Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004704

Physical Location & Seq

Genomic Coordinates Reverse (-)

11256399 .. 11258660

Gene Structure 2262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTCTTCCATAGGCTATCAAGATTAGGTTCTCGCATTGTTAAAGAGCTCCCAAGAGAGAGACATTTGTCAATGTGTGGAAAGAGGATTCTTCAAAGGTCTTATGGCCAGTATCTTCAATCTTCGCCAATGCTGCAAAGGCAAACTAGGAGTTTTAAGGAAGCATTATTCTCGAATAATCATAAGTTTTGTACATCTTTCAGCACTACCTCTGAGAAAGGTGGCGAAAAAACAGAAAAGATAAACGTTACCTTTGTTGATAAAGATGGAGAGGAAATTCATATCAAGGTTCCAGTAGGAATGAACATCCTTGAAGCTGCTCATGAAAATGATATAGAACTCGAAGGGGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGCCATGTGATTGTTATGGACACCAAATACTACAACAAACTCGAAGAACCAACAGATGAAGAGAATGATATGCTAGATCTCGCTTTCGGGTTAACAGCAACGTCGCGATTGGGATGTCAAGTCATCGCAAAACCAGAGCTAGATGGAGTACGCCTAGCCATTCCTTCAGCTACTAGAAATTTTGCGGTTGATGGGTTTGTTCCAAAACCTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009856 GO:0009987 GO:0022414 GO:0022900 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

197

Amino Acids

22.12

Weight (kDa)

6.39

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	87 - 170	9.9e-13	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21090 AT4G21090 AT4G21090
fragaria_vesca	FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710
malus_domestica	MD12G1000100.v1.1 MD14G1000700.v1.1
prunus_persica	Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1
pyrus_communis	pycom12g00020
rosa_chinensis	RchiOBHm_Chr4g0406961 RchiOBHm_Chr6g0270801
rosa_laevigata	RLG00000008745
rosa_multiflora	Rmu_sc0000600.1_g000021 Rmu_sc0000642.1_g000023
rosa_roxburghii	Rroxscaffold_5G00351710
rosa_rugosa	Rorug04G0075800 Rorug04G0075800
rosa_samantha	Rh4AG141700 Rh4BG138800 Rh4CG148500 Rh4DG135800 Rh6AG176000 Rh6BG179200
rosa_wichuraiana	Rw4G011540 Rw6G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	386
AccII	CGCG	1 cut(s)	484
AciI	CCGC	1 cut(s)	563
AclI	AACGTT	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	276, 556
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	2 cut(s)	193, 528
AgsI	TTSAA	4 cut(s)	95, 119, 314, 375
AluBI	AGCT	4 cut(s)	49, 317, 517, 548
AluI	AGCT	4 cut(s)	49, 317, 517, 548
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	133, 317
ApoI	RAATTY	2 cut(s)	276, 556
BalI	TGGCCA	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	120, 304
BccI	CCATC	3 cut(s)	260, 515, 563
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	7 cut(s)	147, 365, 452, 518, 533, 552, 592
BfuAI	ACCTGC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	2 cut(s)	134, 318
BlsI	GCNGC	2 cut(s)	135, 319
BmiI	GGNNCC	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	109, 293
BseGI	GGATG	2 cut(s)	306, 497
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	109, 293
BseXI	GCAGC	2 cut(s)	120, 304
Bsh1236I	CGCG	1 cut(s)	484
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	454
Bsp68I	TCGCGA	1 cut(s)	484
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	291
BspMI	ACCTGC	1 cut(s)	386
BsrGI	TGTACA	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	109, 293
BssMI	GATC	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	306, 497
BstFNI	CGCG	1 cut(s)	484
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 139
BstNSI	RCATGY	1 cut(s)	354
BstPAI	GACNNNNGTC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	120, 304
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	306, 497
BtuMI	TCGCGA	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	386
CciI	TCATGA	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	192, 527
CviAII	CATG	3 cut(s)	323, 351, 383
CviJI	RGCY	7 cut(s)	16, 49, 108, 317, 517, 536, 548
CviKI_1	RGCY	7 cut(s)	16, 49, 108, 317, 517, 536, 548
CviQI	GTAC	2 cut(s)	192, 527
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	3 cut(s)	326, 354, 386
FatI	CATG	3 cut(s)	322, 350, 382
Fnu4HI	GCNGC	2 cut(s)	134, 318
FokI	GGATG	2 cut(s)	293, 504
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	134, 318
FspBI	CTAG	7 cut(s)	147, 365, 452, 518, 533, 552, 592
GluI	GCNGC	2 cut(s)	134, 318
HaeIII	GGCC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	326, 354, 386
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	88
HpaI	GTTAAC	1 cut(s)	471
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	4 cut(s)	21, 172, 323, 483
Hpy8I	GTNNAC	1 cut(s)	471
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	3 cut(s)	338, 350, 552
HpyCH4IV	ACGT	2 cut(s)	246, 479
HpyCH4V	TGCA	1 cut(s)	136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 139
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	246, 479
Hsp92II	CATG	3 cut(s)	326, 354, 386
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	4 cut(s)	122, 306, 391, 525
Lsp1109I	GCAGC	2 cut(s)	120, 304
MaeI	CTAG	7 cut(s)	147, 365, 452, 518, 533, 552, 592
MaeII	ACGT	2 cut(s)	246, 479
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	5 cut(s)	83, 107, 114, 434, 449
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	51
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	276, 556
MluNI	TGGCCA	1 cut(s)	108
MnlI	CCTC	3 cut(s)	78, 220, 265
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	3 cut(s)	42, 156, 470
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	108
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	133, 139
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	326, 354, 386
NlaIV	GGNNCC	1 cut(s)	291
NruI	TCGCGA	1 cut(s)	484
NspI	RCATGY	1 cut(s)	354
PagI	TCATGA	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	135, 319
PshAI	GACNNNNGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	454
RruI	TCGCGA	1 cut(s)	484
RsaI	GTAC	2 cut(s)	193, 528
RsaNI	GTAC	2 cut(s)	192, 527
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	42, 156, 470
SatI	GCNGC	2 cut(s)	134, 318
Sau3AI	GATC	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	276, 556
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	7 cut(s)	147, 365, 452, 518, 533, 552, 592
SstI	GAGCTC	1 cut(s)	51
TaiI	ACGT	2 cut(s)	249, 482
TaqI	TCGA	3 cut(s)	173, 342, 420
TasI	AATT	2 cut(s)	276, 556
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	42, 156, 470
Tru9I	TTAA	3 cut(s)	42, 156, 470
TseI	GCWGC	2 cut(s)	133, 317
TspDTI	ATGAA	4 cut(s)	269, 317, 339, 450
XapI	RAATTY	2 cut(s)	276, 556
XceI	RCATGY	1 cut(s)	354
XspI	CTAG	7 cut(s)	147, 365, 452, 518, 533, 552, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.