Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004719

Physical Location & Seq

Genomic Coordinates Forward (+)

4552417 .. 4556295

Gene Structure 3879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G091300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAATCTTCTACAGAGTGAGGTCACTGAATTATGTTTCCAAATGCTTTTCCTCAATCAACGCTCTTTATCTTCAGTCTCCAATACGCAGATTTTATTCAGAACAAGCCACGTCTCATTTTGAGAGTGTTGGGTTTGTAGGACTGGGAAATATGGGATCCAGAATGGCAAATAATCTAATTAAGGCTGGATACCGAGTAGCTGTTCATGACATAAACTGCAATGCTATGAAGAAGTTCTCTGACATGGGAGTTGAAACAAAAGAAACCCCTTTAGAAGTTGCAGAAGCTAGTGATGTTGTAATCACAATGCTGCCTTCCTCATCTCATGTATATGATGTTTATACTGGACCTAATGGCTTGCTTCATGGAGGGGAATTGCGACCATGGTTATTAATAGATTCATCTACTATCGATCCGCAAACATCGAGAAAGCTTTCTCTTGCTGTGTCTAACTGTACTTTGAAGGAGAAAAGAGATTATGCGAAGAAGCCTGCCATGTTGGATGCTCCTGTATCTGGAGGTGTTCTTGCTGCAGAAGCTGGGACTCTTACTTTCATGGTTGGTGGCTCTGAGGAAGCTTATCTAGCTGCAAAATCTTTATTCCTTTCAATAGGCAAGAACACAGTTTTTTGTGGTGGACCAGGAAATGGTTCAGCAGCAAAGATCTGCAATAATTTGGCAATGGCTATTAGTATGCTTGGTGTCTCAGAATCGGTTGCCCTTGGCCAGTCTCTGGGAATTTCCGCCAGTACTTTGACAAGAGTACTCAACTCTTCCAGTGGTCGCTGTTGGAGTAGTGATAGTTATAATCCAGTTCCTGGAGTGATGGAAGGGGTGCCCTCTTCGAGGAACTATGATGGTGGGTTCGCATCAAAACTTATGGCTAAAGATCTAAACCTTGGTGCAACATCAGCCAAAGAGGTTGGCCTTAAATGCCCATTGACATCCCAAGCACAAGAGATATACACAGAGCTTTGTGAGGATGGTCATGAAACCGAAGACTTCTCGTGCGTTTTCCGTCATTATTACTCGGGAAAGAATGAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006551 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008442 GO:0009081 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019752 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

351

Amino Acids

37.47

Weight (kDa)

6.33

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20930 AT4G20930
fragaria_vesca	FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220
malus_domestica	MD05G1271700.v1.1
prunus_persica	Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1
pyrus_communis	pycom05g25400
rosa_chinensis	RchiOBHm_Chr5g0016441
rosa_laevigata	RLG00000032250
rosa_multiflora	Rmu_sc0030879.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060460
rosa_rugosa	Rorug05G0032300 Rorug05G0032400
rosa_samantha	Rh5AG125900 Rh5BG124900 Rh5CG137200 Rh5DG124600
rosa_wichuraiana	Rw5G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	838
AccB7I	CCANNNNNTGG	3 cut(s)	650, 736, 821
AciI	CCGC	2 cut(s)	419, 747
AclWI	GGATC	3 cut(s)	153, 166, 410
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	741
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	3 cut(s)	460, 754, 768
AfiI	CCNNNNNNNGG	5 cut(s)	518, 650, 736, 821, 849
AgsI	TTSAA	3 cut(s)	257, 466, 612
AjiI	CACGTC	1 cut(s)	114
AjnI	CCWGG	2 cut(s)	643, 820
AluBI	AGCT	7 cut(s)	203, 290, 436, 542, 581, 590, 976
AluI	AGCT	7 cut(s)	203, 290, 436, 542, 581, 590, 976
Alw26I	GTCTC	5 cut(s)	84, 120, 712, 738, 1040
AlwI	GGATC	3 cut(s)	153, 166, 410
AlwNI	CAGNNNCTG	3 cut(s)	542, 736, 821
Ama87I	CYCGRG	1 cut(s)	1033
AoxI	GGCC	2 cut(s)	727, 928
ApeKI	GCWGC	4 cut(s)	313, 533, 590, 659
ApoI	RAATTY	1 cut(s)	741
AseI	ATTAAT	1 cut(s)	395
Asp700I	GAANNNNTTC	3 cut(s)	236, 436, 652
AspS9I	GGNCC	2 cut(s)	350, 641
AvaI	CYCGRG	1 cut(s)	1033
AvaII	GGWCC	2 cut(s)	350, 641
BaeGI	GKGCMC	1 cut(s)	843
BalI	TGGCCA	1 cut(s)	729
BamHI	GGATCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	838
BauI	CACGAG	1 cut(s)	1009
BbsI	GAAGAC	1 cut(s)	1008
BbvI	GCAGC	4 cut(s)	300, 520, 577, 671
BccI	CCATC	3 cut(s)	823, 854, 980
BciT130I	CCWGG	2 cut(s)	645, 822
BciVI	GTATCC	1 cut(s)	185
BcoDI	GTCTC	5 cut(s)	84, 120, 712, 738, 1040
BfaI	CTAG	2 cut(s)	291, 587
BfmI	CTRYAG	2 cut(s)	13, 534
BfuI	GTATCC	1 cut(s)	185
BglII	AGATCT	2 cut(s)	666, 892
BisI	GCNGC	4 cut(s)	314, 534, 591, 660
BlsI	GCNGC	4 cut(s)	315, 535, 592, 661
BmcAI	AGTACT	2 cut(s)	754, 768
Bme1390I	CCNGG	2 cut(s)	645, 822
Bme18I	GGWCC	2 cut(s)	350, 641
BmeT110I	CYCGRG	1 cut(s)	1033
BmgBI	CACGTC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	350, 641
BmiI	GGNNCC	2 cut(s)	160, 840
BmrFI	CCNGG	2 cut(s)	645, 822
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	496, 881
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	2 cut(s)	540, 843
Bsa29I	ATCGAT	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	386, 724, 901
Bsc4I	CCNNNNNNNGG	5 cut(s)	518, 650, 736, 821, 849
Bse1I	ACTGG	6 cut(s)	150, 352, 730, 750, 780, 815
Bse3DI	GCAATG	2 cut(s)	229, 690
BseBI	CCWGG	2 cut(s)	645, 822
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	3 cut(s)	386, 724, 901
BseGI	GGATG	3 cut(s)	511, 947, 991
BseLI	CCNNNNNNNGG	5 cut(s)	518, 650, 736, 821, 849
BseMI	GCAATG	2 cut(s)	229, 690
BseMII	CTCAG	2 cut(s)	564, 723
BseNI	ACTGG	6 cut(s)	150, 352, 730, 750, 780, 815
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	4 cut(s)	300, 520, 577, 671
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	729, 930
BshNI	GGYRCC	1 cut(s)	838
BshVI	ATCGAT	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	1033
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	5 cut(s)	518, 650, 736, 821, 849
BsmAI	GTCTC	5 cut(s)	84, 120, 712, 738, 1040
BsmBI	CGTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	559
BsnI	GGCC	2 cut(s)	729, 930
BsoBI	CYCGRG	1 cut(s)	1033
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	4 cut(s)	158, 415, 666, 892
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	2 cut(s)	419, 747
BspANI	GGCC	2 cut(s)	729, 930
BspCNI	CTCAG	2 cut(s)	565, 722
BspDI	ATCGAT	1 cut(s)	414
BspHI	TCATGA	2 cut(s)	208, 991
BspLI	GGNNCC	2 cut(s)	160, 840
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	3 cut(s)	153, 166, 410
BspT107I	GGYRCC	1 cut(s)	838
BsrDI	GCAATG	2 cut(s)	229, 690
BsrI	ACTGG	6 cut(s)	150, 352, 730, 750, 780, 815
BssECI	CCNNGG	3 cut(s)	386, 724, 901
BssMI	GATC	4 cut(s)	158, 415, 666, 892
BssSI	CACGAG	1 cut(s)	1009
BssT1I	CCWWGG	3 cut(s)	386, 724, 901
Bst2BI	CACGAG	1 cut(s)	1009
Bst2UI	CCWGG	2 cut(s)	645, 822
Bst4CI	ACNGT	2 cut(s)	458, 628
Bst6I	CTCTTC	2 cut(s)	781, 850
BstC8I	GCNNGC	2 cut(s)	362, 495
BstDEI	CTNAG	3 cut(s)	573, 709, 1050
BstDSI	CCRYGG	1 cut(s)	386
BstENI	CCTNNNNNAGG	1 cut(s)	847
BstF5I	GGATG	3 cut(s)	511, 947, 991
BstKTI	GATC	4 cut(s)	161, 418, 669, 895
BstMAI	GTCTC	5 cut(s)	84, 120, 712, 738, 1040
BstMBI	GATC	4 cut(s)	158, 415, 666, 892
BstMWI	GCNNNNNNNGC	4 cut(s)	539, 587, 914, 936
BstNI	CCWGG	2 cut(s)	645, 822
BstSCI	CCNGG	2 cut(s)	643, 820
BstSFI	CTRYAG	2 cut(s)	13, 534
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	4 cut(s)	300, 520, 577, 671
BstV2I	GAAGAC	1 cut(s)	1008
BstX2I	RGATCY	3 cut(s)	158, 666, 892
BstYI	RGATCY	3 cut(s)	158, 666, 892
Bsu15I	ATCGAT	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	729, 930
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	511, 947, 991
BtsIMutI	CAGTG	2 cut(s)	26, 787
Cac8I	GCNNGC	2 cut(s)	362, 495
CaiI	CAGNNNCTG	3 cut(s)	542, 736, 821
CciI	TCATGA	2 cut(s)	208, 991
Cfr13I	GGNCC	2 cut(s)	350, 641
ClaI	ATCGAT	1 cut(s)	414
Csp6I	GTAC	3 cut(s)	459, 753, 767
CviAII	CATG	8 cut(s)	209, 247, 329, 368, 387, 499, 559, 992
CviQI	GTAC	3 cut(s)	459, 753, 767
DdeI	CTNAG	3 cut(s)	573, 709, 1050
DpnI	GATC	4 cut(s)	160, 417, 668, 894
DpnII	GATC	4 cut(s)	158, 415, 666, 892
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	2 cut(s)	781, 850
EarI	CTCTTC	2 cut(s)	781, 850
EciI	GGCGGA	1 cut(s)	736
Eco130I	CCWWGG	3 cut(s)	386, 724, 901
Eco47I	GGWCC	2 cut(s)	350, 641
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	1033
EcoNI	CCTNNNNNAGG	1 cut(s)	847
EcoRII	CCWGG	2 cut(s)	643, 820
EcoT14I	CCWWGG	3 cut(s)	386, 724, 901
ErhI	CCWWGG	3 cut(s)	386, 724, 901
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	8 cut(s)	212, 250, 332, 371, 390, 502, 562, 995
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	8 cut(s)	208, 246, 328, 367, 386, 498, 558, 991
Fnu4HI	GCNGC	4 cut(s)	314, 534, 591, 660
FokI	GGATG	3 cut(s)	518, 934, 998
Fsp4HI	GCNGC	4 cut(s)	314, 534, 591, 660
FspBI	CTAG	2 cut(s)	291, 587
GluI	GCNGC	4 cut(s)	314, 534, 591, 660
GsaI	CCCAGC	1 cut(s)	546
GsuI	CTGGAG	2 cut(s)	540, 843
HaeIII	GGCC	2 cut(s)	729, 930
Hin1II	CATG	8 cut(s)	212, 250, 332, 371, 390, 502, 562, 995
HindIII	AAGCTT	2 cut(s)	434, 579
HinfI	GANTC	3 cut(s)	401, 547, 713
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	4 cut(s)	103, 244, 574, 712
Hpy188III	TCNNGA	6 cut(s)	162, 209, 429, 519, 992, 1035
Hpy8I	GTNNAC	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	327, 460, 827
HpyCH4III	ACNGT	2 cut(s)	458, 628
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	6 cut(s)	222, 284, 536, 593, 672, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	539, 587, 914, 936
HpyF3I	CTNAG	3 cut(s)	573, 709, 1050
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	8 cut(s)	212, 250, 332, 371, 390, 502, 562, 995
Kzo9I	GATC	4 cut(s)	158, 415, 666, 892
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	4 cut(s)	300, 520, 577, 671
LweI	GCATC	2 cut(s)	496, 881
MaeI	CTAG	2 cut(s)	291, 587
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	4 cut(s)	160, 417, 668, 894
MboI	GATC	4 cut(s)	158, 415, 666, 892
MboII	GAAGA	6 cut(s)	65, 244, 499, 768, 837, 1013
MflI	RGATCY	3 cut(s)	158, 666, 892
MhlI	GDGCHC	1 cut(s)	843
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	5 cut(s)	31, 180, 377, 676, 741
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	483, 773
Mox20I	TGGCCA	1 cut(s)	729
MroXI	GAANNNNTTC	3 cut(s)	236, 436, 652
MscI	TGGCCA	1 cut(s)	729
MseI	TTAA	3 cut(s)	183, 395, 933
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	729
MspR9I	CCNGG	2 cut(s)	645, 822
MvaI	CCWGG	2 cut(s)	645, 822
MwoI	GCNNNNNNNGC	4 cut(s)	539, 587, 914, 936
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	4 cut(s)	158, 415, 666, 892
NlaIII	CATG	8 cut(s)	212, 250, 332, 371, 390, 502, 562, 995
NlaIV	GGNNCC	2 cut(s)	160, 840
NmuCI	GTSAC	1 cut(s)	24
PagI	TCATGA	2 cut(s)	208, 991
PdmI	GAANNNNTTC	3 cut(s)	236, 436, 652
PfeI	GAWTC	2 cut(s)	401, 713
PflMI	CCANNNNNTGG	3 cut(s)	650, 736, 821
PfoI	TCCNGGA	1 cut(s)	820
PkrI	GCNGC	4 cut(s)	315, 535, 592, 661
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PshBI	ATTAAT	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	810
Psp6I	CCWGG	2 cut(s)	643, 820
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	643, 820
PspN4I	GGNNCC	2 cut(s)	160, 840
PspPI	GGNCC	2 cut(s)	350, 641
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	3 cut(s)	542, 736, 821
PsuI	RGATCY	3 cut(s)	158, 666, 892
RsaI	GTAC	3 cut(s)	460, 754, 768
RsaNI	GTAC	3 cut(s)	459, 753, 767
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	183, 395, 933
SatI	GCNGC	4 cut(s)	314, 534, 591, 660
Sau3AI	GATC	4 cut(s)	158, 415, 666, 892
Sau96I	GGNCC	2 cut(s)	350, 641
ScaI	AGTACT	2 cut(s)	754, 768
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	645, 822
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	2 cut(s)	496, 881
SfcI	CTRYAG	2 cut(s)	13, 534
SinI	GGWCC	2 cut(s)	350, 641
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	5 cut(s)	31, 180, 377, 676, 741
SsiI	CCGC	2 cut(s)	419, 747
SspMI	CTAG	2 cut(s)	291, 587
StyD4I	CCNGG	2 cut(s)	643, 820
StyI	CCWWGG	3 cut(s)	386, 724, 901
TaaI	ACNGT	2 cut(s)	458, 628
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	414, 428, 848
TasI	AATT	5 cut(s)	31, 180, 377, 676, 741
TatI	WGTACW	3 cut(s)	458, 752, 766
TfiI	GAWTC	2 cut(s)	401, 713
Tru1I	TTAA	3 cut(s)	183, 395, 933
Tru9I	TTAA	3 cut(s)	183, 395, 933
TscAI	CASTG	2 cut(s)	33, 787
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	4 cut(s)	313, 533, 590, 659
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	6 cut(s)	197, 245, 356, 393, 547, 1008
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	2 cut(s)	33, 787
Van91I	CCANNNNNTGG	3 cut(s)	650, 736, 821
VpaK11BI	GGWCC	2 cut(s)	350, 641
VspI	ATTAAT	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	847
XapI	RAATTY	1 cut(s)	741
XmnI	GAANNNNTTC	3 cut(s)	236, 436, 652
XspI	CTAG	2 cut(s)	291, 587
ZrmI	AGTACT	2 cut(s)	754, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.