Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007841

Physical Location & Seq

Genomic Coordinates Forward (+)

12763642 .. 12766840

Gene Structure 3199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTACCAACAATGCTCATTCATGGCGATGAGACATCTCGGCCGGAATGGATTAATGGCCCAAAGGGCCTCACTTTCTTCCTCTGCGGTCAAATGGGAAGGTGGGGTTTCCATGGTTCAGGGAGCATCCAGAGGAATTGGCCTTGAATTCGTTAAACAGTTGTTGGAGAAGGAAAAAGGTCATGTTATTGCTAGTTGCCGTAATCCTAATGGAGCAACAGGTCTTCTCCATCTGCAAAGTAAATTCGCTGAACGCCTTACTGTTCTACAATTAGATGTGACGAATGAAAGCACCATACAGGAATCTGCAAAGTCTATCAGAGAAAGATATGGCTCGTTAAACCTTCTCATCAATGCATCTGGGATTCTTTCAATACCTAATGTATTGCAACCAGAAACCACACTGAGCAAAGTAGAGAAGTCATCTTTGCTGCTTGCTTATGAGGTTAATGCTGTAGGCCCCATTTTAGCGATCAAGCATATGTGGCCTCTCCTAAAGGTCGGTGGTGGACTGGGAACTGAAAGGGATGTTGCAGTTGTGGCCAATGTGAGTGCTAGAGTTGGATCCATAGGGGATAACCGTCTTGGCGGTTGGCATTCTTATCGAGCTTCGAAAACTGCACTTAATCAATTGACAAAGAATATATCAGTTGAATTGGCACGGAGGAAGGATCCAATCGTGTGCATTTTATTGCACCCAGGTACAGTGGACACAGATCTCTCCAAGCCATTTCAGAAAAATGTTCCAGAAGGCAAGCTTTTCACAACAGAGTTCTCAGTACAGAAGCTCCTGAGCATCATCCACAATGCAAAAAGGAATGATAATGGAAAGTTCTTTGCCTGGGATGGTCAGGAAATTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010033 GO:0016491 GO:0042221 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0097237 GO:0098754 GO:0110095 GO:0110096 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

288

Amino Acids

31.51

Weight (kDa)

9.6

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KR	PF08659	35 - 124	1e-05	KR domain
adh_short	PF00106	38 - 246	1e-27	short chain dehydrogenase
adh_short_C2	PF13561	41 - 246	2.3e-18	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20760 AT4G20760
fragaria_vesca	FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150 FvH4_3g11150
malus_domestica	MD10G1243100.v1.1
prunus_persica	Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1 Prupe.4G101000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018051
rosa_laevigata	RLG00000032336
rosa_multiflora	Rmu_co8056702.1_g000001 Rmu_sc0010280.1_g000016
rosa_roxburghii	Rroxscaffold_1G00059570
rosa_rugosa	Rorug05G0040100
rosa_samantha	Rh5AG132900 Rh5BG131400 Rh5CG143400 Rh5DG133100
rosa_wichuraiana	Rw5G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	86, 588
AclWI	GGATC	4 cut(s)	558, 571, 665, 678
AcoI	YGGCCR	2 cut(s)	40, 540
AcsI	RAATTY	3 cut(s)	146, 242, 855
AfaI	GTAC	3 cut(s)	5, 703, 780
AgsI	TTSAA	3 cut(s)	146, 372, 653
AjnI	CCWGG	2 cut(s)	697, 839
AluBI	AGCT	3 cut(s)	608, 757, 787
AluI	AGCT	3 cut(s)	608, 757, 787
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	4 cut(s)	558, 571, 665, 678
AoxI	GGCC	7 cut(s)	40, 57, 66, 139, 457, 485, 540
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	3 cut(s)	146, 242, 855
AseI	ATTAAT	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	58, 66, 458
AsuII	TTCGAA	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	542
BamHI	GGATCC	2 cut(s)	563, 670
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	417
BccI	CCATC	2 cut(s)	237, 839
BceAI	ACGGC	1 cut(s)	183
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	2 cut(s)	699, 841
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	192, 555
BfmI	CTRYAG	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	65
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	699, 841
BmgT120I	GGNCC	3 cut(s)	58, 66, 458
BmiI	GGNNCC	3 cut(s)	460, 565, 672
BmrFI	CCNGG	2 cut(s)	699, 841
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	3 cut(s)	134, 365, 804
BmuI	ACTGGG	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	791
Bpu14I	TTCGAA	1 cut(s)	611
BsaJI	CCNNGG	4 cut(s)	111, 697, 840, 860
BsaXI	ACNNNNNCTCC	2 cut(s)	771, 801
Bse1I	ACTGG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	699, 841
BseDI	CCNNGG	4 cut(s)	111, 697, 840, 860
BseGI	GGATG	4 cut(s)	125, 532, 798, 850
BseMII	CTCAG	3 cut(s)	395, 782, 789
BseNI	ACTGG	1 cut(s)	516
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	7 cut(s)	42, 59, 68, 141, 459, 487, 542
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	7 cut(s)	42, 59, 68, 141, 459, 487, 542
Bsp119I	TTCGAA	1 cut(s)	611
Bsp143I	GATC	4 cut(s)	471, 563, 670, 715
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	2 cut(s)	86, 588
BspANI	GGCC	7 cut(s)	42, 59, 68, 141, 459, 487, 542
BspCNI	CTCAG	3 cut(s)	396, 783, 788
BspLI	GGNNCC	3 cut(s)	460, 565, 672
BspPI	GGATC	4 cut(s)	558, 571, 665, 678
BspT104I	TTCGAA	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	4 cut(s)	111, 697, 840, 860
BssMI	GATC	4 cut(s)	471, 563, 670, 715
BssT1I	CCWWGG	2 cut(s)	111, 860
Bst2UI	CCWGG	2 cut(s)	699, 841
Bst4CI	ACNGT	4 cut(s)	159, 262, 581, 706
BstBI	TTCGAA	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	435, 755
BstDEI	CTNAG	3 cut(s)	404, 775, 791
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	125, 532, 798, 850
BstKTI	GATC	4 cut(s)	474, 566, 673, 718
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	471, 563, 670, 715
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 484, 539
BstNI	CCWGG	2 cut(s)	699, 841
BstSCI	CCNGG	2 cut(s)	697, 839
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	3 cut(s)	563, 670, 715
BstYI	RGATCY	3 cut(s)	563, 670, 715
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	7 cut(s)	42, 59, 68, 141, 459, 487, 542
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	125, 532, 798, 850
BtsIMutI	CAGTG	2 cut(s)	401, 711
Cac8I	GCNNGC	2 cut(s)	435, 755
Cfr13I	GGNCC	3 cut(s)	58, 66, 458
Csp6I	GTAC	3 cut(s)	4, 702, 779
CviAII	CATG	3 cut(s)	22, 112, 182
CviQI	GTAC	3 cut(s)	4, 702, 779
DdeI	CTNAG	3 cut(s)	404, 775, 791
DpnI	GATC	4 cut(s)	473, 565, 672, 717
DpnII	GATC	4 cut(s)	471, 563, 670, 715
EaeI	YGGCCR	2 cut(s)	40, 540
EagI	CGGCCG	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	111, 860
Eco52I	CGGCCG	1 cut(s)	40
EcoO109I	RGGNCCY	2 cut(s)	66, 458
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	697, 839
EcoT14I	CCWWGG	2 cut(s)	111, 860
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	111, 860
FaeI	CATG	3 cut(s)	25, 115, 185
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FatI	CATG	3 cut(s)	21, 111, 181
FauNDI	CATATG	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	4 cut(s)	112, 539, 785, 857
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	2 cut(s)	192, 555
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	7 cut(s)	42, 59, 68, 141, 459, 487, 542
HapII	CCGG	1 cut(s)	43
Hin1II	CATG	3 cut(s)	25, 115, 185
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	2 cut(s)	302, 364
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	509, 709
Hpy188I	TCNGA	2 cut(s)	320, 735
Hpy188III	TCNNGA	4 cut(s)	129, 746, 790, 851
Hpy8I	GTNNAC	2 cut(s)	509, 709
HpyAV	CCTTC	5 cut(s)	92, 163, 353, 661, 743
HpyCH4III	ACNGT	4 cut(s)	159, 262, 581, 706
HpyCH4V	TGCA	9 cut(s)	235, 308, 356, 388, 533, 620, 684, 694, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 484, 539
HpyF3I	CTNAG	3 cut(s)	404, 775, 791
Hsp92II	CATG	3 cut(s)	25, 115, 185
Kzo9I	GATC	4 cut(s)	471, 563, 670, 715
LmnI	GCTCC	3 cut(s)	122, 212, 792
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	3 cut(s)	134, 365, 804
MaeI	CTAG	2 cut(s)	192, 555
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	473, 565, 672, 717
MboI	GATC	4 cut(s)	471, 563, 670, 715
MboII	GAAGA	2 cut(s)	69, 215
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	3 cut(s)	563, 670, 715
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	7 cut(s)	135, 146, 242, 269, 629, 653, 855
MluNI	TGGCCA	1 cut(s)	542
MmeI	TCCRAC	2 cut(s)	144, 541
MnlI	CCTC	6 cut(s)	79, 91, 125, 436, 498, 657
Mox20I	TGGCCA	1 cut(s)	542
Mph1103I	ATGCAT	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	5 cut(s)	53, 153, 338, 447, 624
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	699, 841
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	2 cut(s)	699, 841
MwoI	GCNNNNNNNGC	3 cut(s)	65, 484, 539
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	4 cut(s)	471, 563, 670, 715
NlaIII	CATG	3 cut(s)	25, 115, 185
NlaIV	GGNNCC	3 cut(s)	460, 565, 672
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	611
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	2 cut(s)	302, 364
PkrI	GCNGC	1 cut(s)	432
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	697, 839
PspGI	CCWGG	2 cut(s)	697, 839
PspN4I	GGNNCC	3 cut(s)	460, 565, 672
PspPI	GGNCC	3 cut(s)	58, 66, 458
PsuI	RGATCY	3 cut(s)	563, 670, 715
RsaI	GTAC	3 cut(s)	5, 703, 780
RsaNI	GTAC	3 cut(s)	4, 702, 779
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	5 cut(s)	53, 153, 338, 447, 624
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	4 cut(s)	471, 563, 670, 715
Sau96I	GGNCC	3 cut(s)	58, 66, 458
ScrFI	CCNGG	2 cut(s)	699, 841
SfaNI	GCATC	3 cut(s)	134, 365, 804
SfcI	CTRYAG	1 cut(s)	453
SfiI	GGCCNNNNNGGCC	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	7 cut(s)	135, 146, 242, 269, 629, 653, 855
SsiI	CCGC	2 cut(s)	86, 588
SspMI	CTAG	2 cut(s)	192, 555
StyD4I	CCNGG	2 cut(s)	697, 839
StyI	CCWWGG	2 cut(s)	111, 860
TaaI	ACNGT	4 cut(s)	159, 262, 581, 706
TaqI	TCGA	2 cut(s)	604, 611
TasI	AATT	7 cut(s)	135, 146, 242, 269, 629, 653, 855
TatI	WGTACW	1 cut(s)	778
TfiI	GAWTC	2 cut(s)	302, 364
Tru1I	TTAA	5 cut(s)	53, 153, 338, 447, 624
Tru9I	TTAA	5 cut(s)	53, 153, 338, 447, 624
TscAI	CASTG	2 cut(s)	408, 711
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	10, 300
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	2 cut(s)	408, 711
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	3 cut(s)	146, 242, 855
XspI	CTAG	2 cut(s)	192, 555
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.