Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004719

Physical Location & Seq

Genomic Coordinates Reverse (-)

2083328 .. 2087121

Gene Structure 3794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0032300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGACTCGGACCCACCGTTTCACAAGGCCTACAAGACTTTTTTCGACAACGCCAGCACCAGCACCGCCACTACCAACAACAACAACAATAACAAAGACAACAAAGACCAGGAAGCGATAAAGGTAATCGTCGAGGAATGCGAGCTGCCGCTGATTGATCTGCGGCGGCTAGAGCTCGGAGACTCCGAGGGAGAGGAGTGCAAGTCGGAGATAGCTAGGGCATCGCAGGAGTGGGGATTTTTTCAGGTTGTGAACCATGGGATTTCAAGCGAGCTTTTGCAGAAGATGAAGAGTGAGCAAGAAAAGGTATTCCAGCAATCGTTTGACAAGAAGAGCCAAGAACACAAGTACTTGAACTTTTCGGCAGGTACTTACCGTTGGGGAAGTCCTACGGCCACAAGCCTGAGACAGTTATCATGGTCTGAAGCTTTTCACATTCCACTCAACAAGATTTTTGCTTCCTCGGCTGCTGGTCTCGACGATCTCAGCTCAACGATGGAACAGTTTGCCACAACAGTTTCTAGTCTAGCACTGAAATTAGCTGAAATTTTGGCCGAGAAATTGGATCACAAATCGACATTCTTCCACGAAAATTGTTTACCGAGCACTTGCTATCTTCGGATGAACCGATATCCACCATGTCCAATTCCTTCAGAGGTATTTGGATTGATGCCACACACTGACAGTGACTTTCTCACTATATTGCATCAAGACCAGGTTGGGGGATTGCAATTGGTCAAAGATGATCGATGGATCGCAGTGAAGCCTAATCCAGAAGCTCTAATCATCAACATTGGGGATTTATTTCAGGCATGGAGCAACAATGTCTACAAGAGTGTTCAGCATCGAGTTGTCACAAATTTGCAAGTTGAACGATTCTCCACTGCATACTTCTTTTGTCCATCTTATGAAACCATGATAGAGAGTTGTTGCGAGCCTTCGGTTTATAGAAAATTCAGCTTTGGGGAATATCGACACCAAGTCCAAGAGGATGTTAAACAATTGGGTTCTAAAGTAGGCCTTCCTAGGTTTCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006551 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008442 GO:0009081 GO:0009987 GO:0016491 GO:0016614 GO:0016616 GO:0019752 GO:0043436 GO:0043621 GO:0044237 GO:0044238 GO:0044281 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

346

Amino Acids

39.44

Weight (kDa)

5.53

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	49 - 146	1.4e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	204 - 301	6e-33	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20930 AT4G20930
fragaria_vesca	FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220 FvH4_3g10220
malus_domestica	MD05G1271700.v1.1
prunus_persica	Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1 Prupe.4G091300_v2.0.a1
pyrus_communis	pycom05g25400
rosa_chinensis	RchiOBHm_Chr5g0016441
rosa_laevigata	RLG00000032250
rosa_multiflora	Rmu_sc0030879.1_g000005
rosa_roxburghii	Rroxscaffold_1G00060460
rosa_rugosa	Rorug05G0032300 Rorug05G0032400
rosa_samantha	Rh5AG125900 Rh5BG124900 Rh5CG137200 Rh5DG124600
rosa_wichuraiana	Rw5G010910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	828
AciI	CCGC	4 cut(s)	66, 149, 163, 166
AclWI	GGATC	2 cut(s)	573, 761
AcoI	YGGCCR	2 cut(s)	393, 552
AcsI	RAATTY	3 cut(s)	546, 859, 953
AcuI	CTGAAG	2 cut(s)	444, 636
AfaI	GTAC	2 cut(s)	350, 370
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	3 cut(s)	267, 355, 872
AhdI	GACNNNNNGTC	1 cut(s)	980
AjnI	CCWGG	2 cut(s)	108, 714
AluBI	AGCT	9 cut(s)	145, 175, 215, 274, 428, 489, 542, 779, 960
AluI	AGCT	9 cut(s)	145, 175, 215, 274, 428, 489, 542, 779, 960
Alw21I	GWGCWC	2 cut(s)	177, 608
Alw26I	GTCTC	3 cut(s)	174, 400, 479
AlwI	GGATC	2 cut(s)	573, 761
AoxI	GGCC	4 cut(s)	27, 393, 552, 1018
ApeKI	GCWGC	2 cut(s)	145, 467
ApoI	RAATTY	3 cut(s)	546, 859, 953
Asp700I	GAANNNNTTC	1 cut(s)	429
AspA2I	CCTAGG	1 cut(s)	1025
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
AvrII	CCTAGG	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	177
Bbv12I	GWGCWC	2 cut(s)	177, 608
BbvI	GCAGC	2 cut(s)	132, 454
BccI	CCATC	3 cut(s)	490, 744, 910
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	2 cut(s)	110, 716
BcoDI	GTCTC	3 cut(s)	174, 400, 479
BfaI	CTAG	5 cut(s)	170, 216, 522, 527, 1026
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	146, 149, 164, 167, 468
BlnI	CCTAGG	1 cut(s)	1025
BlsI	GCNGC	5 cut(s)	147, 150, 165, 168, 469
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	110, 716
Bme18I	GGWCC	1 cut(s)	10
BmeRI	GACNNNNNGTC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	110, 716
BmsI	GCATC	4 cut(s)	230, 660, 715, 853
Bsa29I	ATCGAT	1 cut(s)	748
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	4 cut(s)	186, 256, 462, 1025
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	110, 716
BseCI	ATCGAT	1 cut(s)	748
BseDI	CCNNGG	4 cut(s)	186, 256, 462, 1025
BseGI	GGATG	2 cut(s)	627, 997
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	395, 499
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	132, 454
BshFI	GGCC	4 cut(s)	29, 395, 554, 1020
BshVI	ATCGAT	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	177, 608
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	3 cut(s)	174, 400, 479
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	29, 395, 554, 1020
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	177, 608
Bsp143I	GATC	5 cut(s)	157, 481, 565, 745, 753
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	4 cut(s)	66, 149, 163, 166
BspANI	GGCC	4 cut(s)	29, 395, 554, 1020
BspCNI	CTCAG	2 cut(s)	396, 498
BspDI	ATCGAT	1 cut(s)	748
BspLI	GGNNCC	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	573, 761
BspQI	GCTCTTC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	479
BssECI	CCNNGG	4 cut(s)	186, 256, 462, 1025
BssMI	GATC	5 cut(s)	157, 481, 565, 745, 753
BssT1I	CCWWGG	2 cut(s)	256, 1025
Bst2UI	CCWGG	2 cut(s)	110, 716
Bst4CI	ACNGT	6 cut(s)	18, 377, 411, 504, 517, 686
Bst6I	CTCTTC	2 cut(s)	284, 326
BstC8I	GCNNGC	4 cut(s)	55, 143, 272, 935
BstDEI	CTNAG	2 cut(s)	404, 485
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	627, 997
BstKTI	GATC	5 cut(s)	160, 484, 568, 748, 756
BstMAI	GTCTC	3 cut(s)	174, 400, 479
BstMBI	GATC	5 cut(s)	157, 481, 565, 745, 753
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 464
BstNI	CCWGG	2 cut(s)	110, 716
BstSCI	CCNGG	2 cut(s)	108, 714
BstV1I	GCAGC	2 cut(s)	132, 454
Bsu15I	ATCGAT	1 cut(s)	748
BsuRI	GGCC	4 cut(s)	29, 395, 554, 1020
BsuTUI	ATCGAT	1 cut(s)	748
BtgI	CCRYGG	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	627, 997
BtsI	GCAGTG	2 cut(s)	765, 882
BtsIMutI	CAGTG	5 cut(s)	530, 678, 691, 765, 882
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	4 cut(s)	55, 143, 272, 935
Cfr13I	GGNCC	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	748
CsiI	ACCWGGT	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	349, 369
CspCI	CAANNNNNGTGG	2 cut(s)	575, 610
CviAII	CATG	5 cut(s)	257, 417, 639, 813, 916
CviQI	GTAC	2 cut(s)	349, 369
DdeI	CTNAG	2 cut(s)	404, 485
DpnI	GATC	5 cut(s)	159, 483, 567, 747, 755
DpnII	GATC	5 cut(s)	157, 481, 565, 745, 753
DriI	GACNNNNNGTC	1 cut(s)	980
EaeI	YGGCCR	2 cut(s)	393, 552
Eam1104I	CTCTTC	2 cut(s)	284, 326
Eam1105I	GACNNNNNGTC	1 cut(s)	980
EarI	CTCTTC	2 cut(s)	284, 326
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	256, 1025
Eco147I	AGGCCT	2 cut(s)	29, 1020
Eco24I	GRGCYC	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	479
Eco32I	GATATC	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	444, 636
EcoICRI	GAGCTC	1 cut(s)	175
EcoRII	CCWGG	2 cut(s)	108, 714
EcoRV	GATATC	1 cut(s)	632
EcoT14I	CCWWGG	2 cut(s)	256, 1025
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	2 cut(s)	256, 1025
FaeI	CATG	5 cut(s)	260, 420, 642, 816, 919
FaiI	YATR	9 cut(s)	258, 418, 640, 701, 814, 889, 909, 917, 948
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FatI	CATG	5 cut(s)	256, 416, 638, 812, 915
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	5 cut(s)	146, 149, 164, 167, 468
FokI	GGATG	2 cut(s)	634, 1004
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	146, 149, 164, 167, 468
FspBI	CTAG	5 cut(s)	170, 216, 522, 527, 1026
GluI	GCNGC	5 cut(s)	146, 149, 164, 167, 468
HaeIII	GGCC	4 cut(s)	29, 395, 554, 1020
Hin1II	CATG	5 cut(s)	260, 420, 642, 816, 919
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	5, 182, 876
Hpy166II	GTNNAC	3 cut(s)	253, 599, 829
Hpy188I	TCNGA	7 cut(s)	10, 179, 187, 208, 424, 621, 655
Hpy188III	TCNNGA	3 cut(s)	476, 710, 773
Hpy8I	GTNNAC	3 cut(s)	253, 599, 829
Hpy99I	CGWCG	2 cut(s)	134, 482
HpyAV	CCTTC	3 cut(s)	660, 948, 1031
HpyCH4III	ACNGT	6 cut(s)	18, 377, 411, 504, 517, 686
HpyCH4V	TGCA	6 cut(s)	201, 280, 706, 730, 865, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 464
HpyF3I	CTNAG	2 cut(s)	404, 485
Hsp92II	CATG	5 cut(s)	260, 420, 642, 816, 919
Kzo9I	GATC	5 cut(s)	157, 481, 565, 745, 753
LguI	GCTCTTC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	816
Lsp1109I	GCAGC	2 cut(s)	132, 454
LweI	GCATC	4 cut(s)	230, 660, 715, 853
MabI	ACCWGGT	1 cut(s)	714
MaeI	CTAG	5 cut(s)	170, 216, 522, 527, 1026
MaeIII	GTNAC	2 cut(s)	686, 853
MalI	GATC	5 cut(s)	159, 483, 567, 747, 755
MboI	GATC	5 cut(s)	157, 481, 565, 745, 753
MboII	GAAGA	5 cut(s)	295, 301, 343, 574, 608
MfeI	CAATTG	2 cut(s)	731, 1001
MhlI	GDGCHC	2 cut(s)	177, 608
MluCI	AATT	9 cut(s)	536, 546, 560, 592, 645, 731, 859, 953, 1001
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	127, 181, 187, 472, 649, 982
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	1 cut(s)	996
MspA1I	CMGCKG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	110, 716
MunI	CAATTG	2 cut(s)	731, 1001
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	110, 716
MwoI	GCNNNNNNNGC	2 cut(s)	172, 464
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	5 cut(s)	157, 481, 565, 745, 753
NlaIII	CATG	5 cut(s)	260, 420, 642, 816, 919
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	2 cut(s)	443, 580
NmuCI	GTSAC	2 cut(s)	686, 853
PceI	AGGCCT	2 cut(s)	29, 1020
PciSI	GCTCTTC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	4 cut(s)	14, 138, 183, 625
PctI	GAATGC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	5 cut(s)	147, 150, 165, 168, 469
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	108, 714
PspGI	CCWGG	2 cut(s)	108, 714
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	10
RsaI	GTAC	2 cut(s)	350, 370
RsaNI	GTAC	2 cut(s)	349, 369
SacI	GAGCTC	1 cut(s)	177
SapI	GCTCTTC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	996
SatI	GCNGC	5 cut(s)	146, 149, 164, 167, 468
Sau3AI	GATC	5 cut(s)	157, 481, 565, 745, 753
Sau96I	GGNCC	1 cut(s)	10
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	110, 716
SduI	GDGCHC	2 cut(s)	177, 608
SexAI	ACCWGGT	1 cut(s)	714
SfaNI	GCATC	4 cut(s)	230, 660, 715, 853
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	9 cut(s)	536, 546, 560, 592, 645, 731, 859, 953, 1001
SseBI	AGGCCT	2 cut(s)	29, 1020
SsiI	CCGC	4 cut(s)	66, 149, 163, 166
SspMI	CTAG	5 cut(s)	170, 216, 522, 527, 1026
SstI	GAGCTC	1 cut(s)	177
StuI	AGGCCT	2 cut(s)	29, 1020
StyD4I	CCNGG	2 cut(s)	108, 714
StyI	CCWWGG	2 cut(s)	256, 1025
TaaI	ACNGT	6 cut(s)	18, 377, 411, 504, 517, 686
TaqI	TCGA	7 cut(s)	45, 132, 477, 575, 748, 847, 973
TasI	AATT	9 cut(s)	536, 546, 560, 592, 645, 731, 859, 953, 1001
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	3 cut(s)	151, 166, 169
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	1 cut(s)	996
Tru9I	TTAA	1 cut(s)	996
TscAI	CASTG	5 cut(s)	537, 685, 691, 765, 889
TseFI	GTSAC	2 cut(s)	686, 853
TseI	GCWGC	2 cut(s)	145, 467
Tsp45I	GTSAC	2 cut(s)	686, 853
TspDTI	ATGAA	3 cut(s)	302, 638, 924
TspRI	CASTG	5 cut(s)	537, 685, 691, 765, 889
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	3 cut(s)	546, 859, 953
XmaJI	CCTAGG	1 cut(s)	1025
XmiI	GTMKAC	1 cut(s)	828
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	5 cut(s)	170, 216, 522, 527, 1026
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.