Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004719

Physical Location & Seq

Genomic Coordinates Reverse (-)

11198251 .. 11201106

Gene Structure 2856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCGATTCGCAGAGCGCAAACTCTACTTTGTCTTTCTAAATTCAAAACCAATTTCGTGTCTGGGTCGCTCCACCGGTTCTCTTCTTCGTCTCAAAATTCAAATCAATTCCAGAATGTTGGTTTCATAGGACTTGGAAATATGGGATTCAGAATGGTGAATAATCTAATTAGAGCTGGATATAAAGTTACCGTTCATGACATAAACCGTGATGTTATGAAAATGTTCACTGAAATGGGAGTCTCTTCTAGAGAAACTCCTTATGAAGTTGCACAAGATAGCGAAGTTGTGATTACAATGTTGCCTTCATCATCTCATGTGATGGATGTGTACACAGGAACAAATGGGTTGCTTCTTGGAGAAAATGATATAAGACCTGCTTTGTTTATAGATTCATCCACTATTGATCCACAAACAACTCGAAAAATCTCACTTGCTGTTTCTAATTGTAATTTGAAAGAAAAGAGAGATAATTGGGAAAAGCCAGTCATGTTGGATGCTCCCGTCTCTGGAGGTGTTCTTGCTGCAGAAGCTGGTACACTTACTTTCATGGTTGGAGGTCCCGAAGATGCTTACTTAGCCGCTAGACCAATACTTCAGTCAATGGGCAGAACCTCCATCTACTGTGGTGGTTCAGGAAATGGATCTGCCGCAAAGATTTGTAACAATCTGGCAATGGCCGTGAGTATGCTCGGCACTTCAGAAGCCTTAGCTCTTGGTCAGTCACTTGGAATATCTGCCAGTACTTTAACAGAAGTCTTAAACACATCTAGTGGCCGTTGTTGGAGCAGTGACGCATACAATCCAGTTCCAGGAGTGATGAAAGGTGTGCCATCTTCAAGGGATTACAATGGCGGTTTCGCCTCCAAACTTATGGCTAAAGACCTAAACCTCGCAGCAGCCTCAGCTGAAGAAGTTGGACACAAAAGCCCATTGATATCCAAAGCACAAGAAATTTACAAGAAGATGTGCGAGGAAGGACATGAAACGAAGGACTTCTCTTGTGTTTTCAGACACTTTTACAATGGGAAAGATGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006551 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008442 GO:0009081 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019752 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

347

Amino Acids

37.36

Weight (kDa)

7.0

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	4 - 138	2e-25	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	141 - 266	2.4e-28	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20930 AT4G20930
fragaria_vesca	FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220
malus_domestica	MD05G1271700.v1.1
prunus_persica	Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1
pyrus_communis	pycom05g25400
rosa_chinensis	RchiOBHm_Chr5g0016441
rosa_laevigata	RLG00000032250
rosa_multiflora	Rmu_sc0030879.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060460
rosa_rugosa	Rorug05G0032300 Rorug05G0032400
rosa_samantha	Rh5AG125900 Rh5BG124900 Rh5CG137200 Rh5DG124600
rosa_wichuraiana	Rw5G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AciI	CCGC	3 cut(s)	582, 651, 855
AclWI	GGATC	2 cut(s)	401, 652
AcoI	YGGCCR	2 cut(s)	678, 775
AcsI	RAATTY	3 cut(s)	41, 97, 954
AcuI	CTGAAG	3 cut(s)	581, 684, 930
AfaI	GTAC	3 cut(s)	332, 538, 745
AfiI	CCNNNNNNNGG	2 cut(s)	509, 812
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	46, 102, 457, 840
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	4 cut(s)	176, 533, 713, 908
AluI	AGCT	4 cut(s)	176, 533, 713, 908
Alw26I	GTCTC	3 cut(s)	96, 247, 511
AlwI	GGATC	2 cut(s)	401, 652
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	678, 775
ApeKI	GCWGC	3 cut(s)	524, 896, 899
ApoI	RAATTY	3 cut(s)	41, 97, 954
AsiGI	ACCGGT	1 cut(s)	75
Asp700I	GAANNNNTTC	2 cut(s)	224, 995
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	560
BbvCI	CCTCAGC	1 cut(s)	904
BbvI	GCAGC	3 cut(s)	511, 908, 911
BccI	CCATC	3 cut(s)	316, 626, 841
BceAI	ACGGC	2 cut(s)	665, 762
BciT130I	CCWGG	1 cut(s)	813
BcoDI	GTCTC	3 cut(s)	96, 247, 511
BfaI	CTAG	3 cut(s)	249, 585, 771
BfmI	CTRYAG	1 cut(s)	525
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	5 cut(s)	525, 582, 651, 897, 900
BlsI	GCNGC	5 cut(s)	526, 583, 652, 898, 901
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	1 cut(s)	813
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	2 cut(s)	487, 559
BpmI	CTGGAG	1 cut(s)	531
Bpu10I	CCTNAGC	2 cut(s)	709, 904
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 812
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	3 cut(s)	485, 741, 806
Bse3DI	GCAATG	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	813
BseGI	GGATG	3 cut(s)	331, 395, 502
BseLI	CCNNNNNNNGG	2 cut(s)	509, 812
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	3 cut(s)	485, 741, 806
BseXI	GCAGC	3 cut(s)	511, 908, 911
BshFI	GGCC	2 cut(s)	680, 777
BshTI	ACCGGT	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	509, 812
BsmAI	GTCTC	3 cut(s)	96, 247, 511
BsmBI	CGTCTC	2 cut(s)	96, 511
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	680, 777
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	406, 644
BspACI	CCGC	3 cut(s)	582, 651, 855
BspANI	GGCC	2 cut(s)	680, 777
BspCNI	CTCAG	1 cut(s)	917
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	529
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	401, 652
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	485, 741, 806
BssAI	RCCGGY	1 cut(s)	75
BssMI	GATC	2 cut(s)	406, 644
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	3 cut(s)	193, 209, 626
Bst6I	CTCTTC	2 cut(s)	88, 250
BstAUI	TGTACA	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	577, 709, 904
BstF5I	GGATG	3 cut(s)	331, 395, 502
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	409, 647
BstMAI	GTCTC	3 cut(s)	96, 247, 511
BstMBI	GATC	2 cut(s)	406, 644
BstMWI	GCNNNNNNNGC	3 cut(s)	530, 578, 905
BstNI	CCWGG	1 cut(s)	813
BstSCI	CCNGG	1 cut(s)	811
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	511, 908, 911
BstX2I	RGATCY	1 cut(s)	644
BstXI	CCANNNNNNTGG	2 cut(s)	119, 874
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	680, 777
BtsCI	GGATG	3 cut(s)	331, 395, 502
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	2 cut(s)	228, 796
BveI	ACCTGC	1 cut(s)	385
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	331, 537, 744
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	5 cut(s)	197, 317, 490, 550, 983
CviQI	GTAC	3 cut(s)	331, 537, 744
DdeI	CTNAG	3 cut(s)	577, 709, 904
DpnI	GATC	2 cut(s)	408, 646
DpnII	GATC	2 cut(s)	406, 644
EaeI	YGGCCR	2 cut(s)	678, 775
Eam1104I	CTCTTC	2 cut(s)	88, 250
EarI	CTCTTC	2 cut(s)	88, 250
Eco32I	GATATC	1 cut(s)	939
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	3 cut(s)	581, 684, 930
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	939
Esp3I	CGTCTC	2 cut(s)	96, 511
FaeI	CATG	5 cut(s)	200, 320, 493, 553, 986
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	5 cut(s)	196, 316, 489, 549, 982
Fnu4HI	GCNGC	5 cut(s)	525, 582, 651, 897, 900
FokI	GGATG	3 cut(s)	338, 382, 509
Fsp4HI	GCNGC	5 cut(s)	525, 582, 651, 897, 900
FspBI	CTAG	3 cut(s)	249, 585, 771
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	5 cut(s)	525, 582, 651, 897, 900
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	2 cut(s)	680, 777
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	5 cut(s)	200, 320, 493, 553, 986
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	4 cut(s)	7, 147, 240, 392
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	228, 331, 333, 539
Hpy188I	TCNGA	4 cut(s)	152, 703, 1013, 1043
Hpy188III	TCNNGA	6 cut(s)	112, 197, 249, 510, 563, 636
Hpy8I	GTNNAC	4 cut(s)	228, 331, 333, 539
HpyAV	CCTTC	3 cut(s)	315, 971, 985
HpyCH4III	ACNGT	3 cut(s)	193, 209, 626
HpyCH4V	TGCA	2 cut(s)	272, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	530, 578, 905
HpyF3I	CTNAG	3 cut(s)	577, 709, 904
Hsp92II	CATG	5 cut(s)	200, 320, 493, 553, 986
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	406, 644
LmnI	GCTCC	3 cut(s)	75, 505, 786
Lsp1109I	GCAGC	3 cut(s)	511, 908, 911
LweI	GCATC	2 cut(s)	487, 559
MaeI	CTAG	3 cut(s)	249, 585, 771
MaeIII	GTNAC	4 cut(s)	187, 662, 723, 791
MalI	GATC	2 cut(s)	408, 646
MboI	GATC	2 cut(s)	406, 644
MboII	GAAGA	7 cut(s)	75, 78, 237, 578, 828, 923, 976
MflI	RGATCY	1 cut(s)	644
MluCI	AATT	9 cut(s)	41, 52, 97, 107, 168, 445, 451, 472, 954
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	4 cut(s)	474, 535, 764, 898
MnlI	CCTC	8 cut(s)	506, 551, 625, 874, 902, 913, 967, 1030
MroXI	GAANNNNTTC	2 cut(s)	224, 995
MseI	TTAA	2 cut(s)	749, 761
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	3 cut(s)	530, 578, 905
NdeII	GATC	2 cut(s)	406, 644
NlaIII	CATG	5 cut(s)	200, 320, 493, 553, 986
NlaIV	GGNNCC	1 cut(s)	562
NmeAIII	GCCGAG	1 cut(s)	672
NmuCI	GTSAC	2 cut(s)	723, 791
PagI	TCATGA	1 cut(s)	196
PdmI	GAANNNNTTC	2 cut(s)	224, 995
PfeI	GAWTC	3 cut(s)	7, 147, 392
PfoI	TCCNGGA	1 cut(s)	811
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	526, 583, 652, 898, 901
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	3 cut(s)	332, 538, 745
RsaNI	GTAC	3 cut(s)	331, 537, 744
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	749, 761
SatI	GCNGC	5 cut(s)	525, 582, 651, 897, 900
Sau3AI	GATC	2 cut(s)	406, 644
Sau96I	GGNCC	1 cut(s)	560
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	813
SfaNI	GCATC	2 cut(s)	487, 559
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	9 cut(s)	41, 52, 97, 107, 168, 445, 451, 472, 954
SsiI	CCGC	3 cut(s)	582, 651, 855
SspMI	CTAG	3 cut(s)	249, 585, 771
StyD4I	CCNGG	1 cut(s)	811
TaaI	ACNGT	3 cut(s)	193, 209, 626
TaqI	TCGA	1 cut(s)	421
TasI	AATT	9 cut(s)	41, 52, 97, 107, 168, 445, 451, 472, 954
TatI	WGTACW	2 cut(s)	330, 743
TauI	GCSGC	2 cut(s)	584, 653
TfiI	GAWTC	3 cut(s)	7, 147, 392
Tru1I	TTAA	2 cut(s)	749, 761
Tru9I	TTAA	2 cut(s)	749, 761
TscAI	CASTG	2 cut(s)	235, 796
TseFI	GTSAC	2 cut(s)	723, 791
TseI	GCWGC	3 cut(s)	524, 896, 899
Tsp45I	GTSAC	2 cut(s)	723, 791
TspDTI	ATGAA	9 cut(s)	115, 185, 233, 279, 297, 384, 538, 836, 999
TspRI	CASTG	2 cut(s)	235, 796
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	3 cut(s)	41, 97, 954
XbaI	TCTAGA	1 cut(s)	248
XmnI	GAANNNNTTC	2 cut(s)	224, 995
XspI	CTAG	3 cut(s)	249, 585, 771
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.