Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Forward (+)

45257238 .. 45259019

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1326500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGAAGAGCACCTTGCTGTGACAAAAATGGCCTCAAGAAAGGCCCGTGGACGCCGGAGGAGGATCAGAAGCTCATGGATTATATTCAGAAACATGGTTATGGCAACTGGAGAACCCTCCCAAAGAATGCAGGGCTACAAAGATGCGGGAAGAGCTGCCGTCTCCGGTGGACAAACTATCTCCGACCGGACATCAAACGAGGTCGGTTTTCATTCGAAGAGGAGGAGACAATAATTCAACTCCATAGCATATTGGGCAACAAATGGTCTGCTATTGCTGCTCGTTTGCCCGGAAGAACCGACAACGAAATCAAGAACTACTGGAACACCCACATTAGGAAGAGGCTTCTCCGAATGGGAATTGATCCTGTCACCCACAGTCCCCGTCTTGATCTTCTCGACTTCTCATCCATTCTCTACAACTCATCTCATCACCACCATCAAATGAACAACTTTTCAAGGTTGCTTGGGCAACCAATTGGACTCAACCCTGAGCTACTAAGGCTAGCCACTTCTCTAATCCAATCCCGTAGAGAAAACAATAGTAACCAAAATTTTGTTCTTCAAAATGCTCAAGAAAATGATTACCACCAAATCTGCAACCCCCAAATCCAACCTCAACAACCAGTTCAAGACAATGTTCCATACCCTAATGAAGTTTCACAACTCATGCAGCAGCAGCCCAATGTAGAGTACCCATCAAGCCTAAGTGATTTTAGGTCACAAAACTCTCAACTCAACGAGTGGCAAAGTAATGTGGGGACTTCAAATTTTACGGAAGAGTACGTTGAGTTGCCAAGTTTTGCATACTTTGGGTCTGAACAGCATCAAACTGTTTTGGACCTTTCGCCGGAGAATTCAAATTTTCACTCCAACAACAGCAACCAGAACTTCAGCTTCACTTCGGTTTTCTCGACGCCTTCTTCAAGCCCGACGACTTTGAATTCGAATTCGACAACGTATTTCAACAGCGGCACAGAGGACGAACGTGAAAGCTACTGTAGCAACATGTTAAAGTTTGGGATCCCAGACATTTTGGGTGTTAATGAATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

353

Amino Acids

40.54

Weight (kDa)

6.27

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	147, 972
AclWI	GGATC	4 cut(s)	72, 359, 1018, 1031
AcsI	RAATTY	7 cut(s)	553, 769, 856, 862, 943, 949, 1049
AcuI	CTGAAG	1 cut(s)	877
AcyI	GRCGYC	2 cut(s)	53, 917
AfaI	GTAC	2 cut(s)	695, 785
AfiI	CCNNNNNNNGG	2 cut(s)	336, 850
AflIII	ACRYGT	1 cut(s)	1008
AgsI	TTSAA	9 cut(s)	239, 459, 566, 632, 768, 861, 927, 943, 967
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	73, 156, 496, 897, 996
AluI	AGCT	5 cut(s)	73, 156, 496, 897, 996
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	167, 221
AlwI	GGATC	4 cut(s)	72, 359, 1018, 1031
AoxI	GGCC	2 cut(s)	31, 43
ApeKI	GCWGC	5 cut(s)	156, 278, 673, 676, 679
ApoI	RAATTY	7 cut(s)	553, 769, 856, 862, 943, 949, 1049
ArsI	GACNNNNNNTTYG	2 cut(s)	928, 960
AspS9I	GGNCC	2 cut(s)	44, 841
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	364, 425
AsuII	TTCGAA	2 cut(s)	216, 947
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	841
BamHI	GGATCC	1 cut(s)	1023
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	5 cut(s)	143, 265, 685, 688, 691
BccI	CCATC	2 cut(s)	447, 706
BceAI	ACGGC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	167, 221
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	1000
BisI	GCNGC	6 cut(s)	157, 279, 674, 677, 680, 973
BlsI	GCNGC	6 cut(s)	158, 280, 675, 678, 681, 974
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	841
BmgT120I	GGNCC	2 cut(s)	44, 841
BmiI	GGNNCC	1 cut(s)	1025
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	134, 835
BmtI	GCTAGC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	2 cut(s)	216, 947
BpuEI	CTTGAG	2 cut(s)	20, 558
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	2 cut(s)	53, 917
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	2 cut(s)	165, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 850
Bse1I	ACTGG	3 cut(s)	113, 326, 626
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	336, 850
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	113, 326, 626
BseRI	GAGGAG	3 cut(s)	74, 236, 239
BseXI	GCAGC	5 cut(s)	143, 265, 685, 688, 691
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	33, 45
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	5 cut(s)	56, 166, 188, 291, 851
BslFI	GGGAC	2 cut(s)	366, 775
BslI	CCNNNNNNNGG	2 cut(s)	336, 850
BsmAI	GTCTC	2 cut(s)	167, 221
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	366, 775
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	33, 45
Bsp119I	TTCGAA	2 cut(s)	216, 947
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	64, 364, 391, 1023
BspACI	CCGC	2 cut(s)	147, 972
BspANI	GGCC	2 cut(s)	33, 45
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	1025
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	4 cut(s)	72, 359, 1018, 1031
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	2 cut(s)	216, 947
BsrI	ACTGG	3 cut(s)	113, 326, 626
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	64, 364, 391, 1023
BssNI	GRCGYC	2 cut(s)	53, 917
Bst4CI	ACNGT	3 cut(s)	380, 835, 1001
Bst6I	CTCTTC	4 cut(s)	146, 213, 335, 774
BstACI	GRCGYC	2 cut(s)	53, 917
BstBI	TTCGAA	2 cut(s)	216, 947
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	492, 500, 707
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	4 cut(s)	67, 367, 394, 1026
BstMAI	GTCTC	2 cut(s)	167, 221
BstMBI	GATC	4 cut(s)	64, 364, 391, 1023
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	6 cut(s)	153, 255, 278, 502, 679, 1002
BstNSI	RCATGY	1 cut(s)	1012
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	1000
BstV1I	GCAGC	5 cut(s)	143, 265, 685, 688, 691
BstX2I	RGATCY	1 cut(s)	1023
BstYI	RGATCY	1 cut(s)	1023
BsuRI	GGCC	2 cut(s)	33, 45
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	507
Cfr13I	GGNCC	2 cut(s)	44, 841
CseI	GACGC	2 cut(s)	61, 925
Csp6I	GTAC	2 cut(s)	694, 784
CviAII	CATG	5 cut(s)	76, 95, 670, 1009, 1054
CviQI	GTAC	2 cut(s)	694, 784
DdeI	CTNAG	3 cut(s)	492, 500, 707
DpnI	GATC	4 cut(s)	66, 366, 393, 1025
DpnII	GATC	4 cut(s)	64, 364, 391, 1023
Eam1104I	CTCTTC	4 cut(s)	146, 213, 335, 774
EarI	CTCTTC	4 cut(s)	146, 213, 335, 774
Eco47I	GGWCC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	877
EcoRI	GAATTC	4 cut(s)	856, 943, 949, 1049
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	5 cut(s)	79, 98, 673, 1012, 1057
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	366, 775
FatI	CATG	5 cut(s)	75, 94, 669, 1008, 1053
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	6 cut(s)	157, 279, 674, 677, 680, 973
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	6 cut(s)	157, 279, 674, 677, 680, 973
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	6 cut(s)	157, 279, 674, 677, 680, 973
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	33, 45
HapII	CCGG	5 cut(s)	56, 166, 188, 291, 851
HgaI	GACGC	2 cut(s)	61, 925
Hin1I	GRCGYC	2 cut(s)	53, 917
Hin1II	CATG	5 cut(s)	79, 98, 673, 1012, 1057
HinfI	GANTC	1 cut(s)	483
HpaII	CCGG	5 cut(s)	56, 166, 188, 291, 851
HphI	GGTGA	2 cut(s)	364, 425
Hpy166II	GTNNAC	2 cut(s)	51, 171
Hpy188I	TCNGA	5 cut(s)	69, 90, 185, 353, 820
Hpy188III	TCNNGA	7 cut(s)	37, 313, 389, 398, 575, 632, 913
Hpy8I	GTNNAC	2 cut(s)	51, 171
Hpy99I	CGWCG	2 cut(s)	919, 937
HpyAV	CCTTC	1 cut(s)	930
HpyCH4III	ACNGT	3 cut(s)	380, 835, 1001
HpyCH4IV	ACGT	3 cut(s)	786, 959, 988
HpyCH4V	TGCA	4 cut(s)	131, 600, 673, 806
HpyF10VI	GCNNNNNNNGC	6 cut(s)	153, 255, 278, 502, 679, 1002
HpyF3I	CTNAG	3 cut(s)	492, 500, 707
HpySE526I	ACGT	3 cut(s)	786, 959, 988
Hsp92I	GRCGYC	2 cut(s)	53, 917
Hsp92II	CATG	5 cut(s)	79, 98, 673, 1012, 1057
Kzo9I	GATC	4 cut(s)	64, 364, 391, 1023
LguI	GCTCTTC	1 cut(s)	146
Lsp1109I	GCAGC	5 cut(s)	143, 265, 685, 688, 691
LweI	GCATC	2 cut(s)	134, 835
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	3 cut(s)	786, 959, 988
MaeIII	GTNAC	4 cut(s)	20, 370, 545, 720
MalI	GATC	4 cut(s)	66, 366, 393, 1025
MboI	GATC	4 cut(s)	64, 364, 391, 1023
MboII	GAAGA	9 cut(s)	18, 163, 230, 306, 352, 386, 554, 791, 915
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	1023
MhlI	GDGCHC	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	3 cut(s)	208, 637, 897
MseI	TTAA	2 cut(s)	1013, 1044
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	972
MspI	CCGG	5 cut(s)	56, 166, 188, 291, 851
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	133
MwoI	GCNNNNNNNGC	6 cut(s)	153, 255, 278, 502, 679, 1002
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	64, 364, 391, 1023
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	79, 98, 673, 1012, 1057
NlaIV	GGNNCC	1 cut(s)	1025
NmuCI	GTSAC	3 cut(s)	20, 370, 720
NspI	RCATGY	1 cut(s)	1012
NspV	TTCGAA	2 cut(s)	216, 947
PciI	ACATGT	1 cut(s)	1008
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	911
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	158, 280, 675, 678, 681, 974
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PscI	ACATGT	1 cut(s)	1008
PspN4I	GGNNCC	1 cut(s)	1025
PspPI	GGNCC	2 cut(s)	44, 841
PsuI	RGATCY	1 cut(s)	1023
RsaI	GTAC	2 cut(s)	695, 785
RsaNI	GTAC	2 cut(s)	694, 784
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	1013, 1044
SatI	GCNGC	6 cut(s)	157, 279, 674, 677, 680, 973
Sau3AI	GATC	4 cut(s)	64, 364, 391, 1023
Sau96I	GGNCC	2 cut(s)	44, 841
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	134, 835
SfcI	CTRYAG	1 cut(s)	1000
SfuI	TTCGAA	2 cut(s)	216, 947
SinI	GGWCC	1 cut(s)	841
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	35, 573
SmoI	CTYRAG	2 cut(s)	35, 573
SsiI	CCGC	2 cut(s)	147, 972
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	380, 835, 1001
TaiI	ACGT	3 cut(s)	789, 962, 991
TaqI	TCGA	5 cut(s)	216, 399, 914, 947, 953
TauI	GCSGC	1 cut(s)	975
Tru1I	TTAA	2 cut(s)	1013, 1044
Tru9I	TTAA	2 cut(s)	1013, 1044
TseFI	GTSAC	3 cut(s)	20, 370, 720
TseI	GCWGC	5 cut(s)	156, 278, 673, 676, 679
Tsp45I	GTSAC	3 cut(s)	20, 370, 720
TspDTI	ATGAA	4 cut(s)	201, 461, 669, 1042
TspGWI	ACGGA	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	841
XapI	RAATTY	7 cut(s)	553, 769, 856, 862, 943, 949, 1049
XceI	RCATGY	1 cut(s)	1012
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.