Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004719

Physical Location & Seq

Genomic Coordinates Reverse (-)

26763969 .. 26767490

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAATACAAATACAATGACGTGGACTTTAAGATAAGACAACCAAATGGGAGATTAGAGACAATGATTTCCTGTTTTTCTTCTGTAAATAAGCACTGCCATTATTTGAACTTTGCCTCTAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCAATTTTCTGTAGGGTGAGATCACTGAATCATCTTTCCAAATGCATTTCCTCAATCCACCTACTTTCTCTTCTGTCATCTTCAACACGCAGATTTTATTCAGAACAAGTCTCATCCGGTTTTGAGAGTGTTGGGTTTATAGGGCTGGGAAATATGGGATCAAGAATGGCAAATAATCTAATTAAGGCTGGATACCGAGTCGCTGTTCATGACATAAACAGCAATGCTACGAAGAAGTTCTCTGACATGGGAGCTGCAACGAAAGAAACACCTTTAAAAGTTGCTGAAGCTAGTGATGTTGTAATCACAATGCTGCCTTCCTCATCTCACGTATACGATGTTTATACTGGACCTAATGGTTTACTTTGTGGAGGGGAATTACGACCATGGTTGTTAATAGATTCATCCACTATTGATCCACAAACGTCGAGAAAGCTTTCTGTCGCTGTGTCTGACTGTACTTTAAAGGAGAAAAAAGATTATCCGAAGAAGCCTGACATGTTGGATGCCCCTGTATCTGGAGGTGTTCTTGCTGCAGAAGCGGGGACTCTTACTTTCATGGTGGGTGGCTCTGAGGAATCTTATCTGGCAGCAAAGTCCTTATTCCTTGCGATGGGCAAGAACACGATTTATTGTGGTGGATCAGGAAATGGTTCAGCAGCAAAGATCTGCAATAATTTGGCAATGTCTATTAGTATGATTGGTGTTTCTGAATCCCTTGCTCTTGGCCAGGCTCTGGGACTTTCCGCAAGTACTCTGACAAGGGTACTCAACTCTTCTAGTGGTCGCTGTTGGAGTAGTGATAGTTATAATCCGGTTCCTGGAGTGATGGAAGGAGTGCCCTCTTCAAGGAACTATGATGGCGGGTTCGCATGCAAACTTATGGCTAAGGATCTAAACCTTGGTGCAACATCAGCCGAAGAGGTTGGTGTTAGATGCCCGTTGACGTCCCAAGCACAAAAGATATACACTCAGCTCTGCAAGAATGGTCATGAAACCGAGGACTTCTCCTGTGTTTTCCGGCATTATTACTCCGGCAAGAACGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006551 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008442 GO:0009081 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019752 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

401

Amino Acids

43.28

Weight (kDa)

8.58

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20930 AT4G20930
fragaria_vesca	FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220
malus_domestica	MD05G1271700.v1.1
prunus_persica	Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1
pyrus_communis	pycom05g25400
rosa_chinensis	RchiOBHm_Chr5g0016441
rosa_laevigata	RLG00000032250
rosa_multiflora	Rmu_sc0030879.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060460
rosa_rugosa	Rorug05G0032300 Rorug05G0032400
rosa_samantha	Rh5AG125900 Rh5BG124900 Rh5CG137200 Rh5DG124600
rosa_wichuraiana	Rw5G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AatII	GACGTC	1 cut(s)	1100
AccB7I	CCANNNNNTGG	1 cut(s)	886
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	3 cut(s)	692, 897, 1014
AclWI	GGATC	4 cut(s)	316, 560, 799, 1050
AcoI	YGGCCR	1 cut(s)	877
AcuI	CTGAAG	1 cut(s)	456
AcyI	GRCGYC	1 cut(s)	1097
AfaI	GTAC	3 cut(s)	610, 904, 918
AfiI	CCNNNNNNNGG	5 cut(s)	668, 763, 886, 971, 999
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	3 cut(s)	109, 234, 999
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	2 cut(s)	879, 970
AluBI	AGCT	5 cut(s)	404, 440, 586, 1126, 1200
AluI	AGCT	5 cut(s)	404, 440, 586, 1126, 1200
Alw26I	GTCTC	2 cut(s)	53, 265
AlwI	GGATC	4 cut(s)	316, 560, 799, 1050
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	5 cut(s)	404, 463, 683, 740, 809
Asp700I	GAANNNNTTC	3 cut(s)	386, 586, 802
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	993
BalI	TGGCCA	1 cut(s)	879
BbvI	GCAGC	5 cut(s)	391, 450, 670, 752, 821
BccI	CCATC	3 cut(s)	757, 973, 1004
BciT130I	CCWGG	2 cut(s)	881, 972
BciVI	GTATCC	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	53, 265
BfaI	CTAG	4 cut(s)	120, 441, 930, 1201
BfmI	CTRYAG	2 cut(s)	160, 684
BfuI	GTATCC	1 cut(s)	335
BglII	AGATCT	1 cut(s)	816
BisI	GCNGC	5 cut(s)	405, 464, 684, 741, 810
BlsI	GCNGC	5 cut(s)	406, 465, 685, 742, 811
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	2 cut(s)	881, 972
Bme18I	GGWCC	1 cut(s)	500
BmgBI	CACGTC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	969
BmrFI	CCNGG	2 cut(s)	881, 972
BmsI	GCATC	2 cut(s)	646, 1076
BplI	GAGNNNNNCTC	2 cut(s)	1142, 1174
BpmI	CTGGAG	2 cut(s)	690, 993
Bpu10I	CCTNAGC	1 cut(s)	1038
BsaAI	YACGTR	1 cut(s)	481
BsaHI	GRCGYC	1 cut(s)	1097
BsaJI	CCNNGG	3 cut(s)	536, 1051, 1149
BsaWI	WCCGGW	2 cut(s)	266, 964
Bsc4I	CCNNNNNNNGG	5 cut(s)	668, 763, 886, 971, 999
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	2 cut(s)	379, 840
BseBI	CCWGG	2 cut(s)	881, 972
BseDI	CCNNGG	3 cut(s)	536, 1051, 1149
BseGI	GGATG	3 cut(s)	263, 554, 661
BseLI	CCNNNNNNNGG	5 cut(s)	668, 763, 886, 971, 999
BseMI	GCAATG	2 cut(s)	379, 840
BseMII	CTCAG	2 cut(s)	714, 1136
BseNI	ACTGG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	993
BseXI	GCAGC	5 cut(s)	391, 450, 670, 752, 821
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	879
BsiSI	CCGG	4 cut(s)	267, 965, 1171, 1185
BslFI	GGGAC	3 cut(s)	709, 903, 1084
BslI	CCNNNNNNNGG	5 cut(s)	668, 763, 886, 971, 999
BsmAI	GTCTC	2 cut(s)	53, 265
BsmFI	GGGAC	3 cut(s)	709, 903, 1084
BsnI	GGCC	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	993
Bsp143I	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	3 cut(s)	692, 897, 1014
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	2 cut(s)	715, 1135
BspHI	TCATGA	2 cut(s)	358, 1141
BspLI	GGNNCC	1 cut(s)	969
BspMAI	CTGCAG	1 cut(s)	688
BspPI	GGATC	4 cut(s)	316, 560, 799, 1050
BsrDI	GCAATG	2 cut(s)	379, 840
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	536, 1051, 1149
BssMI	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	1097
BssT1I	CCWWGG	2 cut(s)	536, 1051
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	881, 972
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	4 cut(s)	225, 931, 1000, 1065
BstACI	GRCGYC	1 cut(s)	1097
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	1024
BstDEI	CTNAG	3 cut(s)	723, 1038, 1122
BstDSI	CCRYGG	1 cut(s)	536
BstENI	CCTNNNNNAGG	1 cut(s)	997
BstF5I	GGATG	3 cut(s)	263, 554, 661
BstKTI	GATC	6 cut(s)	173, 311, 568, 794, 819, 1045
BstMAI	GTCTC	2 cut(s)	53, 265
BstMBI	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 1064
BstNI	CCWGG	2 cut(s)	881, 972
BstNSI	RCATGY	2 cut(s)	652, 1026
BstSCI	CCNGG	2 cut(s)	879, 970
BstSFI	CTRYAG	2 cut(s)	160, 684
BstSLI	GKGCMC	1 cut(s)	993
BstV1I	GCAGC	5 cut(s)	391, 450, 670, 752, 821
BstX2I	RGATCY	2 cut(s)	816, 1042
BstYI	RGATCY	2 cut(s)	816, 1042
BstZ17I	GTATAC	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	536
BtgZI	GCGATG	1 cut(s)	776
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	263, 554, 661
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	94, 173
Cac8I	GCNNGC	1 cut(s)	1024
CaiI	CAGNNNCTG	1 cut(s)	886
CciI	TCATGA	2 cut(s)	358, 1141
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	609, 903, 917
CviAII	CATG	8 cut(s)	148, 359, 397, 537, 649, 709, 1023, 1142
CviQI	GTAC	3 cut(s)	609, 903, 917
DdeI	CTNAG	3 cut(s)	723, 1038, 1122
DpnI	GATC	6 cut(s)	172, 310, 567, 793, 818, 1044
DpnII	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
DraI	TTTAAA	2 cut(s)	426, 615
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	4 cut(s)	225, 931, 1000, 1065
EarI	CTCTTC	4 cut(s)	225, 931, 1000, 1065
Eco130I	CCWWGG	2 cut(s)	536, 1051
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	997
EcoRII	CCWGG	2 cut(s)	879, 970
EcoT14I	CCWWGG	2 cut(s)	536, 1051
EcoT22I	ATGCAT	1 cut(s)	197
ErhI	CCWWGG	2 cut(s)	536, 1051
FaeI	CATG	8 cut(s)	151, 362, 400, 540, 652, 712, 1026, 1145
FaqI	GGGAC	3 cut(s)	709, 903, 1084
FatI	CATG	8 cut(s)	147, 358, 396, 536, 648, 708, 1022, 1141
FauI	CCCGC	2 cut(s)	685, 1007
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	405, 464, 684, 741, 810
FokI	GGATG	3 cut(s)	250, 541, 668
Fsp4HI	GCNGC	5 cut(s)	405, 464, 684, 741, 810
FspBI	CTAG	4 cut(s)	120, 441, 930, 1201
GluI	GCNGC	5 cut(s)	405, 464, 684, 741, 810
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	2 cut(s)	690, 993
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	4 cut(s)	267, 965, 1171, 1185
Hin1I	GRCGYC	1 cut(s)	1097
Hin1II	CATG	8 cut(s)	151, 362, 400, 540, 652, 712, 1026, 1145
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	6 cut(s)	178, 348, 551, 697, 728, 863
HpaII	CCGG	4 cut(s)	267, 965, 1171, 1185
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	4 cut(s)	25, 484, 512, 1095
Hpy188I	TCNGA	7 cut(s)	253, 394, 604, 636, 724, 862, 909
Hpy188III	TCNNGA	7 cut(s)	120, 312, 359, 579, 669, 795, 1142
Hpy8I	GTNNAC	4 cut(s)	25, 484, 512, 1095
Hpy99I	CGWCG	1 cut(s)	580
HpyAV	CCTTC	2 cut(s)	477, 977
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	4 cut(s)	21, 480, 575, 1097
HpyCH4V	TGCA	7 cut(s)	195, 407, 686, 822, 1026, 1058, 1131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 1064
HpyF3I	CTNAG	3 cut(s)	723, 1038, 1122
HpySE526I	ACGT	4 cut(s)	21, 480, 575, 1097
Hsp92I	GRCGYC	1 cut(s)	1097
Hsp92II	CATG	8 cut(s)	151, 362, 400, 540, 652, 712, 1026, 1145
Kzo9I	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
LmnI	GCTCC	1 cut(s)	401
Lsp1109I	GCAGC	5 cut(s)	391, 450, 670, 752, 821
LweI	GCATC	2 cut(s)	646, 1076
MaeI	CTAG	4 cut(s)	120, 441, 930, 1201
MaeII	ACGT	4 cut(s)	21, 480, 575, 1097
MalI	GATC	6 cut(s)	172, 310, 567, 793, 818, 1044
MboI	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
MboII	GAAGA	8 cut(s)	72, 212, 222, 394, 649, 918, 987, 1082
MflI	RGATCY	2 cut(s)	816, 1042
MhlI	GDGCHC	1 cut(s)	993
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	4 cut(s)	153, 330, 527, 826
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	2 cut(s)	357, 691
MmeI	TCCRAC	2 cut(s)	633, 923
MnlI	CCTC	9 cut(s)	127, 211, 481, 515, 665, 718, 1003, 1066, 1144
Mox20I	TGGCCA	1 cut(s)	879
Mph1103I	ATGCAT	1 cut(s)	197
MroXI	GAANNNNTTC	3 cut(s)	386, 586, 802
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	5 cut(s)	30, 333, 425, 545, 614
Msp20I	TGGCCA	1 cut(s)	879
MspI	CCGG	4 cut(s)	267, 965, 1171, 1185
MspR9I	CCNGG	2 cut(s)	881, 972
MvaI	CCWGG	2 cut(s)	881, 972
MwoI	GCNNNNNNNGC	2 cut(s)	689, 1064
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
NlaIII	CATG	8 cut(s)	151, 362, 400, 540, 652, 712, 1026, 1145
NlaIV	GGNNCC	1 cut(s)	969
NsiI	ATGCAT	1 cut(s)	197
NspI	RCATGY	2 cut(s)	652, 1026
PaeI	GCATGC	1 cut(s)	1026
PagI	TCATGA	2 cut(s)	358, 1141
PciI	ACATGT	1 cut(s)	648
PdmI	GAANNNNTTC	3 cut(s)	386, 586, 802
PfeI	GAWTC	4 cut(s)	178, 551, 728, 863
PflMI	CCANNNNNTGG	1 cut(s)	886
PfoI	TCCNGGA	1 cut(s)	970
PkrI	GCNGC	5 cut(s)	406, 465, 685, 742, 811
PleI	GAGTC	2 cut(s)	356, 691
PpsI	GAGTC	2 cut(s)	356, 691
Ppu21I	YACGTR	1 cut(s)	481
PscI	ACATGT	1 cut(s)	648
PsiI	TTATAA	1 cut(s)	960
Psp6I	CCWGG	2 cut(s)	879, 970
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	2 cut(s)	879, 970
PspN4I	GGNNCC	1 cut(s)	969
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	816, 1042
RsaI	GTAC	3 cut(s)	610, 904, 918
RsaNI	GTAC	3 cut(s)	609, 903, 917
SaqAI	TTAA	5 cut(s)	30, 333, 425, 545, 614
SatI	GCNGC	5 cut(s)	405, 464, 684, 741, 810
Sau3AI	GATC	6 cut(s)	170, 308, 565, 791, 816, 1042
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	904
SchI	GAGTC	2 cut(s)	357, 691
ScrFI	CCNGG	2 cut(s)	881, 972
SduI	GDGCHC	1 cut(s)	993
SfaNI	GCATC	2 cut(s)	646, 1076
SfcI	CTRYAG	2 cut(s)	160, 684
SinI	GGWCC	1 cut(s)	500
SphI	GCATGC	1 cut(s)	1026
Sse9I	AATT	4 cut(s)	153, 330, 527, 826
SsiI	CCGC	3 cut(s)	692, 897, 1014
SspMI	CTAG	4 cut(s)	120, 441, 930, 1201
StyD4I	CCNGG	2 cut(s)	879, 970
StyI	CCWWGG	2 cut(s)	536, 1051
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	4 cut(s)	24, 483, 578, 1100
TaqI	TCGA	1 cut(s)	578
TasI	AATT	4 cut(s)	153, 330, 527, 826
TatI	WGTACW	2 cut(s)	608, 902
TfiI	GAWTC	4 cut(s)	178, 551, 728, 863
Tru1I	TTAA	5 cut(s)	30, 333, 425, 545, 614
Tru9I	TTAA	5 cut(s)	30, 333, 425, 545, 614
TscAI	CASTG	2 cut(s)	101, 180
TseI	GCWGC	5 cut(s)	404, 463, 683, 740, 809
TspDTI	ATGAA	5 cut(s)	17, 347, 543, 697, 1158
TspRI	CASTG	2 cut(s)	101, 180
Van91I	CCANNNNNTGG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	500
XagI	CCTNNNNNAGG	1 cut(s)	997
XbaI	TCTAGA	1 cut(s)	119
XceI	RCATGY	2 cut(s)	652, 1026
XmiI	GTMKAC	1 cut(s)	483
XmnI	GAANNNNTTC	3 cut(s)	386, 586, 802
XspI	CTAG	4 cut(s)	120, 441, 930, 1201
ZraI	GACGTC	1 cut(s)	1098
ZrmI	AGTACT	1 cut(s)	904
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.