Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Reverse (-)

11418199 .. 11419769

Gene Structure 1571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAAGGTCACCTTGTTGCGAGAAGAACGGACTCAAGAAAGGGCCTTGGACATCTGAAGAAGACCAGAAGCTTGTTGACTATATCCAGAAACATGGTTATGGTAACTGGAGAACCCTCCCCAAAAATGCCGGTTTGCAAAGATGTGGCAAAAGTTGTAGGTTAAGGTGGACTAATTATCTCCGACCAGATATAAAGCGAGGAAGGTTCTCTTTTGAGGAAGAAGAAACCATTATTCAGCTTCATAGCTTCTTAGGAAACAAGTGGTCTGCGATTGCGGCGCGTTTACCAGGAAGAACAGATAATGAGATCAAGAACTTTTGGAACACTCATATAAGAAAGAAGCTACTTAGAATGGGGATTGATCCAGTGACTCACAGTCCACGACTCGATCTCCTCGATATCTCATCCATCTTAGCTTCATCTCTATACAATTCATCTTCACATCACATGAACATGTCAAGACTCATGATGGATACTAATCGTCGTCATCACCAGCAACATCCATTGGTTAACCCCGAGATACTCAAGCTCGCTACCTCTCTCTTCTCTCAAAATCAAAACCAAAACCTTGTGGTGGATCATGACTCGAGAACTCAAGAGAAGCAAACAGTTTATAGCCAAACCGGAGTAAACCAATACCAAACCAACCAATATTTCGAGAACACGATTACTCAAGAACTCCAATCTTCCATGCCACCATTCCCCAATGAAGCTCGTCAGTTTAACAACATGGATCATCACTTCAATGGTTTTGGAGAACAAAATCTTGTTTCAACTTCTACTACGTCAGTCCAAGATTGCTATAATCCGTCATTCAACGATTATTCAAGTTCAAATTTTGTCTTGGATCCTTCTTATTCGGATCAGAGCTTCAACTTCGCAAATTCGGTCTTAAACACGCCATCCTCGAGCCCGAGCCCGACTACGTTAAACTCGAGTTACATCAATAGTAGCAGTTGCAGCACTGAGGATGAAATAGAAAGCTATTGCAGTAATCTCATGAAGTTTGATATTCCCGATTTCTTGGACGTTAATGGTTTTATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

350

Amino Acids

40.17

Weight (kDa)

6.46

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	9.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 115	3.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	283
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	6 cut(s)	359, 588, 744, 845, 858, 873
AcsI	RAATTY	2 cut(s)	838, 886
AcuI	CTGAAG	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	577
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	6 cut(s)	748, 777, 820, 831, 837, 877
AhdI	GACNNNNNGTC	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	9 cut(s)	73, 241, 249, 346, 419, 532, 716, 873, 987
AluI	AGCT	9 cut(s)	73, 241, 249, 346, 419, 532, 716, 873, 987
AlwI	GGATC	6 cut(s)	359, 588, 744, 845, 858, 873
Ama87I	CYCGRG	5 cut(s)	518, 589, 910, 916, 937
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	963
ApoI	RAATTY	2 cut(s)	838, 886
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	3, 485
AvaI	CYCGRG	5 cut(s)	518, 589, 910, 916, 937
BamHI	GGATCC	1 cut(s)	850
BanII	GRGCYC	2 cut(s)	917, 923
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	975
BccI	CCATC	3 cut(s)	419, 466, 913
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	2 cut(s)	279, 964
BlsI	GCNGC	2 cut(s)	280, 965
Bme1390I	CCNGG	1 cut(s)	291
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmeT110I	CYCGRG	5 cut(s)	518, 589, 910, 916, 937
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	852
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	4 cut(s)	20, 512, 582, 660
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	113, 368
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	407, 502, 905, 979
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	2 cut(s)	113, 368
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	46
BsiHKCI	CYCGRG	5 cut(s)	518, 589, 910, 916, 937
BsiSI	CCGG	2 cut(s)	132, 627
BslI	CCNNNNNNNGG	1 cut(s)	577
BsnI	GGCC	1 cut(s)	46
BsoBI	CYCGRG	5 cut(s)	518, 589, 910, 916, 937
Bsp1286I	GDGCHC	2 cut(s)	917, 923
Bsp143I	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	961
BspFNI	CGCG	1 cut(s)	283
BspHI	TCATGA	3 cut(s)	468, 583, 1002
BspLI	GGNNCC	1 cut(s)	852
BspPI	GGATC	6 cut(s)	359, 588, 744, 845, 858, 873
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	113, 368
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	380, 613
Bst6I	CTCTTC	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	4 cut(s)	253, 350, 415, 969
BstEII	GGTNACC	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	407, 502, 905, 979
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	7 cut(s)	312, 367, 394, 583, 739, 853, 868
BstMBI	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 963
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	460
BstPI	GGTNACC	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	975
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	850
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	850
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	407, 502, 905, 979
BtsIMutI	CAGTG	2 cut(s)	375, 966
Cac8I	GCNNGC	1 cut(s)	534
CciI	TCATGA	3 cut(s)	468, 583, 1002
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	8 cut(s)	95, 451, 457, 469, 584, 694, 733, 1003
DdeI	CTNAG	4 cut(s)	253, 350, 415, 969
DpnI	GATC	7 cut(s)	311, 366, 393, 582, 738, 852, 867
DpnII	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
DriI	GACNNNNNGTC	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	551
Eam1105I	GACNNNNNGTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	917, 923
Eco32I	GATATC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	5 cut(s)	518, 589, 910, 916, 937
Eco91I	GGTNACC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	917, 923
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	8 cut(s)	98, 454, 460, 472, 587, 697, 736, 1006
FalI	AAGNNNNNCTT	3 cut(s)	30, 196, 228
FatI	CATG	8 cut(s)	94, 450, 456, 468, 583, 693, 732, 1002
Fnu4HI	GCNGC	2 cut(s)	279, 964
FokI	GGATG	4 cut(s)	394, 489, 892, 986
FriOI	GRGCYC	2 cut(s)	917, 923
Fsp4HI	GCNGC	2 cut(s)	279, 964
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	279, 964
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	2 cut(s)	132, 627
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	8 cut(s)	98, 454, 460, 472, 587, 697, 736, 1006
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	2 cut(s)	79, 514
HindII	GTYRAC	2 cut(s)	79, 514
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	5 cut(s)	33, 373, 387, 465, 587
HpaI	GTTAAC	1 cut(s)	514
HpaII	CCGG	2 cut(s)	132, 627
HphI	GGTGA	2 cut(s)	3, 485
Hpy166II	GTNNAC	6 cut(s)	79, 171, 287, 383, 514, 634
Hpy188I	TCNGA	4 cut(s)	58, 185, 865, 870
Hpy8I	GTNNAC	6 cut(s)	79, 171, 287, 383, 514, 634
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	2 cut(s)	198, 864
HpyCH4III	ACNGT	2 cut(s)	380, 613
HpyCH4IV	ACGT	3 cut(s)	788, 929, 1032
HpyCH4V	TGCA	3 cut(s)	139, 963, 993
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 963
HpyF3I	CTNAG	4 cut(s)	253, 350, 415, 969
HpySE526I	ACGT	3 cut(s)	788, 929, 1032
Hsp92II	CATG	8 cut(s)	98, 454, 460, 472, 587, 697, 736, 1006
HspAI	GCGC	1 cut(s)	281
KspAI	GTTAAC	1 cut(s)	514
Kzo9I	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
Lsp1109I	GCAGC	1 cut(s)	975
MaeII	ACGT	3 cut(s)	788, 929, 1032
MaeIII	GTNAC	4 cut(s)	9, 104, 370, 941
MalI	GATC	7 cut(s)	311, 366, 393, 582, 738, 852, 867
MboI	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
MboII	GAAGA	9 cut(s)	37, 71, 74, 233, 236, 306, 432, 538, 681
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	2 cut(s)	917, 923
MluCI	AATT	4 cut(s)	175, 433, 838, 886
MlyI	GAGTC	5 cut(s)	27, 367, 381, 459, 581
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	7 cut(s)	128, 194, 211, 407, 550, 919, 964
MseI	TTAA	6 cut(s)	164, 513, 726, 896, 932, 1035
MslI	CAYNNNNRTG	3 cut(s)	99, 455, 747
MspI	CCGG	2 cut(s)	132, 627
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	278, 963
NdeII	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
NlaIII	CATG	8 cut(s)	98, 454, 460, 472, 587, 697, 736, 1006
NlaIV	GGNNCC	1 cut(s)	852
NmuCI	GTSAC	2 cut(s)	9, 370
NspI	RCATGY	1 cut(s)	460
PaeR7I	CTCGAG	3 cut(s)	589, 910, 937
PagI	TCATGA	3 cut(s)	468, 583, 1002
PciI	ACATGT	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	3 cut(s)	396, 908, 935
PkrI	GCNGC	2 cut(s)	280, 965
PleI	GAGTC	5 cut(s)	27, 367, 381, 459, 581
PpsI	GAGTC	5 cut(s)	27, 367, 381, 459, 581
PscI	ACATGT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	852
PspPI	GGNCC	1 cut(s)	44
PspXI	VCTCGAGB	2 cut(s)	910, 937
PsuI	RGATCY	1 cut(s)	850
RseI	CAYNNNNRTG	3 cut(s)	99, 455, 747
SaqAI	TTAA	6 cut(s)	164, 513, 726, 896, 932, 1035
SatI	GCNGC	2 cut(s)	279, 964
Sau3AI	GATC	7 cut(s)	309, 364, 391, 580, 736, 850, 865
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	5 cut(s)	27, 367, 381, 459, 581
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	917, 923
Sfr274I	CTCGAG	3 cut(s)	589, 910, 937
SlaI	CTCGAG	3 cut(s)	589, 910, 937
SmiMI	CAYNNNNRTG	3 cut(s)	99, 455, 747
SmlI	CTYRAG	7 cut(s)	35, 527, 589, 597, 675, 910, 937
SmoI	CTYRAG	7 cut(s)	35, 527, 589, 597, 675, 910, 937
Sse9I	AATT	4 cut(s)	175, 433, 838, 886
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	1 cut(s)	656
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	380, 613
TaiI	ACGT	3 cut(s)	791, 932, 1035
TaqI	TCGA	6 cut(s)	390, 399, 590, 660, 911, 938
TaqII	GACCGA	1 cut(s)	880
TasI	AATT	4 cut(s)	175, 433, 838, 886
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	6 cut(s)	164, 513, 726, 896, 932, 1035
Tru9I	TTAA	6 cut(s)	164, 513, 726, 896, 932, 1035
TscAI	CASTG	2 cut(s)	375, 973
TseFI	GTSAC	2 cut(s)	9, 370
TseI	GCWGC	1 cut(s)	963
Tsp45I	GTSAC	2 cut(s)	9, 370
TspDTI	ATGAA	7 cut(s)	233, 411, 426, 467, 726, 990, 1019
TspGWI	ACGGA	2 cut(s)	45, 801
TspRI	CASTG	2 cut(s)	375, 973
XapI	RAATTY	2 cut(s)	838, 886
XceI	RCATGY	1 cut(s)	460
XhoI	CTCGAG	3 cut(s)	589, 910, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.