Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004704

Physical Location & Seq

Genomic Coordinates Forward (+)

32739587 .. 32760793

Gene Structure 21207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG148500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTTTATTCACAACAATCTGCAGGCAAATCCATCAGTACACCAACATATGCAACTCGTTCTTTCAGCCAATTCTTGCAACCTCGGTATGATCAACAGTCCGGGACCAAGTTGTTCAGGGGAGCCATCTTTCAGAAGCATAATCATTTTTCTACCACCACTGCCAGCTCTTCAGATCAAGGGACTGAGCAGAAAGAAACGATATCTGTGACCTTTGTTGACAAGGATGGAGACGAAAAACATATAAAGGTTCCAATTGGGATGTCTATGCTAGAAGCTGCTCATCAAAATGATATAGAACTTGAAGGAGCCTGTGAAGGTTCACTTGCCTGTTCAACATGTCATGTGATTTTAATGGACGTGGAATATTACAACAAATTAGAAGACCCAACTGATGAGGAAAATGATATGTTGGACTTGGCATTTGGACTTACAGAAACGTCTCGTCTGGGTTGCCAAGTCATTGCAAGCCCTGAACTTGATGGAGTTTGTTTAGCTATTCCTGCTGCCACCCGAAATTTTGCTGTTGATGGCTATGTACCAAAACCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009856 GO:0009987 GO:0022414 GO:0022900 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

184

Amino Acids

20.21

Weight (kDa)

4.77

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	74 - 156	3.6e-11	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21090 AT4G21090 AT4G21090
fragaria_vesca	FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710
malus_domestica	MD12G1000100.v1.1 MD14G1000700.v1.1
prunus_persica	Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1
pyrus_communis	pycom12g00020
rosa_chinensis	RchiOBHm_Chr4g0406961 RchiOBHm_Chr6g0270801
rosa_laevigata	RLG00000008745
rosa_multiflora	Rmu_sc0000600.1_g000021 Rmu_sc0000642.1_g000023
rosa_roxburghii	Rroxscaffold_5G00351710
rosa_rugosa	Rorug04G0075800 Rorug04G0075800
rosa_samantha	Rh4AG141700 Rh4BG138800 Rh4CG148500 Rh4DG135800 Rh6AG176000 Rh6BG179200
rosa_wichuraiana	Rw4G011540 Rw6G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	2 cut(s)	40, 540
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	305, 336
AjiI	CACGTC	1 cut(s)	361
AluBI	AGCT	3 cut(s)	168, 278, 497
AluI	AGCT	3 cut(s)	168, 278, 497
Alw26I	GTCTC	2 cut(s)	225, 447
ApeKI	GCWGC	2 cut(s)	278, 506
ApoI	RAATTY	1 cut(s)	517
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	265, 493
BccI	CCATC	5 cut(s)	41, 134, 221, 476, 524
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	225, 447
BfaI	CTAG	2 cut(s)	272, 553
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	279, 507
BlsI	GCNGC	2 cut(s)	280, 508
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	4 cut(s)	106, 124, 252, 310
BmrFI	CCNGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	2 cut(s)	232, 267
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	265, 493
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	118, 196
BsmAI	GTCTC	2 cut(s)	225, 447
BsmBI	CGTCTC	2 cut(s)	225, 447
BsmFI	GGGAC	2 cut(s)	118, 196
Bsp143I	GATC	2 cut(s)	91, 175
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	4 cut(s)	106, 124, 252, 310
BspMAI	CTGCAG	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	91, 175
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	3 cut(s)	25, 166, 469
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	232, 267
BstKTI	GATC	2 cut(s)	94, 178
BstMAI	GTCTC	2 cut(s)	225, 447
BstMBI	GATC	2 cut(s)	91, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	265, 493
BstV2I	GAAGAC	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	232, 267
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	3 cut(s)	25, 166, 469
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	39, 539
CviAII	CATG	2 cut(s)	339, 344
CviJI	RGCY	8 cut(s)	69, 125, 168, 278, 311, 471, 497, 534
CviKI_1	RGCY	8 cut(s)	69, 125, 168, 278, 311, 471, 497, 534
CviQI	GTAC	2 cut(s)	39, 539
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	93, 177
DpnII	GATC	2 cut(s)	91, 175
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	204
Esp3I	CGTCTC	2 cut(s)	225, 447
FaeI	CATG	2 cut(s)	342, 347
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	118, 196
FatI	CATG	2 cut(s)	338, 343
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	279, 507
FokI	GGATG	2 cut(s)	239, 274
Fsp4HI	GCNGC	2 cut(s)	279, 507
FspBI	CTAG	2 cut(s)	272, 553
GluI	GCNGC	2 cut(s)	279, 507
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	342, 347
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	41, 220, 323
Hpy188I	TCNGA	2 cut(s)	135, 175
Hpy8I	GTNNAC	3 cut(s)	41, 220, 323
HpyAV	CCTTC	2 cut(s)	299, 311
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	2 cut(s)	360, 440
HpyCH4V	TGCA	4 cut(s)	23, 53, 79, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	360, 440
Hsp92II	CATG	2 cut(s)	342, 347
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 175
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	122, 308
LpnPI	CCDG	9 cut(s)	9, 103, 115, 178, 325, 343, 434, 486, 516
Lsp1109I	GCAGC	2 cut(s)	265, 493
MaeI	CTAG	2 cut(s)	272, 553
MaeII	ACGT	2 cut(s)	360, 440
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	93, 177
MboI	GATC	2 cut(s)	91, 175
MboII	GAAGA	2 cut(s)	162, 395
MfeI	CAATTG	1 cut(s)	255
MluCI	AATT	4 cut(s)	71, 255, 377, 517
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	2 cut(s)	93, 391
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	103
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	2 cut(s)	91, 175
NlaIII	CATG	2 cut(s)	342, 347
NlaIV	GGNNCC	4 cut(s)	106, 124, 252, 310
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	342
PciI	ACATGT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	280, 508
PscI	ACATGT	1 cut(s)	338
PspN4I	GGNNCC	4 cut(s)	106, 124, 252, 310
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	40, 540
RsaNI	GTAC	2 cut(s)	39, 539
RseI	CAYNNNNRTG	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	2 cut(s)	279, 507
Sau3AI	GATC	2 cut(s)	91, 175
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	9 cut(s)	85, 170, 215, 252, 280, 322, 363, 443, 499
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	4 cut(s)	71, 255, 377, 517
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	2 cut(s)	272, 553
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	2 cut(s)	363, 443
TasI	AATT	4 cut(s)	71, 255, 377, 517
TatI	WGTACW	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	278, 506
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	2 cut(s)	272, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.