Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004719

Physical Location & Seq

Genomic Coordinates Forward (+)

5954482 .. 5957937

Gene Structure 3456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10220.t10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCAGTCTTGTACAAAGTGAGATCATTGCTTCATCTATCCAAATGTATTTTCACAACAAGAATTTCACCGAGGAGATTTTACTCGGCACAAGTCTCGTCCCAATTTGAGACTGTAGGGTTTATAGGACTGGGAAATATGGGATCCAGAATGGCAAACAATTTAATAAAGGCGGGATACCAAGTAGCTGTTCATGACATAAACTGCAATGCCATGAAAAGGTTCTCTGATATTGGAGCTGCAGCGAAAGAAACTCCTTTTGAAGTTGCAGAAGCTAGTGATGTTGTGATCACAATGCTCCCTACCTCATCTCATGTATATGATGTTTACACCGGACCAAATGGTTTACTTTATGGAGAGAATTTGCTACCACGGTTATTCATAGATTCATCCACTATTGATCCACAAACATCTCGAAAGCTTTCTACCATTGTCTCTAACTGTACACTAAAGAAACAGAAAGAAGATCATTGGAAGAAGCCTGCCTTTCTGGATGCTCCTGTATCTGGAGGTGTCCTTGCCGCAGAAGCTGGGACTCTTACTTTCATGGTTGGTGGATCAGAGGAAGCTTATATGGCGGCTAAACCCTTGTTCCTTTCCATGGGGAAGAACACAGTTTATTGTGGTGGAGCAGGAAATGGTTCAGCTGCAAAGATCTGCAATAATCTGGCACTGGCTATAAGCATGATAGGCATCTCAGAATCGCTTGCTCTTGGTCAGTCTCTAGGAATATCTGCCAGCACTCTAACGAAAGTGTTTAACTCTTCCAGTGCTCGCTGTTGGAGCAGTGATAGTTATAATCCAGTTCCGGGAGTGATGGAAGGGGTTCCATCTTCAAGAAACTATGATGGTGGGTTTGCATCCAAACTCATGGCTAAAGATGTAAACATTGCTGCAACATCAGCCAAAGAGGTTGGTCTTCGATGTCCGTTGACATCCCAAGCACAAGAGATATATACGGAGCTCTGTGAGGATGGCCATGAAACCAAGGACTTCTCCTGTGTATTTCGCCATTATTACTCTGGCAAGAAAGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006551 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008442 GO:0009081 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019752 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

347

Amino Acids

37.15

Weight (kDa)

8.28

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	3 - 138	2.2e-25	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	141 - 247	2.1e-23	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20930 AT4G20930
fragaria_vesca	FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220
malus_domestica	MD05G1271700.v1.1
prunus_persica	Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1
pyrus_communis	pycom05g25400
rosa_chinensis	RchiOBHm_Chr5g0016441
rosa_laevigata	RLG00000032250
rosa_multiflora	Rmu_sc0030879.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060460
rosa_rugosa	Rorug05G0032300 Rorug05G0032400
rosa_samantha	Rh5AG125900 Rh5BG124900 Rh5CG137200 Rh5DG124600
rosa_wichuraiana	Rw5G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AciI	CCGC	3 cut(s)	173, 522, 578
AclWI	GGATC	4 cut(s)	138, 151, 395, 565
AcoI	YGGCCR	1 cut(s)	976
AcsI	RAATTY	2 cut(s)	63, 361
AfaI	GTAC	2 cut(s)	14, 445
AfiI	CCNNNNNNNGG	4 cut(s)	219, 506, 601, 809
AgsI	TTSAA	2 cut(s)	263, 837
AjuI	GAANNNNNNNTTGG	4 cut(s)	35, 67, 174, 206
AluBI	AGCT	8 cut(s)	188, 239, 275, 421, 530, 569, 647, 964
AluI	AGCT	8 cut(s)	188, 239, 275, 421, 530, 569, 647, 964
Alw21I	GWGCWC	2 cut(s)	775, 966
Alw26I	GTCTC	4 cut(s)	100, 104, 439, 726
AlwI	GGATC	4 cut(s)	138, 151, 395, 565
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	1 cut(s)	976
ApeKI	GCWGC	4 cut(s)	239, 242, 647, 893
ApoI	RAATTY	2 cut(s)	63, 361
Asp700I	GAANNNNTTC	4 cut(s)	221, 421, 640, 825
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	810
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	978
BamHI	GGATCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	911
Bbv12I	GWGCWC	2 cut(s)	775, 966
BbvI	GCAGC	4 cut(s)	226, 254, 634, 880
BccI	CCATC	4 cut(s)	811, 838, 842, 968
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	810
BcoDI	GTCTC	4 cut(s)	100, 104, 439, 726
BfaI	CTAG	2 cut(s)	276, 725
BfmI	CTRYAG	2 cut(s)	114, 240
BfuI	GTATCC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	6 cut(s)	240, 243, 522, 579, 648, 894
BlsI	GCNGC	6 cut(s)	241, 244, 523, 580, 649, 895
Bme1390I	CCNGG	1 cut(s)	810
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	145, 828
BmrFI	CCNGG	1 cut(s)	810
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	484, 702, 869
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	911
BpmI	CTGGAG	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	810
BsaBI	GATNNNNATC	1 cut(s)	692
BsaJI	CCNNGG	4 cut(s)	71, 371, 600, 987
BsaWI	WCCGGW	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 506, 601, 809
Bse1I	ACTGG	4 cut(s)	135, 678, 768, 803
Bse3DI	GCAATG	3 cut(s)	26, 214, 888
Bse8I	GATNNNNATC	1 cut(s)	692
BseDI	CCNNGG	4 cut(s)	71, 371, 600, 987
BseGI	GGATG	5 cut(s)	389, 499, 860, 935, 979
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	4 cut(s)	219, 506, 601, 809
BseMI	GCAATG	3 cut(s)	26, 214, 888
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	4 cut(s)	135, 678, 768, 803
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	4 cut(s)	226, 254, 634, 880
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	1 cut(s)	978
BsiHKAI	GWGCWC	2 cut(s)	775, 966
BsiSI	CCGG	2 cut(s)	333, 809
BslFI	GGGAC	2 cut(s)	85, 547
BslI	CCNNNNNNNGG	4 cut(s)	219, 506, 601, 809
BsmAI	GTCTC	4 cut(s)	100, 104, 439, 726
BsmFI	GGGAC	2 cut(s)	85, 547
BsnI	GGCC	1 cut(s)	978
Bsp1286I	GDGCHC	2 cut(s)	775, 966
Bsp1407I	TGTACA	2 cut(s)	12, 443
Bsp143I	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	3 cut(s)	173, 522, 578
BspANI	GGCC	1 cut(s)	978
BspCNI	CTCAG	1 cut(s)	710
BspHI	TCATGA	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	145, 828
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	4 cut(s)	138, 151, 395, 565
BsrDI	GCAATG	3 cut(s)	26, 214, 888
BsrGI	TGTACA	2 cut(s)	12, 443
BsrI	ACTGG	4 cut(s)	135, 678, 768, 803
BssECI	CCNNGG	4 cut(s)	71, 371, 600, 987
BssMI	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
BssT1I	CCWWGG	2 cut(s)	600, 987
Bst4CI	ACNGT	4 cut(s)	115, 375, 443, 616
Bst6I	CTCTTC	1 cut(s)	769
BstAUI	TGTACA	2 cut(s)	12, 443
BstC8I	GCNNGC	4 cut(s)	483, 708, 739, 775
BstDEI	CTNAG	1 cut(s)	697
BstDSI	CCRYGG	2 cut(s)	371, 600
BstF5I	GGATG	5 cut(s)	389, 499, 860, 935, 979
BstKTI	GATC	7 cut(s)	26, 146, 291, 403, 469, 560, 657
BstMAI	GTCTC	4 cut(s)	100, 104, 439, 726
BstMBI	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
BstMWI	GCNNNNNNNGC	5 cut(s)	527, 575, 690, 783, 902
BstSCI	CCNGG	1 cut(s)	808
BstSFI	CTRYAG	2 cut(s)	114, 240
BstV1I	GCAGC	4 cut(s)	226, 254, 634, 880
BstV2I	GAAGAC	1 cut(s)	911
BstX2I	RGATCY	2 cut(s)	143, 654
BstXI	CCANNNNNNTGG	1 cut(s)	871
BstYI	RGATCY	2 cut(s)	143, 654
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	371, 600
BtsCI	GGATG	5 cut(s)	389, 499, 860, 935, 979
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	3 cut(s)	671, 775, 793
Cac8I	GCNNGC	4 cut(s)	483, 708, 739, 775
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	13, 444
CviAII	CATG	8 cut(s)	194, 214, 314, 547, 601, 685, 871, 980
CviQI	GTAC	2 cut(s)	13, 444
DdeI	CTNAG	1 cut(s)	697
DpnI	GATC	7 cut(s)	25, 145, 290, 402, 468, 559, 656
DpnII	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
EaeI	YGGCCR	1 cut(s)	976
Eam1104I	CTCTTC	1 cut(s)	769
EarI	CTCTTC	1 cut(s)	769
Ecl136II	GAGCTC	1 cut(s)	964
Eco130I	CCWWGG	2 cut(s)	600, 987
Eco24I	GRGCYC	1 cut(s)	966
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	964
EcoICRI	GAGCTC	1 cut(s)	964
EcoT14I	CCWWGG	2 cut(s)	600, 987
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	600, 987
FaeI	CATG	8 cut(s)	197, 217, 317, 550, 604, 688, 874, 983
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	85, 547
FatI	CATG	8 cut(s)	193, 213, 313, 546, 600, 684, 870, 979
FauI	CCCGC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	6 cut(s)	240, 243, 522, 579, 648, 894
FokI	GGATG	5 cut(s)	376, 506, 847, 922, 986
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	6 cut(s)	240, 243, 522, 579, 648, 894
FspBI	CTAG	2 cut(s)	276, 725
GluI	GCNGC	6 cut(s)	240, 243, 522, 579, 648, 894
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	978
HapII	CCGG	2 cut(s)	333, 809
Hin1II	CATG	8 cut(s)	197, 217, 317, 550, 604, 688, 874, 983
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HindIII	AAGCTT	2 cut(s)	419, 567
HinfI	GANTC	3 cut(s)	386, 535, 701
HpaII	CCGG	2 cut(s)	333, 809
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	5 cut(s)	328, 347, 446, 886, 933
Hpy188I	TCNGA	3 cut(s)	229, 562, 700
Hpy188III	TCNNGA	6 cut(s)	147, 194, 414, 491, 507, 837
Hpy8I	GTNNAC	5 cut(s)	328, 347, 446, 886, 933
HpyAV	CCTTC	1 cut(s)	815
HpyCH4III	ACNGT	4 cut(s)	115, 375, 443, 616
HpyCH4V	TGCA	7 cut(s)	207, 242, 269, 650, 660, 860, 896
HpyF10VI	GCNNNNNNNGC	5 cut(s)	527, 575, 690, 783, 902
HpyF3I	CTNAG	1 cut(s)	697
Hsp92II	CATG	8 cut(s)	197, 217, 317, 550, 604, 688, 874, 983
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
LmnI	GCTCC	6 cut(s)	236, 303, 502, 629, 783, 961
Lsp1109I	GCAGC	4 cut(s)	226, 254, 634, 880
LweI	GCATC	3 cut(s)	484, 702, 869
MaeI	CTAG	2 cut(s)	276, 725
MalI	GATC	7 cut(s)	25, 145, 290, 402, 468, 559, 656
MboI	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
MboII	GAAGA	6 cut(s)	476, 487, 619, 756, 825, 911
MflI	RGATCY	2 cut(s)	143, 654
MhlI	GDGCHC	2 cut(s)	775, 966
MlsI	TGGCCA	1 cut(s)	978
MluCI	AATT	4 cut(s)	63, 104, 160, 361
MluNI	TGGCCA	1 cut(s)	978
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	6 cut(s)	66, 316, 503, 556, 904, 964
Mox20I	TGGCCA	1 cut(s)	978
MroXI	GAANNNNTTC	4 cut(s)	221, 421, 640, 825
MscI	TGGCCA	1 cut(s)	978
MseI	TTAA	2 cut(s)	164, 759
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	978
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	2 cut(s)	333, 809
MspR9I	CCNGG	1 cut(s)	810
MwoI	GCNNNNNNNGC	5 cut(s)	527, 575, 690, 783, 902
NciI	CCSGG	1 cut(s)	810
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
NlaIII	CATG	8 cut(s)	197, 217, 317, 550, 604, 688, 874, 983
NlaIV	GGNNCC	2 cut(s)	145, 828
NmeAIII	GCCGAG	1 cut(s)	65
PagI	TCATGA	1 cut(s)	193
PdmI	GAANNNNTTC	4 cut(s)	221, 421, 640, 825
PfeI	GAWTC	2 cut(s)	386, 701
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	6 cut(s)	241, 244, 523, 580, 649, 895
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PsiI	TTATAA	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	966
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	145, 828
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	143, 654
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	2 cut(s)	14, 445
RsaNI	GTAC	2 cut(s)	13, 444
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	966
SaqAI	TTAA	2 cut(s)	164, 759
SatI	GCNGC	6 cut(s)	240, 243, 522, 579, 648, 894
Sau3AI	GATC	7 cut(s)	23, 143, 288, 400, 466, 557, 654
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	810
SduI	GDGCHC	2 cut(s)	775, 966
SfaNI	GCATC	3 cut(s)	484, 702, 869
SfcI	CTRYAG	2 cut(s)	114, 240
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	4 cut(s)	63, 104, 160, 361
SsiI	CCGC	3 cut(s)	173, 522, 578
SspMI	CTAG	2 cut(s)	276, 725
SstI	GAGCTC	1 cut(s)	966
StyD4I	CCNGG	1 cut(s)	808
StyI	CCWWGG	2 cut(s)	600, 987
TaaI	ACNGT	4 cut(s)	115, 375, 443, 616
TaqI	TCGA	2 cut(s)	415, 922
TasI	AATT	4 cut(s)	63, 104, 160, 361
TatI	WGTACW	2 cut(s)	12, 443
TauI	GCSGC	2 cut(s)	524, 581
TfiI	GAWTC	2 cut(s)	386, 701
Tru1I	TTAA	2 cut(s)	164, 759
Tru9I	TTAA	2 cut(s)	164, 759
TscAI	CASTG	3 cut(s)	678, 775, 793
TseI	GCWGC	4 cut(s)	239, 242, 647, 893
TspDTI	ATGAA	7 cut(s)	23, 182, 230, 370, 378, 535, 996
TspGWI	ACGGA	2 cut(s)	918, 974
TspRI	CASTG	3 cut(s)	678, 775, 793
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	2 cut(s)	63, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1019
XmnI	GAANNNNTTC	4 cut(s)	221, 421, 640, 825
XspI	CTAG	2 cut(s)	276, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.