cut(s)	733
AflII	CTTAAG	1 cut(s)	820
AgsI	TTSAA	3 cut(s)	402, 526, 642
AjnI	CCWGG	5 cut(s)	171, 584, 727, 869, 879
AluBI	AGCT	2 cut(s)	638, 817
AluI	AGCT	2 cut(s)	638, 817
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	7, 64
AlwI	GGATC	3 cut(s)	601, 695, 708
AoxI	GGCC	4 cut(s)	169, 515, 570, 877
ApoI	RAATTY	5 cut(s)	176, 272, 683, 800, 885
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	237
BalI	TGGCCA	2 cut(s)	572, 879
BamHI	GGATCC	1 cut(s)	700
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	44
BccI	CCATC	2 cut(s)	524, 869
BceAI	ACGGC	2 cut(s)	213, 871
BcgI	CGANNNNNNTGC	6 cut(s)	461, 495, 614, 648, 847, 881
BciT130I	CCWGG	5 cut(s)	173, 586, 729, 871, 881
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	7, 64
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	2 cut(s)	483, 597
BfoI	RGCGCY	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	820
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	2 cut(s)	54, 538
BlsI	GCNGC	2 cut(s)	55, 539
Bme1390I	CCNGG	5 cut(s)	173, 586, 729, 871, 881
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	5 cut(s)	173, 586, 729, 871, 881
BmsI	GCATC	4 cut(s)	66, 395, 450, 834
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	393, 598
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	7 cut(s)	48, 141, 585, 613, 727, 870, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	237
BseBI	CCWGG	5 cut(s)	173, 586, 729, 871, 881
BseDI	CCNNGG	7 cut(s)	48, 141, 585, 613, 727, 870, 890
BseGI	GGATG	4 cut(s)	310, 535, 562, 880
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMII	CTCAG	2 cut(s)	228, 819
BseNI	ACTGG	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	116
BsgI	GTGCAG	2 cut(s)	167, 633
BshFI	GGCC	4 cut(s)	171, 517, 572, 879
BsiHKAI	GWGCWC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	7, 64
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	171, 517, 572, 879
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	501, 593, 700, 745
Bsp19I	CCATGG	2 cut(s)	48, 141
BspACI	CCGC	3 cut(s)	53, 79, 537
BspANI	GGCC	4 cut(s)	171, 517, 572, 879
BspCNI	CTCAG	2 cut(s)	229, 818
BspLI	GGNNCC	1 cut(s)	702
BspPI	GGATC	3 cut(s)	601, 695, 708
BspTI	CTTAAG	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	7 cut(s)	48, 141, 585, 613, 727, 870, 890
BssMI	GATC	4 cut(s)	501, 593, 700, 745
BssT1I	CCWWGG	3 cut(s)	48, 141, 613
Bst2UI	CCWGG	5 cut(s)	173, 586, 729, 871, 881
Bst4CI	ACNGT	1 cut(s)	736
BstAFI	CTTAAG	1 cut(s)	820
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	3 cut(s)	237, 287, 805
BstDSI	CCRYGG	3 cut(s)	48, 141, 890
BstF5I	GGATG	4 cut(s)	310, 535, 562, 880
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	4 cut(s)	504, 596, 703, 748
BstMAI	GTCTC	2 cut(s)	7, 64
BstMBI	GATC	4 cut(s)	501, 593, 700, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 569
BstNI	CCWGG	5 cut(s)	173, 586, 729, 871, 881
BstNSI	RCATGY	1 cut(s)	714
BstSCI	CCNGG	5 cut(s)	171, 584, 727, 869, 879
BstSFI	CTRYAG	2 cut(s)	483, 597
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	3 cut(s)	593, 700, 745
BstYI	RGATCY	3 cut(s)	593, 700, 745
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	171, 517, 572, 879
BtgI	CCRYGG	3 cut(s)	48, 141, 890
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	310, 535, 562, 880
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	3 cut(s)	4, 732, 809
CviAII	CATG	4 cut(s)	49, 142, 212, 711
CviQI	GTAC	3 cut(s)	4, 732, 809
DdeI	CTNAG	3 cut(s)	237, 287, 805
DpnI	GATC	4 cut(s)	503, 595, 702, 747
DpnII	GATC	4 cut(s)	501, 593, 700, 745
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	570, 877
Eco130I	CCWWGG	3 cut(s)	48, 141, 613
Eco31I	GGTCTC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRI	GAATTC	2 cut(s)	176, 800
EcoRII	CCWGG	5 cut(s)	171, 584, 727, 869, 879
EcoT14I	CCWWGG	3 cut(s)	48, 141, 613
EcoT22I	ATGCAT	2 cut(s)	388, 716
ErhI	CCWWGG	3 cut(s)	48, 141, 613
FaeI	CATG	4 cut(s)	52, 145, 215, 714
FatI	CATG	4 cut(s)	48, 141, 211, 710
FauI	CCCGC	1 cut(s)	72
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	54, 538
FokI	GGATG	4 cut(s)	317, 542, 569, 887
Fsp4HI	GCNGC	2 cut(s)	54, 538
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	2 cut(s)	54, 538
GsaI	CCCAGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	4 cut(s)	171, 517, 572, 879
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	4 cut(s)	52, 145, 215, 714
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	4 cut(s)	30, 264, 705, 765
Hpy188III	TCNNGA	5 cut(s)	159, 236, 523, 543, 776
Hpy8I	GTNNAC	1 cut(s)	739
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	5 cut(s)	122, 193, 383, 520, 691
HpyCH4III	ACNGT	1 cut(s)	736
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	9 cut(s)	148, 338, 386, 563, 650, 689, 714, 724, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 569
HpyF3I	CTNAG	3 cut(s)	237, 287, 805
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	4 cut(s)	52, 145, 215, 714
HspAI	GCGC	1 cut(s)	582
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	501, 593, 700, 745
LweI	GCATC	4 cut(s)	66, 395, 450, 834
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	4 cut(s)	503, 595, 702, 747
MboI	GATC	4 cut(s)	501, 593, 700, 745
MboII	GAAGA	3 cut(s)	99, 102, 245
MfeI	CAATTG	2 cut(s)	188, 299
MflI	RGATCY	3 cut(s)	593, 700, 745
MhlI	GDGCHC	1 cut(s)	44
MlsI	TGGCCA	2 cut(s)	572, 879
MluCI	AATT	9 cut(s)	8, 165, 176, 188, 272, 299, 683, 800, 885
MluNI	TGGCCA	2 cut(s)	572, 879
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	155, 232, 417, 429, 466, 527, 528, 687
Mox20I	TGGCCA	2 cut(s)	572, 879
Mph1103I	ATGCAT	2 cut(s)	388, 716
MscI	TGGCCA	2 cut(s)	572, 879
MseI	TTAA	5 cut(s)	183, 368, 477, 654, 821
Msp20I	TGGCCA	2 cut(s)	572, 879
MspCI	CTTAAG	1 cut(s)	820
MspR9I	CCNGG	5 cut(s)	173, 586, 729, 871, 881
MunI	CAATTG	2 cut(s)	188, 299
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	5 cut(s)	173, 586, 729, 871, 881
MwoI	GCNNNNNNNGC	2 cut(s)	514, 569
NcoI	CCATGG	2 cut(s)	48, 141
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	4 cut(s)	501, 593, 700, 745
NlaIII	CATG	4 cut(s)	52, 145, 215, 714
NlaIV	GGNNCC	1 cut(s)	702
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	2 cut(s)	388, 716
NspI	RCATGY	1 cut(s)	714
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	55, 539
PpuMI	RGGWCCY	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	5 cut(s)	171, 584, 727, 869, 879
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	5 cut(s)	171, 584, 727, 869, 879
PspN4I	GGNNCC	1 cut(s)	702
PspPI	GGNCC	1 cut(s)	488
PspPPI	RGGWCCY	1 cut(s)	488
PsuI	RGATCY	3 cut(s)	593, 700, 745
RsaI	GTAC	3 cut(s)	5, 733, 810
RsaNI	GTAC	3 cut(s)	4, 732, 809
SaqAI	TTAA	5 cut(s)	183, 368, 477, 654, 821
SatI	GCNGC	2 cut(s)	54, 538
Sau3AI	GATC	4 cut(s)	501, 593, 700, 745
Sau96I	GGNCC	1 cut(s)	488
ScrFI	CCNGG	5 cut(s)	173, 586, 729, 871, 881
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	4 cut(s)	66, 395, 450, 834
SfcI	CTRYAG	2 cut(s)	483, 597
SinI	GGWCC	1 cut(s)	488
SmlI	CTYRAG	3 cut(s)	408, 577, 820
SmoI	CTYRAG	3 cut(s)	408, 577, 820
Sse9I	AATT	9 cut(s)	8, 165, 176, 188, 272, 299, 683, 800, 885
SsiI	CCGC	3 cut(s)	53, 79, 537
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	5 cut(s)	171, 584, 727, 869, 879
StyI	CCWWGG	3 cut(s)	48, 141, 613
TaaI	ACNGT	1 cut(s)	736
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	634
TasI	AATT	9 cut(s)	8, 165, 176, 188, 272, 299, 683, 800, 885
TatI	WGTACW	2 cut(s)	3, 808
TauI	GCSGC	2 cut(s)	56, 540
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	5 cut(s)	183, 368, 477, 654, 821
Tru9I	TTAA	5 cut(s)	183, 368, 477, 654, 821
TscAI	CASTG	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	74, 245, 330
TspGWI	ACGGA	2 cut(s)	706, 879
TspRI	CASTG	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	820
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	5 cut(s)	176, 272, 683, 800, 885
XceI	RCATGY	1 cut(s)	714
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	2 cut(s)	388, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.