Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004704

Physical Location & Seq

Genomic Coordinates Forward (+)

35994386 .. 35997157

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTGTTTTGTATCGATGGAGAGCAGGTCACCTTTTCAACCATCAGATTTCAGATTGGATATCCAGCGGTCCATATTATTATGCTGACACGTGCCCCAAGCATGGCAAGCTCGCCCGGAGCATTGTAGAATTTTCGGCATTAACAAAACAAAGCTGGGAGTGCCTCAAGAGAGAAACCCAGCAGCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGATTTGAATACGGTAGCTGCCGGAGCTCTTCCTGCCGCCACTCAATTTCGACACCAATCCAGTCCAGAAATCTAATGCTTTTCTTACCCATGCAGGAGCCTGTGAAGGTTCACTTGCCTGTTCAACATGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.83

Weight (kDa)

9.42

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004704)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21090 AT4G21090 AT4G21090
fragaria_vesca	FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710 FvH4_4g10710
malus_domestica	MD12G1000100.v1.1 MD14G1000700.v1.1
prunus_persica	Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1 Prupe.7G000600_v2.0.a1
pyrus_communis	pycom12g00020
rosa_chinensis	RchiOBHm_Chr4g0406961 RchiOBHm_Chr6g0270801
rosa_laevigata	RLG00000008745
rosa_multiflora	Rmu_sc0000600.1_g000021 Rmu_sc0000642.1_g000023
rosa_roxburghii	Rroxscaffold_5G00351710
rosa_rugosa	Rorug04G0075800 Rorug04G0075800
rosa_samantha	Rh4AG141700 Rh4BG138800 Rh4CG148500 Rh4DG135800 Rh6AG176000 Rh6BG179200
rosa_wichuraiana	Rw4G011540 Rw6G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AciI	CCGC	2 cut(s)	69, 259
AcsI	RAATTY	1 cut(s)	131
AcvI	CACGTG	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	90, 349
AgsI	TTSAA	3 cut(s)	40, 230, 347
AluBI	AGCT	5 cut(s)	112, 156, 190, 240, 249
AluI	AGCT	5 cut(s)	112, 156, 190, 240, 249
Alw21I	GWGCWC	1 cut(s)	251
ApeKI	GCWGC	3 cut(s)	184, 187, 240
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	251
BbrPI	CACGTG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	3 cut(s)	196, 199, 227
BccI	CCATC	2 cut(s)	12, 51
BcnI	CCSGG	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	4 cut(s)	185, 188, 241, 259
BlsI	GCNGC	4 cut(s)	186, 189, 242, 260
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	196, 199, 227
BseYI	CCCAGC	2 cut(s)	156, 180
BshVI	ATCGAT	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	118, 244
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	98, 251
BspACI	CCGC	2 cut(s)	69, 259
BspCNI	CTCAG	1 cut(s)	234
BspDI	ATCGAT	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	110, 114
BstDEI	CTNAG	1 cut(s)	221
BstEII	GGTNACC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 162, 246, 255
BstNSI	RCATGY	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	196, 199, 227
Bsu15I	ATCGAT	1 cut(s)	16
BsuTUI	ATCGAT	1 cut(s)	16
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	110, 114
Cfr13I	GGNCC	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	16
CviAII	CATG	4 cut(s)	104, 313, 350, 355
CviJI	RGCY	6 cut(s)	112, 156, 190, 240, 249, 322
CviKI_1	RGCY	6 cut(s)	112, 156, 190, 240, 249, 322
DdeI	CTNAG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	249
Eco24I	GRGCYC	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	71
Eco53kI	GAGCTC	1 cut(s)	249
Eco72I	CACGTG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	249
EcoO65I	GGTNACC	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	4 cut(s)	107, 316, 353, 358
FaiI	YATR	6 cut(s)	76, 84, 105, 314, 351, 356
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	4 cut(s)	103, 312, 349, 354
Fnu4HI	GCNGC	4 cut(s)	185, 188, 241, 259
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	185, 188, 241, 259
GluI	GCNGC	4 cut(s)	185, 188, 241, 259
GsaI	CCCAGC	2 cut(s)	160, 184
HapII	CCGG	2 cut(s)	118, 244
Hin1II	CATG	4 cut(s)	107, 316, 353, 358
HpaII	CCGG	2 cut(s)	118, 244
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	48, 55, 224
Hpy188III	TCNNGA	2 cut(s)	169, 288
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 162, 246, 255
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	107, 316, 353, 358
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	3 cut(s)	120, 246, 319
Lsp1109I	GCAGC	3 cut(s)	196, 199, 227
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	29
MboII	GAAGA	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	98, 251
MluCI	AATT	2 cut(s)	131, 267
MnlI	CCTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	2 cut(s)	118, 244
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	109, 162, 246, 255
NciI	CCSGG	1 cut(s)	118
NlaIII	CATG	4 cut(s)	107, 316, 353, 358
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	353
PciI	ACATGT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	186, 189, 242, 260
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	93
PscI	ACATGT	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	29
PspFI	CCCAGC	2 cut(s)	156, 180
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	4 cut(s)	185, 188, 241, 259
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	98, 251
SetI	ASST	9 cut(s)	31, 36, 95, 114, 158, 192, 242, 251, 333
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	131, 267
SsiI	CCGC	2 cut(s)	69, 259
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	16, 272
TasI	AATT	2 cut(s)	131, 267
TauI	GCSGC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	3 cut(s)	184, 187, 240
Tsp45I	GTSAC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.