Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004704

Physical Location & Seq

Genomic Coordinates Reverse (-)

14427199 .. 14430060

Gene Structure 2862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10710.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGGGCTTTCGGGCTTCAAGAATCGGACTTTTGATACTTAAACAGCTTACCAGAGACAAATCCATTTGTACACCCACATATGCCACTCGTTCTTTCACTCAATTCTTGCAACCTCTGTCTGGGACAAGGTTATTCAGGGGAGCCATCTTTCAGAAGCATCATCATTTTTCTACCACTACTGCCAGCACTTCAGACCAAGGGACTGAGCAGAAAGAAACGATATCTGTGACCTTTGTAGACAAGGATGGAGACGAAAGACATATCAAGGTTCCAATTGGAATGTCTATGCTAGAAGCTGCTCATGAAAATGATATAGAACTTGAAGGAGCCTGTGAAGGTTCACTTGCCTGCTCAACATGTCATGTGATTGTAATGGACATGGAGTATTACAACAAATTAGAAGACCCAACTGATGAGGAAAATGATATGTTGGACTTGGCATTTGGGCTTACAGAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0008150 GO:0008152 GO:0009856 GO:0009987 GO:0022414 GO:0022900 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048856 GO:0048868 GO:0051704 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fer2

Protein Analysis

155

Amino Acids

17.24

Weight (kDa)

4.94

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	85 - 167	6.4e-12	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21090 AT4G21090 AT4G21090
fragaria_vesca	FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710
malus_domestica	MD12G1000100.v1.1 MD14G1000700.v1.1
prunus_persica	Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1
pyrus_communis	pycom12g00020
rosa_chinensis	RchiOBHm_Chr4g0406961 RchiOBHm_Chr6g0270801
rosa_laevigata	RLG00000008745
rosa_multiflora	Rmu_sc0000600.1_g000021 Rmu_sc0000642.1_g000023
rosa_roxburghii	Rroxscaffold_5G00351710
rosa_rugosa	Rorug04G0075800 Rorug04G0075800
rosa_samantha	Rh4AG141700 Rh4BG138800 Rh4CG148500 Rh4DG135800 Rh6AG176000 Rh6BG179200
rosa_wichuraiana	Rw4G011540 Rw6G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	21, 326
AluBI	AGCT	2 cut(s)	49, 299
AluI	AGCT	2 cut(s)	49, 299
Alw26I	GTCTC	2 cut(s)	51, 246
ApeKI	GCWGC	1 cut(s)	299
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	155, 242
BcoDI	GTCTC	2 cut(s)	51, 246
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmiI	GGNNCC	3 cut(s)	145, 273, 331
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	286
BslFI	GGGAC	2 cut(s)	139, 217
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	2 cut(s)	51, 246
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	139, 217
Bsp1407I	TGTACA	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	145, 273, 331
BsrGI	TGTACA	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	187, 352
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	253
BstMAI	GTCTC	2 cut(s)	51, 246
BstNSI	RCATGY	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	187, 352
CciI	TCATGA	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	305, 360, 365, 382
CviJI	RGCY	7 cut(s)	9, 17, 49, 146, 299, 332, 451
CviKI_1	RGCY	7 cut(s)	9, 17, 49, 146, 299, 332, 451
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	199
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	4 cut(s)	308, 363, 368, 385
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	2 cut(s)	139, 217
FatI	CATG	4 cut(s)	304, 359, 364, 381
FauNDI	CATATG	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	300
Hin1II	CATG	4 cut(s)	308, 363, 368, 385
HinfI	GANTC	1 cut(s)	24
Hpy166II	GTNNAC	3 cut(s)	74, 241, 344
Hpy188I	TCNGA	3 cut(s)	29, 156, 196
Hpy188III	TCNNGA	2 cut(s)	21, 305
Hpy8I	GTNNAC	3 cut(s)	74, 241, 344
HpyAV	CCTTC	2 cut(s)	320, 332
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	308, 363, 368, 385
LmnI	GCTCC	2 cut(s)	143, 329
LpnPI	CCDG	6 cut(s)	67, 108, 124, 199, 346, 364
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	416
MfeI	CAATTG	1 cut(s)	276
MluCI	AATT	3 cut(s)	104, 276, 398
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	126, 412
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	82
NlaIII	CATG	4 cut(s)	308, 363, 368, 385
NlaIV	GGNNCC	3 cut(s)	145, 273, 331
NmuCI	GTSAC	1 cut(s)	229
NspI	RCATGY	1 cut(s)	363
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	301
PscI	ACATGT	1 cut(s)	359
PspN4I	GGNNCC	3 cut(s)	145, 273, 331
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	300
SetI	ASST	8 cut(s)	51, 118, 134, 236, 273, 301, 343, 464
SfaNI	GCATC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	3 cut(s)	104, 276, 398
SspMI	CTAG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	464
TasI	AATT	3 cut(s)	104, 276, 398
TatI	WGTACW	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	321
XceI	RCATGY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.