Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Forward (+)

13547357 .. 13550685

Gene Structure 3329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG132900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACAAATTGACGCATTTGTTTCTGAACCAACAATGCTCATTCATGGCGATGAGACATCTCGGCCGGAATGGATTAATGGCCCAAAGGGCCTCACTTTCTTCCTCTGCGGTCAAATGGGAAGGTGGGGTTTCCATGGTTCAGGGAGCTTCCAGAGGAATTGGCCTTGAATTCGTTAAACAGTTGTTGGAGAAGGAAAAAGGTCATGTTATTGCTAGTTGCCGTAATCCTAATGGGGCAACAGGTCTTCTCCATCTGCAAAGTAAATTCGCTGAACGCCTTACTGTTCTACAATTAGATGTGACGAATGAAAGCACCATACAGGAATCTGCCAAGTCTATCAGAGAAAGATATGGCTCGTTAAACCTTCTCATCAATGCATCTGGGATTCTTTCAATACCTAATGTATTGCAACCAGAAACCACACTGAGCAAAGTAGAGAAGTCATCTTTGCTGCTTGCTTATGAGGTTAATGCTGTAGGCCCCATTTTAGTGATCAAGCATATGTGGCCTCTCCTAAAGGTCGGTGGTGGACTGGGAACTGAAAGGGATGTTGCAGTTGTGGCCAATGTGAGTGCTAGAGTTGGATCCATAGGGGATAACCGTCTTGGCGGTTGGCATTCTTATCGAGCTTCGAAAACTGCACTTAATCAATTGACAAAGAATATATCAGTTGAATTGGCACGGAGGAAGGATCCGATCGTTTGCATTTTATTGCACCCAGGTACAGTGGACACAGATCTCTCCAAGCCATTTCAGAAAAATGTTCCAGAAGGCAAGCTTTTCACAGCAGAGTTCTCAGTACAGAAGCTCCTGAGCATTATCCACAATGCAAAAAGGAATGATAATGGAAAGTTCTTTGCCTGGGATGGTCAGGAAATTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

296

Amino Acids

32.48

Weight (kDa)

9.66

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	46 - 254	6.9e-28	short chain dehydrogenase
adh_short_C2	PF13561	49 - 254	1e-18	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 612
AclWI	GGATC	4 cut(s)	582, 595, 689, 702
AcoI	YGGCCR	2 cut(s)	64, 564
AcsI	RAATTY	3 cut(s)	170, 266, 879
AfaI	GTAC	3 cut(s)	5, 727, 804
AgsI	TTSAA	3 cut(s)	170, 396, 677
AjnI	CCWGG	2 cut(s)	721, 863
AluBI	AGCT	4 cut(s)	149, 632, 781, 811
AluI	AGCT	4 cut(s)	149, 632, 781, 811
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	4 cut(s)	582, 595, 689, 702
AoxI	GGCC	7 cut(s)	64, 81, 90, 163, 481, 509, 564
ApeKI	GCWGC	1 cut(s)	454
ApoI	RAATTY	3 cut(s)	170, 266, 879
AseI	ATTAAT	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	82, 90, 482
AsuII	TTCGAA	1 cut(s)	635
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	2 cut(s)	587, 694
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	2 cut(s)	261, 863
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	2 cut(s)	723, 865
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	216, 579
BfmI	CTRYAG	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	739
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	2 cut(s)	723, 865
BmgT120I	GGNCC	3 cut(s)	82, 90, 482
BmiI	GGNNCC	3 cut(s)	484, 589, 696
BmrFI	CCNGG	2 cut(s)	723, 865
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	815
Bpu14I	TTCGAA	1 cut(s)	635
BsaJI	CCNNGG	4 cut(s)	135, 721, 864, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	795, 825
Bse1I	ACTGG	1 cut(s)	540
BseBI	CCWGG	2 cut(s)	723, 865
BseDI	CCNNGG	4 cut(s)	135, 721, 864, 884
BseGI	GGATG	2 cut(s)	556, 874
BseMII	CTCAG	3 cut(s)	419, 806, 813
BseNI	ACTGG	1 cut(s)	540
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	441
BsgI	GTGCAG	1 cut(s)	627
Bsh1285I	CGRYCG	2 cut(s)	67, 702
BshFI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
BsiEI	CGRYCG	2 cut(s)	67, 702
BsiSI	CCGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	495, 587, 694, 699, 739
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	2 cut(s)	110, 612
BspANI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
BspCNI	CTCAG	3 cut(s)	420, 807, 812
BspLI	GGNNCC	3 cut(s)	484, 589, 696
BspPI	GGATC	4 cut(s)	582, 595, 689, 702
BspT104I	TTCGAA	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	540
BssECI	CCNNGG	4 cut(s)	135, 721, 864, 884
BssMI	GATC	5 cut(s)	495, 587, 694, 699, 739
BssT1I	CCWWGG	2 cut(s)	135, 884
Bst2UI	CCWGG	2 cut(s)	723, 865
Bst4CI	ACNGT	4 cut(s)	183, 286, 605, 730
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	459, 779
BstDEI	CTNAG	3 cut(s)	428, 799, 815
BstDSI	CCRYGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	556, 874
BstKTI	GATC	5 cut(s)	498, 590, 697, 702, 742
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	495, 587, 694, 699, 739
BstMCI	CGRYCG	2 cut(s)	67, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 508, 563
BstNI	CCWGG	2 cut(s)	723, 865
BstSCI	CCNGG	2 cut(s)	721, 863
BstSFI	CTRYAG	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	3 cut(s)	587, 694, 739
BstYI	RGATCY	3 cut(s)	587, 694, 739
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	556, 874
BtsIMutI	CAGTG	2 cut(s)	425, 735
Cac8I	GCNNGC	2 cut(s)	459, 779
Cfr13I	GGNCC	3 cut(s)	82, 90, 482
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	4, 726, 803
CviAII	CATG	3 cut(s)	46, 136, 206
CviQI	GTAC	3 cut(s)	4, 726, 803
DdeI	CTNAG	3 cut(s)	428, 799, 815
DpnI	GATC	5 cut(s)	497, 589, 696, 701, 741
DpnII	GATC	5 cut(s)	495, 587, 694, 699, 739
EaeI	YGGCCR	2 cut(s)	64, 564
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	2 cut(s)	135, 884
Eco52I	CGGCCG	1 cut(s)	64
EcoO109I	RGGNCCY	2 cut(s)	90, 482
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	721, 863
EcoT14I	CCWWGG	2 cut(s)	135, 884
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	135, 884
FaeI	CATG	3 cut(s)	49, 139, 209
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	3 cut(s)	45, 135, 205
FauNDI	CATATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	1 cut(s)	455
FokI	GGATG	2 cut(s)	563, 881
Fsp4HI	GCNGC	1 cut(s)	455
FspBI	CTAG	2 cut(s)	216, 579
GluI	GCNGC	1 cut(s)	455
HaeIII	GGCC	7 cut(s)	66, 83, 92, 165, 483, 511, 566
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	49, 139, 209
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	2 cut(s)	326, 388
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	533, 733
Hpy188I	TCNGA	4 cut(s)	27, 344, 699, 759
Hpy188III	TCNNGA	4 cut(s)	153, 770, 814, 875
Hpy8I	GTNNAC	2 cut(s)	533, 733
HpyAV	CCTTC	5 cut(s)	116, 187, 377, 685, 767
HpyCH4III	ACNGT	4 cut(s)	183, 286, 605, 730
HpyCH4V	TGCA	8 cut(s)	259, 380, 412, 557, 644, 708, 718, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 508, 563
HpyF3I	CTNAG	3 cut(s)	428, 799, 815
Hsp92II	CATG	3 cut(s)	49, 139, 209
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	5 cut(s)	495, 587, 694, 699, 739
LmnI	GCTCC	2 cut(s)	146, 816
Lsp1109I	GCAGC	1 cut(s)	441
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	216, 579
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	5 cut(s)	497, 589, 696, 701, 741
MboI	GATC	5 cut(s)	495, 587, 694, 699, 739
MboII	GAAGA	2 cut(s)	93, 239
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	3 cut(s)	587, 694, 739
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	8 cut(s)	8, 159, 170, 266, 293, 653, 677, 879
MluNI	TGGCCA	1 cut(s)	566
MmeI	TCCRAC	2 cut(s)	168, 565
MnlI	CCTC	6 cut(s)	103, 115, 149, 460, 522, 681
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	5 cut(s)	77, 177, 362, 471, 648
MslI	CAYNNNNRTG	2 cut(s)	50, 491
Msp20I	TGGCCA	1 cut(s)	566
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	723, 865
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	2 cut(s)	723, 865
MwoI	GCNNNNNNNGC	3 cut(s)	89, 508, 563
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	5 cut(s)	495, 587, 694, 699, 739
NlaIII	CATG	3 cut(s)	49, 139, 209
NlaIV	GGNNCC	3 cut(s)	484, 589, 696
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	635
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	326, 388
PkrI	GCNGC	1 cut(s)	456
Ple19I	CGATCG	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	77
Psp6I	CCWGG	2 cut(s)	721, 863
PspGI	CCWGG	2 cut(s)	721, 863
PspN4I	GGNNCC	3 cut(s)	484, 589, 696
PspPI	GGNCC	3 cut(s)	82, 90, 482
PsuI	RGATCY	3 cut(s)	587, 694, 739
PvuI	CGATCG	1 cut(s)	702
RsaI	GTAC	3 cut(s)	5, 727, 804
RsaNI	GTAC	3 cut(s)	4, 726, 803
RseI	CAYNNNNRTG	2 cut(s)	50, 491
SaqAI	TTAA	5 cut(s)	77, 177, 362, 471, 648
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	5 cut(s)	495, 587, 694, 699, 739
Sau96I	GGNCC	3 cut(s)	82, 90, 482
ScrFI	CCNGG	2 cut(s)	723, 865
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	1 cut(s)	477
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	50, 491
Sse9I	AATT	8 cut(s)	8, 159, 170, 266, 293, 653, 677, 879
SsiI	CCGC	2 cut(s)	110, 612
SspMI	CTAG	2 cut(s)	216, 579
StyD4I	CCNGG	2 cut(s)	721, 863
StyI	CCWWGG	2 cut(s)	135, 884
TaaI	ACNGT	4 cut(s)	183, 286, 605, 730
TaqI	TCGA	2 cut(s)	628, 635
TasI	AATT	8 cut(s)	8, 159, 170, 266, 293, 653, 677, 879
TatI	WGTACW	2 cut(s)	3, 802
TfiI	GAWTC	2 cut(s)	326, 388
Tru1I	TTAA	5 cut(s)	77, 177, 362, 471, 648
Tru9I	TTAA	5 cut(s)	77, 177, 362, 471, 648
TscAI	CASTG	2 cut(s)	432, 735
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	34, 324
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	2 cut(s)	432, 735
VspI	ATTAAT	1 cut(s)	77
XapI	RAATTY	3 cut(s)	170, 266, 879
XspI	CTAG	2 cut(s)	216, 579
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.