Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000642.1

Orthogroup ID

OG0004704

Physical Location & Seq

Genomic Coordinates Forward (+)

178221 .. 180193

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000642.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgttgggctctcgggcttcaagaattggacttttgatactgaaacagcttactagaggaggcaaatccattagtagaccaacatatgcaagtcgttctttcagccaattcttgcaacctcggtatgatcaacagtccggaaccaacttgttcaggggagccatctttcagaagcatcatcatttttctaccaccactgccagctcttcagatcaagggactgagcagaaagaaacgatatctgtgacctttgttgacaaggatggagacgaaaaacatataaaggttccaattggaatgtctatgctagaagctgctcatcaaaatgatatagaccttgaaggagcctgtgaaggttcacttgcctgttcaacatgtcatgtgattgtaatggacatggagtattacaacaaattagaagacccaactgatgaggaaaatgatatgttggacttggcatttggacttacagaaacgtctcgtctgggttgccaagtcattgcaagccctgaacttgatggagttcgtttagctattcctgctgccacccgaaactttgctgttgatggctatgtaccaaaaccacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009856 GO:0009987 GO:0022414 GO:0022900 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

196

Amino Acids

21.57

Weight (kDa)

5.45

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21090 AT4G21090 AT4G21090
fragaria_vesca	FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710
malus_domestica	MD12G1000100.v1.1 MD14G1000700.v1.1
prunus_persica	Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1
pyrus_communis	pycom12g00020
rosa_chinensis	RchiOBHm_Chr4g0406961 RchiOBHm_Chr6g0270801
rosa_laevigata	RLG00000008745
rosa_multiflora	Rmu_sc0000600.1_g000021 Rmu_sc0000642.1_g000023
rosa_roxburghii	Rroxscaffold_5G00351710
rosa_rugosa	Rorug04G0075800 Rorug04G0075800
rosa_samantha	Rh4AG141700 Rh4BG138800 Rh4CG148500 Rh4DG135800 Rh6AG176000 Rh6BG179200
rosa_wichuraiana	Rw4G011540 Rw6G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	576
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	3 cut(s)	21, 341, 372
AluBI	AGCT	4 cut(s)	49, 204, 314, 533
AluI	AGCT	4 cut(s)	49, 204, 314, 533
Alw26I	GTCTC	2 cut(s)	261, 483
Ama87I	CYCGRG	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	314, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AvaI	CYCGRG	1 cut(s)	12
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	301, 529
BccI	CCATC	4 cut(s)	170, 257, 512, 560
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	261, 483
BfaI	CTAG	3 cut(s)	54, 308, 589
BisI	GCNGC	2 cut(s)	315, 543
BlsI	GCNGC	2 cut(s)	316, 544
BmeT110I	CYCGRG	1 cut(s)	12
BmiI	GGNNCC	4 cut(s)	142, 160, 288, 346
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	301, 529
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	261, 483
BsmBI	CGTCTC	2 cut(s)	261, 483
BsmFI	GGGAC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	127, 211
BspCNI	CTCAG	1 cut(s)	214
BspEI	TCCGGA	1 cut(s)	137
BspLI	GGNNCC	4 cut(s)	142, 160, 288, 346
BspQI	GCTCTTC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	127, 211
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	202, 505
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	2 cut(s)	130, 214
BstMAI	GTCTC	2 cut(s)	261, 483
BstMBI	GATC	2 cut(s)	127, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	301, 529
BstV2I	GAAGAC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	202, 505
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	3 cut(s)	375, 380, 397
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	129, 213
DpnII	GATC	2 cut(s)	127, 211
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	11
Esp3I	CGTCTC	2 cut(s)	261, 483
FaeI	CATG	3 cut(s)	378, 383, 400
FalI	AAGNNNNNCTT	4 cut(s)	82, 114, 345, 377
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	3 cut(s)	374, 379, 396
FauNDI	CATATG	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	315, 543
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	315, 543
FspBI	CTAG	3 cut(s)	54, 308, 589
GluI	GCNGC	2 cut(s)	315, 543
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	3 cut(s)	378, 383, 400
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	3 cut(s)	77, 256, 359
Hpy188I	TCNGA	2 cut(s)	171, 211
Hpy188III	TCNNGA	2 cut(s)	21, 138
Hpy8I	GTNNAC	3 cut(s)	77, 256, 359
HpyAV	CCTTC	2 cut(s)	335, 347
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	3 cut(s)	89, 115, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	3 cut(s)	378, 383, 400
Kpn2I	TCCGGA	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 211
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	158, 344
LpnPI	CCDG	8 cut(s)	139, 151, 214, 361, 379, 470, 522, 552
Lsp1109I	GCAGC	2 cut(s)	301, 529
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	3 cut(s)	54, 308, 589
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	129, 213
MboI	GATC	2 cut(s)	127, 211
MboII	GAAGA	2 cut(s)	198, 431
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	24, 107, 291, 413
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	4 cut(s)	50, 53, 129, 427
MroI	TCCGGA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeI	CATATG	1 cut(s)	85
NdeII	GATC	2 cut(s)	127, 211
NlaIII	CATG	3 cut(s)	378, 383, 400
NlaIV	GGNNCC	4 cut(s)	142, 160, 288, 346
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	378
PciI	ACATGT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	316, 544
PscI	ACATGT	1 cut(s)	374
PspN4I	GGNNCC	4 cut(s)	142, 160, 288, 346
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	211
SatI	GCNGC	2 cut(s)	315, 543
Sau3AI	GATC	2 cut(s)	127, 211
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	4 cut(s)	24, 107, 291, 413
SspMI	CTAG	3 cut(s)	54, 308, 589
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	479
TasI	AATT	4 cut(s)	24, 107, 291, 413
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	314, 542
Tsp45I	GTSAC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	202
XceI	RCATGY	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	3 cut(s)	54, 308, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.