Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Forward (+)

13345468 .. 13348698

Gene Structure 3231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTACAAATTGACGCATTTGTTTCTGAACCAGCAATGCTCATTCATGGCGATGAGACATCTCGGCCGGAATGGATTAATGGCCCAAAGGGCCTCACTTTCTTCCTCTGCTGTCAAATGGGAAGGTGGGGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAATTCGTTAAACAGTTGTTGAAGCAAAAAGGTCATGTTATTGCTAGTTGCCGTAATCCTAATGGGGCAACAGGTCTTCTCCATCTGCAAAGTAAATTCGCTGAACGCCTTACTGTTCTACAATTAGATGTGACGAATGAAACCACCATACAGGAATCTGCCAAGTCTATCAGAGAAAGATATGGCTCGTTAAACCTTCTCATCAATGCATCTGGGATTCTTTCAATACCTAATGTCTTGCAACCAGAAACCACACTGAGCAAAGTAGAGAAGTCATCTTTGCTGCTTGCTTATGAGGTTAATGCTGTAGGCCCCATTTTAGTGATCAAGCATATGTGGCCTCTCCTAAAGGTCGGTGGTGGACTGGGAACTGAAAGGGATGTTGCAGTTGTGGCCAATGTGAGTGCTAGAGTTGGATCCATAGGGGATAACCGTCTTGGCGGTTGGCATTCTTATCGAGCTTCGAAAACTGCACTTAATCAATTGACAAAGAATATATCAGTTGAATTGGCACGGAGGAAGGATCCGATCGTTTGCATTTTATTGCACCCAGGTACAGTGGACACAGATCTCTCCAAGCCATTTCAGAAAAATGTTCCAGAAGGCAAGCTTTTCACAGCAGAGTTCTCAGTACAGAAGCTCCTGAGCATTATCCACAATGCAAAAAGGAATGATAATGGAAAGTTCTTTGCCTGGGATGGTCAGGAAATTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

295

Amino Acids

32.36

Weight (kDa)

9.8

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	46 - 253	9.8e-29	short chain dehydrogenase
adh_short_C2	PF13561	49 - 253	4e-20	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	4 cut(s)	579, 592, 686, 699
AcoI	YGGCCR	2 cut(s)	64, 561
AcsI	RAATTY	3 cut(s)	170, 263, 876
AfaI	GTAC	3 cut(s)	5, 724, 801
AgsI	TTSAA	4 cut(s)	170, 190, 393, 674
AjnI	CCWGG	2 cut(s)	718, 860
AluBI	AGCT	4 cut(s)	149, 629, 778, 808
AluI	AGCT	4 cut(s)	149, 629, 778, 808
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	4 cut(s)	579, 592, 686, 699
AoxI	GGCC	7 cut(s)	64, 81, 90, 163, 478, 506, 561
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	170, 263, 876
AseI	ATTAAT	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	82, 90, 479
AsuII	TTCGAA	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	563
BamHI	GGATCC	2 cut(s)	584, 691
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	258, 860
BceAI	ACGGC	1 cut(s)	204
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	2 cut(s)	720, 862
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	213, 576
BfmI	CTRYAG	1 cut(s)	474
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	2 cut(s)	720, 862
BmgT120I	GGNCC	3 cut(s)	82, 90, 479
BmiI	GGNNCC	3 cut(s)	481, 586, 693
BmrFI	CCNGG	2 cut(s)	720, 862
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	386
BmuI	ACTGGG	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	812
Bpu14I	TTCGAA	1 cut(s)	632
BsaJI	CCNNGG	4 cut(s)	135, 718, 861, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	720, 862
BseDI	CCNNGG	4 cut(s)	135, 718, 861, 881
BseGI	GGATG	2 cut(s)	553, 871
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	3 cut(s)	416, 803, 810
BseNI	ACTGG	1 cut(s)	537
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	624
Bsh1285I	CGRYCG	2 cut(s)	67, 699
BshFI	GGCC	7 cut(s)	66, 83, 92, 165, 480, 508, 563
BsiEI	CGRYCG	2 cut(s)	67, 699
BsiSI	CCGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	7 cut(s)	66, 83, 92, 165, 480, 508, 563
Bsp119I	TTCGAA	1 cut(s)	632
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	492, 584, 691, 696, 736
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	1 cut(s)	609
BspANI	GGCC	7 cut(s)	66, 83, 92, 165, 480, 508, 563
BspCNI	CTCAG	3 cut(s)	417, 804, 809
BspLI	GGNNCC	3 cut(s)	481, 586, 693
BspPI	GGATC	4 cut(s)	579, 592, 686, 699
BspT104I	TTCGAA	1 cut(s)	632
BsrDI	GCAATG	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	4 cut(s)	135, 718, 861, 881
BssMI	GATC	5 cut(s)	492, 584, 691, 696, 736
BssT1I	CCWWGG	2 cut(s)	135, 881
Bst2UI	CCWGG	2 cut(s)	720, 862
Bst4CI	ACNGT	4 cut(s)	183, 283, 602, 727
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	456, 776
BstDEI	CTNAG	3 cut(s)	425, 796, 812
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	553, 871
BstKTI	GATC	5 cut(s)	495, 587, 694, 699, 739
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	492, 584, 691, 696, 736
BstMCI	CGRYCG	2 cut(s)	67, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 505, 560
BstNI	CCWGG	2 cut(s)	720, 862
BstSCI	CCNGG	2 cut(s)	718, 860
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	3 cut(s)	584, 691, 736
BstYI	RGATCY	3 cut(s)	584, 691, 736
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	7 cut(s)	66, 83, 92, 165, 480, 508, 563
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	553, 871
BtsIMutI	CAGTG	2 cut(s)	422, 732
Cac8I	GCNNGC	2 cut(s)	456, 776
Cfr13I	GGNCC	3 cut(s)	82, 90, 479
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	4, 723, 800
CviAII	CATG	3 cut(s)	46, 136, 203
CviQI	GTAC	3 cut(s)	4, 723, 800
DdeI	CTNAG	3 cut(s)	425, 796, 812
DpnI	GATC	5 cut(s)	494, 586, 693, 698, 738
DpnII	GATC	5 cut(s)	492, 584, 691, 696, 736
EaeI	YGGCCR	2 cut(s)	64, 561
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	135, 881
Eco52I	CGGCCG	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	90, 479
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	718, 860
EcoT14I	CCWWGG	2 cut(s)	135, 881
EcoT22I	ATGCAT	1 cut(s)	379
ErhI	CCWWGG	2 cut(s)	135, 881
FaeI	CATG	3 cut(s)	49, 139, 206
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FatI	CATG	3 cut(s)	45, 135, 202
FauNDI	CATATG	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	2 cut(s)	560, 878
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	2 cut(s)	213, 576
GluI	GCNGC	1 cut(s)	452
HaeIII	GGCC	7 cut(s)	66, 83, 92, 165, 480, 508, 563
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	49, 139, 206
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	2 cut(s)	323, 385
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	530, 730
Hpy188I	TCNGA	4 cut(s)	27, 341, 696, 756
Hpy188III	TCNNGA	4 cut(s)	153, 767, 811, 872
Hpy8I	GTNNAC	2 cut(s)	530, 730
HpyAV	CCTTC	4 cut(s)	116, 374, 682, 764
HpyCH4III	ACNGT	4 cut(s)	183, 283, 602, 727
HpyCH4V	TGCA	8 cut(s)	256, 377, 409, 554, 641, 705, 715, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 505, 560
HpyF3I	CTNAG	3 cut(s)	425, 796, 812
Hsp92II	CATG	3 cut(s)	49, 139, 206
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	492, 584, 691, 696, 736
LmnI	GCTCC	2 cut(s)	146, 813
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	2 cut(s)	213, 576
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	5 cut(s)	494, 586, 693, 698, 738
MboI	GATC	5 cut(s)	492, 584, 691, 696, 736
MboII	GAAGA	2 cut(s)	93, 236
MfeI	CAATTG	1 cut(s)	650
MflI	RGATCY	3 cut(s)	584, 691, 736
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	8 cut(s)	8, 159, 170, 263, 290, 650, 674, 876
MluNI	TGGCCA	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	6 cut(s)	103, 115, 149, 457, 519, 678
Mox20I	TGGCCA	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	5 cut(s)	77, 177, 359, 468, 645
MslI	CAYNNNNRTG	2 cut(s)	50, 488
Msp20I	TGGCCA	1 cut(s)	563
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	720, 862
MunI	CAATTG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	720, 862
MwoI	GCNNNNNNNGC	3 cut(s)	89, 505, 560
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	501
NdeII	GATC	5 cut(s)	492, 584, 691, 696, 736
NlaIII	CATG	3 cut(s)	49, 139, 206
NlaIV	GGNNCC	3 cut(s)	481, 586, 693
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	298
NsiI	ATGCAT	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	632
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	2 cut(s)	323, 385
PkrI	GCNGC	1 cut(s)	453
Ple19I	CGATCG	1 cut(s)	699
PshBI	ATTAAT	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	718, 860
PspGI	CCWGG	2 cut(s)	718, 860
PspN4I	GGNNCC	3 cut(s)	481, 586, 693
PspPI	GGNCC	3 cut(s)	82, 90, 479
PsuI	RGATCY	3 cut(s)	584, 691, 736
PvuI	CGATCG	1 cut(s)	699
RsaI	GTAC	3 cut(s)	5, 724, 801
RsaNI	GTAC	3 cut(s)	4, 723, 800
RseI	CAYNNNNRTG	2 cut(s)	50, 488
SaqAI	TTAA	5 cut(s)	77, 177, 359, 468, 645
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	5 cut(s)	492, 584, 691, 696, 736
Sau96I	GGNCC	3 cut(s)	82, 90, 479
ScrFI	CCNGG	2 cut(s)	720, 862
SfaNI	GCATC	1 cut(s)	386
SfcI	CTRYAG	1 cut(s)	474
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	632
SmiMI	CAYNNNNRTG	2 cut(s)	50, 488
Sse9I	AATT	8 cut(s)	8, 159, 170, 263, 290, 650, 674, 876
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	2 cut(s)	213, 576
StyD4I	CCNGG	2 cut(s)	718, 860
StyI	CCWWGG	2 cut(s)	135, 881
TaaI	ACNGT	4 cut(s)	183, 283, 602, 727
TaqI	TCGA	2 cut(s)	625, 632
TasI	AATT	8 cut(s)	8, 159, 170, 263, 290, 650, 674, 876
TatI	WGTACW	2 cut(s)	3, 799
TfiI	GAWTC	2 cut(s)	323, 385
Tru1I	TTAA	5 cut(s)	77, 177, 359, 468, 645
Tru9I	TTAA	5 cut(s)	77, 177, 359, 468, 645
TscAI	CASTG	2 cut(s)	429, 732
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	34, 321
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	2 cut(s)	429, 732
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	3 cut(s)	170, 263, 876
XspI	CTAG	2 cut(s)	213, 576
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.