Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Forward (+)

30314297 .. 30315635

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30090.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCTCAAGAAAGGCCCGTGGACGCCGGAGGAGGATCAGAAACTCATGGATTATATTCAGAAACATGGTTATGGCAACTGGAGAACCCTCCCAAAGAATGCAGGGCTACAAAGATGCGGGAAGAGCTGCCGTCTCCGGTGGACAAACTATCTCCGACCGGACATCAAACGAGGTCGGTTTTCATTCGAAGAGGAGGAGACAATTATTCAACTCCATACAATATTGGGCAACAAATGGTCTGCTATTGCCGCTCGTTTGCCCGGAAGAACCGACAACGAAATTAAGAACTACTGGAACACCCACATTAGGAAGAGGCTTCTCCGAATGGGAATTGATCGCTGTCACCCACAGTCCCCGTCTTGATCTTCTCGACTTCTCATCCATTCTCTACAACTCATCTCATCACCACCATCAAATGAACAACTTTTCAAGGTTGCTTGGCCAACCAATTGGACTCAACCCTGAGCTACTAAGGCTAGCCACTTCTCTAATCCAATCCCGTAGAGAAAACAATAGTAACCAAAATTTCGTTCTTCAAAATGCTCAAGAAAATGATTACCACCAAATCTGCAACCCCCAAATCCAACCTCAACAACCAGTTCAAGACAACGTTCCATACCCTAATGAAGTTTCACAACTCATGCAGCAGCAGCCCAATGTAGAGTACCCATCAAGCCTAAGTGATTTTAGGTCACAAAAATCTCAACTCAATGAGTGGCAAAGTAATGTGGGGACTTCAAATTTTACGGAAGAGTATGTTGAGTTACCAAGTTTTGCATACTTTGGGTCTGAACAGCATCAAACTGTTTTGGACCTTTCGCCGGAGACTTCAAATTTTCACTCCAACAATAGCAACCAGAACTTCAGCTTCACTTCAGTTTTCTCGACGCCTTCTTCAAGCCCGACGACTTTGAATTCGAATTCGACAACGTATTTCAACAGCGGCACAGAGGACGAACGTGAAAGCTACTGTAGCAACATGTTAAAGTTTGGGATCCCAGACATCTTGGGTGTTAATGAATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

344

Amino Acids

39.03

Weight (kDa)

6.51

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	253
AciI	CCGC	3 cut(s)	119, 251, 945
AclI	AACGTT	1 cut(s)	612
AclWI	GGATC	3 cut(s)	44, 991, 1004
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	6 cut(s)	526, 742, 835, 916, 922, 1022
AcuI	CTGAAG	2 cut(s)	850, 861
AcyI	GRCGYC	2 cut(s)	25, 890
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	2 cut(s)	308, 823
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	9 cut(s)	211, 432, 539, 605, 741, 834, 900, 916, 940
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	4 cut(s)	128, 469, 870, 969
AluI	AGCT	4 cut(s)	128, 469, 870, 969
Alw26I	GTCTC	3 cut(s)	139, 193, 821
AlwI	GGATC	3 cut(s)	44, 991, 1004
AoxI	GGCC	3 cut(s)	3, 15, 442
ApeKI	GCWGC	4 cut(s)	128, 646, 649, 652
ApoI	RAATTY	6 cut(s)	526, 742, 835, 916, 922, 1022
ArsI	GACNNNNNNTTYG	2 cut(s)	901, 933
AspS9I	GGNCC	2 cut(s)	16, 814
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	337, 398
AsuII	TTCGAA	2 cut(s)	188, 920
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	444
BamHI	GGATCC	1 cut(s)	996
BbvI	GCAGC	4 cut(s)	115, 658, 661, 664
BccI	CCATC	2 cut(s)	420, 679
BceAI	ACGGC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	3 cut(s)	139, 193, 821
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	973
BisI	GCNGC	6 cut(s)	129, 251, 647, 650, 653, 946
BlsI	GCNGC	6 cut(s)	130, 252, 648, 651, 654, 947
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	814
BmgT120I	GGNCC	2 cut(s)	16, 814
BmiI	GGNNCC	1 cut(s)	998
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	2 cut(s)	106, 808
BmtI	GCTAGC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	2 cut(s)	188, 920
BpuEI	CTTGAG	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	2 cut(s)	25, 890
BsaJI	CCNNGG	1 cut(s)	19
BsaWI	WCCGGW	2 cut(s)	137, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 823
Bse1I	ACTGG	3 cut(s)	85, 298, 599
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	308, 823
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	85, 298, 599
BseRI	GAGGAG	3 cut(s)	46, 208, 211
BseXI	GCAGC	4 cut(s)	115, 658, 661, 664
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	5, 17, 444
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	5 cut(s)	28, 138, 160, 263, 824
BslFI	GGGAC	2 cut(s)	339, 748
BslI	CCNNNNNNNGG	2 cut(s)	308, 823
BsmAI	GTCTC	3 cut(s)	139, 193, 821
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	2 cut(s)	339, 748
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	5, 17, 444
Bsp119I	TTCGAA	2 cut(s)	188, 920
Bsp143I	GATC	4 cut(s)	36, 336, 364, 996
BspACI	CCGC	3 cut(s)	119, 251, 945
BspANI	GGCC	3 cut(s)	5, 17, 444
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	998
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	3 cut(s)	44, 991, 1004
BspQI	GCTCTTC	1 cut(s)	118
BspT104I	TTCGAA	2 cut(s)	188, 920
BsrBI	CCGCTC	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	85, 298, 599
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	4 cut(s)	36, 336, 364, 996
BssNI	GRCGYC	2 cut(s)	25, 890
Bst4CI	ACNGT	3 cut(s)	353, 808, 974
Bst6I	CTCTTC	4 cut(s)	118, 185, 307, 747
BstACI	GRCGYC	2 cut(s)	25, 890
BstBI	TTCGAA	2 cut(s)	188, 920
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	465, 473, 680
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	4 cut(s)	39, 339, 367, 999
BstMAI	GTCTC	3 cut(s)	139, 193, 821
BstMBI	GATC	4 cut(s)	36, 336, 364, 996
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 250, 475, 652, 975
BstNSI	RCATGY	1 cut(s)	985
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	973
BstV1I	GCAGC	4 cut(s)	115, 658, 661, 664
BstX2I	RGATCY	1 cut(s)	996
BstXI	CCANNNNNNTGG	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	996
BsuRI	GGCC	3 cut(s)	5, 17, 444
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	480
Cfr13I	GGNCC	2 cut(s)	16, 814
CseI	GACGC	2 cut(s)	33, 898
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	5 cut(s)	48, 67, 643, 982, 1027
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	465, 473, 680
DpnI	GATC	4 cut(s)	38, 338, 366, 998
DpnII	GATC	4 cut(s)	36, 336, 364, 996
EaeI	YGGCCR	1 cut(s)	442
Eam1104I	CTCTTC	4 cut(s)	118, 185, 307, 747
EarI	CTCTTC	4 cut(s)	118, 185, 307, 747
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	850, 861
EcoRI	GAATTC	3 cut(s)	916, 922, 1022
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	5 cut(s)	51, 70, 646, 985, 1030
FaqI	GGGAC	2 cut(s)	339, 748
FatI	CATG	5 cut(s)	47, 66, 642, 981, 1026
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	6 cut(s)	129, 251, 647, 650, 653, 946
FokI	GGATG	1 cut(s)	367
Fsp4HI	GCNGC	6 cut(s)	129, 251, 647, 650, 653, 946
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	6 cut(s)	129, 251, 647, 650, 653, 946
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	5, 17, 444
HapII	CCGG	5 cut(s)	28, 138, 160, 263, 824
HgaI	GACGC	2 cut(s)	33, 898
Hin1I	GRCGYC	2 cut(s)	25, 890
Hin1II	CATG	5 cut(s)	51, 70, 646, 985, 1030
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	5 cut(s)	28, 138, 160, 263, 824
HphI	GGTGA	2 cut(s)	337, 398
Hpy166II	GTNNAC	2 cut(s)	23, 143
Hpy188I	TCNGA	5 cut(s)	41, 62, 157, 325, 793
Hpy188III	TCNNGA	6 cut(s)	9, 362, 371, 548, 605, 886
Hpy8I	GTNNAC	2 cut(s)	23, 143
Hpy99I	CGWCG	2 cut(s)	892, 910
HpyAV	CCTTC	1 cut(s)	903
HpyCH4III	ACNGT	3 cut(s)	353, 808, 974
HpyCH4IV	ACGT	3 cut(s)	612, 932, 961
HpyCH4V	TGCA	4 cut(s)	103, 573, 646, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 250, 475, 652, 975
HpyF3I	CTNAG	3 cut(s)	465, 473, 680
HpySE526I	ACGT	3 cut(s)	612, 932, 961
Hsp92I	GRCGYC	2 cut(s)	25, 890
Hsp92II	CATG	5 cut(s)	51, 70, 646, 985, 1030
Kzo9I	GATC	4 cut(s)	36, 336, 364, 996
LguI	GCTCTTC	1 cut(s)	118
Lsp1109I	GCAGC	4 cut(s)	115, 658, 661, 664
LweI	GCATC	2 cut(s)	106, 808
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	3 cut(s)	612, 932, 961
MaeIII	GTNAC	4 cut(s)	343, 518, 693, 765
MalI	GATC	4 cut(s)	38, 338, 366, 998
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	4 cut(s)	36, 336, 364, 996
MboII	GAAGA	8 cut(s)	135, 202, 278, 324, 359, 527, 764, 888
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	996
MlsI	TGGCCA	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	444
MlyI	GAGTC	1 cut(s)	450
MmeI	TCCRAC	3 cut(s)	180, 610, 870
Mox20I	TGGCCA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	444
MseI	TTAA	3 cut(s)	284, 986, 1017
MslI	CAYNNNNRTG	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	945
MspI	CCGG	5 cut(s)	28, 138, 160, 263, 824
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	5 cut(s)	125, 250, 475, 652, 975
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	4 cut(s)	36, 336, 364, 996
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	5 cut(s)	51, 70, 646, 985, 1030
NlaIV	GGNNCC	1 cut(s)	998
NmuCI	GTSAC	2 cut(s)	343, 693
NspI	RCATGY	1 cut(s)	985
NspV	TTCGAA	2 cut(s)	188, 920
PciI	ACATGT	1 cut(s)	981
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	130, 252, 648, 651, 654, 947
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
PscI	ACATGT	1 cut(s)	981
Psp1406I	AACGTT	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	998
PspPI	GGNCC	2 cut(s)	16, 814
PsuI	RGATCY	1 cut(s)	996
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	71
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	284, 986, 1017
SatI	GCNGC	6 cut(s)	129, 251, 647, 650, 653, 946
Sau3AI	GATC	4 cut(s)	36, 336, 364, 996
Sau96I	GGNCC	2 cut(s)	16, 814
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	1 cut(s)	263
SfaNI	GCATC	2 cut(s)	106, 808
SfcI	CTRYAG	1 cut(s)	973
SfuI	TTCGAA	2 cut(s)	188, 920
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	7, 546
SmoI	CTYRAG	2 cut(s)	7, 546
SsiI	CCGC	3 cut(s)	119, 251, 945
SspI	AATATT	1 cut(s)	224
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	353, 808, 974
TaiI	ACGT	3 cut(s)	615, 935, 964
TaqI	TCGA	5 cut(s)	188, 372, 887, 920, 926
TauI	GCSGC	2 cut(s)	253, 948
Tru1I	TTAA	3 cut(s)	284, 986, 1017
Tru9I	TTAA	3 cut(s)	284, 986, 1017
TseFI	GTSAC	2 cut(s)	343, 693
TseI	GCWGC	4 cut(s)	128, 646, 649, 652
Tsp45I	GTSAC	2 cut(s)	343, 693
TspDTI	ATGAA	4 cut(s)	173, 434, 642, 1015
TspGWI	ACGGA	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	6 cut(s)	526, 742, 835, 916, 922, 1022
XceI	RCATGY	1 cut(s)	985
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.