RchiOBHm_Chr5g0006031
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013942
Physical Location & Seq
Reverse (-)
3793732 .. 3795320
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28718

Sequence Viewer

Length: 1086 bp
ATGGGAAGAGCACCGTGTTGTGACAAAAACGGCCTGAAAAAAGGTCCATGGACTCCGGAGGAAGATCAGAAGCTCGTTGATTATATCCAGAAACACGGTTATGGCAACTGGAGGACGCTTCCAAAGAATGCAGGACTGCAAAGATGTGGAAAGAGCTGCCGTCTCAGGTGGACCAACTATCTGCGGCCTGATATCAAACGAGGAAGATTTTCTTTTGAAGAGGAGGAGACAATTGTTCAACTGCATAGCATTTTGGGCAACAAGTGGTCTGCTATTGCTGCTCGTTTGCCTGGAAGAACTGACAATGAAATCAAGAACTACTGGAACACCCACATTAGGAAGAGGCTTCTCCGAATGGGAATCGATCCGGTTACTCACAGTCCTCGGCTTGATCTGCTTGACTTCTCTTCCATTCTATACAACTCTTCTCATCATCACCCTCAAGTAAACTTTTCAAGGTTGCTTGGGATGCAACAAATGGGACTCAACCCTGAGCTACTAAGGCTAGCCACGATCCTATCATCTCATAGAGAAAGAAATTCAAACTTCTTCATTCAAAATGACCAGCAGCAGCATCTTTGCAGTCCCCAAAATGATCAAATCCCAGTACAGCTAGTCCAATCTAGCCAGCTCCAAGAACCCTTTCAAGAAAACGTTCCAGTTTGCGCCACATTGAACACCGGTGATATTCCATTTCCTCATGAAGTACAACCACCAACCATTACTGATTTCAGTTCCCAAAATTGCCAAATAAGTGAGTGGCAAAGTAATGGCGAGGCCCCTTCAAATTTTACTGAAAACCAATATGTTCAATTACCAAGCTTGACATATTATGATGGGTCGTCGGATCACCAGATCGTCAGTGATGTTTCACCCGAAACTTCGAATTTGTACTCCTACAACAGCAACAACCAGAATTTCAACTTCACTTCGGTGTTTTCAACGCCTTGCTCAAGCCCAACGCCTTTGAATTCAAACTCGACTACATACTTCAACAGCGGCACAGAGGATGAACGTGAGAGCTACTGTAGCAACATGTTGAAGTTTGACATCCCAAACATTTTGGATGATTTCATTCATGTGTAA

Protein Analysis

361

Amino Acids

41.36

Weight (kDa)

5.94

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 1.1e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.9e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 3.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 114 9.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21440
fragaria_vesca FvH4_3g03780
malus_domestica MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica Prupe.4G035100_v2.0.a1
pyrus_communis pycom05g30090 pycom10g25700
rosa_chinensis RchiOBHm_Chr5g0006031
rosa_multiflora Rmu_sc0004331.1_g000015
rosa_roxburghii Rroxscaffold_1G00069940
rosa_rugosa Rorug04G0419200 Rorug04G0419300
rosa_samantha Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana Rw5G004700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 2 cut(s) 184, 999
AclI AACGTT 1 cut(s) 654
AclWI GGATC 3 cut(s) 359, 508, 855
AcsI RAATTY 5 cut(s) 538, 787, 886, 916, 970
AfaI GTAC 3 cut(s) 609, 708, 893
AfiI CCNNNNNNNGG 1 cut(s) 336
AflIII ACRYGT 1 cut(s) 1035
AgeI ACCGGT 1 cut(s) 680
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 627, 659
AleI CACNNNNGTG 1 cut(s) 932
AluBI AGCT 7 cut(s) 73, 156, 496, 613, 631, 822, 1023
AluI AGCT 7 cut(s) 73, 156, 496, 613, 631, 822, 1023
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 167, 221
AlwI GGATC 3 cut(s) 359, 508, 855
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 31, 185, 777
ApeKI GCWGC 4 cut(s) 156, 278, 568, 571
ApoI RAATTY 5 cut(s) 538, 787, 886, 916, 970
AsiGI ACCGGT 1 cut(s) 680
Asp700I GAANNNNTTC 3 cut(s) 208, 642, 654
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 3 cut(s) 44, 171, 778
AsuHPI GGTGA 4 cut(s) 428, 695, 842, 864
AsuII TTCGAA 1 cut(s) 884
AsuNHI GCTAGC 1 cut(s) 505
AvaII GGWCC 2 cut(s) 44, 171
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 143, 265, 580, 583
BccI CCATC 1 cut(s) 830
BceAI ACGGC 2 cut(s) 46, 144
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 167, 221
BfaI CTAG 3 cut(s) 506, 614, 624
BfmI CTRYAG 1 cut(s) 1027
BisI GCNGC 6 cut(s) 157, 185, 279, 569, 572, 1000
BlsI GCNGC 6 cut(s) 158, 186, 280, 570, 573, 1001
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 44, 171
BmgT120I GGNCC 3 cut(s) 44, 171, 778
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 599
BmsI GCATC 2 cut(s) 459, 583
BmtI GCTAGC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 426, 937
Bsa29I ATCGAT 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 47, 383
BsaWI WCCGGW 3 cut(s) 55, 367, 680
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 4 cut(s) 113, 326, 605, 659
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 2 cut(s) 47, 383
BseGI GGATG 4 cut(s) 474, 1015, 1050, 1072
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 2 cut(s) 178, 483
BseNI ACTGG 4 cut(s) 113, 326, 605, 659
BseRI GAGGAG 2 cut(s) 236, 239
BseXI GCAGC 4 cut(s) 143, 265, 580, 583
BshFI GGCC 3 cut(s) 33, 187, 779
BshTI ACCGGT 1 cut(s) 680
BshVI ATCGAT 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 3 cut(s) 56, 368, 681
BslFI GGGAC 2 cut(s) 495, 570
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 167, 221
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 2 cut(s) 495, 570
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 33, 187, 779
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 2 cut(s) 184, 999
BspANI GGCC 3 cut(s) 33, 187, 779
BspCNI CTCAG 2 cut(s) 177, 484
BspDI ATCGAT 1 cut(s) 363
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 509
BspPI GGATC 3 cut(s) 359, 508, 855
BspT104I TTCGAA 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 4 cut(s) 113, 326, 605, 659
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 2 cut(s) 47, 383
BssMI GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 15, 98, 380, 1028
Bst6I CTCTTC 4 cut(s) 213, 335, 412, 430
BstBI TTCGAA 1 cut(s) 884
BstC8I GCNNGC 2 cut(s) 507, 629
BstDEI CTNAG 3 cut(s) 164, 492, 500
BstDSI CCRYGG 1 cut(s) 47
BstF5I GGATG 4 cut(s) 474, 1015, 1050, 1072
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 7 cut(s) 67, 367, 394, 516, 598, 850, 858
BstMAI GTCTC 2 cut(s) 167, 221
BstMBI GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
BstMWI GCNNNNNNNGC 6 cut(s) 255, 278, 394, 469, 502, 1029
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 1039
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 1027
BstV1I GCAGC 4 cut(s) 143, 265, 580, 583
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 3 cut(s) 33, 187, 779
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 4 cut(s) 474, 1015, 1050, 1072
BtsIMutI CAGTG 1 cut(s) 868
Cac8I GCNNGC 2 cut(s) 507, 629
CciI TCATGA 1 cut(s) 700
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 44, 171, 778
ClaI ATCGAT 1 cut(s) 363
CseI GACGC 1 cut(s) 124
Csp6I GTAC 3 cut(s) 608, 707, 892
CspAI ACCGGT 1 cut(s) 680
CviAII CATG 4 cut(s) 48, 701, 1036, 1079
CviQI GTAC 3 cut(s) 608, 707, 892
DdeI CTNAG 3 cut(s) 164, 492, 500
DpnI GATC 7 cut(s) 66, 366, 393, 515, 597, 849, 857
DpnII GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
Eam1104I CTCTTC 4 cut(s) 213, 335, 412, 430
EarI CTCTTC 4 cut(s) 213, 335, 412, 430
Eco130I CCWWGG 1 cut(s) 47
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 2 cut(s) 44, 171
EcoO109I RGGNCCY 1 cut(s) 778
EcoRI GAATTC 1 cut(s) 970
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 4 cut(s) 51, 704, 1039, 1082
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 2 cut(s) 495, 570
FatI CATG 4 cut(s) 47, 700, 1035, 1078
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 6 cut(s) 157, 185, 279, 569, 572, 1000
FokI GGATG 4 cut(s) 481, 1022, 1037, 1079
Fsp4HI GCNGC 6 cut(s) 157, 185, 279, 569, 572, 1000
FspBI CTAG 3 cut(s) 506, 614, 624
GlaI GCGC 1 cut(s) 667
GluI GCNGC 6 cut(s) 157, 185, 279, 569, 572, 1000
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 33, 187, 779
HapII CCGG 3 cut(s) 56, 368, 681
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 668
Hin1II CATG 4 cut(s) 51, 704, 1039, 1082
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HindIII AAGCTT 1 cut(s) 820
HinfI GANTC 3 cut(s) 52, 360, 483
HpaII CCGG 3 cut(s) 56, 368, 681
HphI GGTGA 4 cut(s) 428, 695, 842, 864
Hpy166II GTNNAC 2 cut(s) 171, 448
Hpy188I TCNGA 3 cut(s) 69, 353, 847
Hpy188III TCNNGA 5 cut(s) 56, 88, 313, 647, 701
Hpy8I GTNNAC 2 cut(s) 171, 448
Hpy99I CGWCG 1 cut(s) 847
HpyAV CCTTC 1 cut(s) 792
HpyCH4III ACNGT 4 cut(s) 15, 98, 380, 1028
HpyCH4IV ACGT 2 cut(s) 654, 1015
HpyCH4V TGCA 5 cut(s) 131, 139, 244, 472, 582
HpyF10VI GCNNNNNNNGC 6 cut(s) 255, 278, 394, 469, 502, 1029
HpyF3I CTNAG 3 cut(s) 164, 492, 500
HpySE526I ACGT 2 cut(s) 654, 1015
Hsp92II CATG 4 cut(s) 51, 704, 1039, 1082
HspAI GCGC 1 cut(s) 666
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
LmnI GCTCC 1 cut(s) 636
Lsp1109I GCAGC 4 cut(s) 143, 265, 580, 583
LweI GCATC 2 cut(s) 459, 583
MaeI CTAG 3 cut(s) 506, 614, 624
MaeII ACGT 2 cut(s) 654, 1015
MaeIII GTNAC 2 cut(s) 20, 370
MalI GATC 7 cut(s) 66, 366, 393, 515, 597, 849, 857
MboI GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
MboII GAAGA 9 cut(s) 18, 74, 216, 230, 306, 352, 399, 417, 541
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 8 cut(s) 231, 538, 742, 787, 812, 886, 916, 970
MlyI GAGTC 2 cut(s) 46, 477
MmeI TCCRAC 1 cut(s) 825
MroI TCCGGA 1 cut(s) 55
MroXI GAANNNNTTC 3 cut(s) 208, 642, 654
MslI CAYNNNNRTG 3 cut(s) 99, 932, 1079
MspA1I CMGCKG 1 cut(s) 999
MspI CCGG 3 cut(s) 56, 368, 681
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 6 cut(s) 255, 278, 394, 469, 502, 1029
NcoI CCATGG 1 cut(s) 47
NdeII GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 4 cut(s) 51, 704, 1039, 1082
NlaIV GGNNCC 1 cut(s) 780
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 1039
NspV TTCGAA 1 cut(s) 884
OliI CACNNNNGTG 1 cut(s) 932
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 1035
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 3 cut(s) 208, 642, 654
PfeI GAWTC 1 cut(s) 360
PinAI ACCGGT 1 cut(s) 680
PkrI GCNGC 6 cut(s) 158, 186, 280, 570, 573, 1001
PleI GAGTC 2 cut(s) 46, 477
PpsI GAGTC 2 cut(s) 46, 477
PscI ACATGT 1 cut(s) 1035
Psp1406I AACGTT 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 3 cut(s) 44, 171, 778
RsaI GTAC 3 cut(s) 609, 708, 893
RsaNI GTAC 3 cut(s) 608, 707, 892
RseI CAYNNNNRTG 3 cut(s) 99, 932, 1079
SatI GCNGC 6 cut(s) 157, 185, 279, 569, 572, 1000
Sau3AI GATC 7 cut(s) 64, 364, 391, 513, 595, 847, 855
Sau96I GGNCC 3 cut(s) 44, 171, 778
SchI GAGTC 2 cut(s) 46, 477
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 459, 583
SfcI CTRYAG 1 cut(s) 1027
SfuI TTCGAA 1 cut(s) 884
SgrAI CRCCGGYG 1 cut(s) 680
SinI GGWCC 2 cut(s) 44, 171
SmiMI CAYNNNNRTG 3 cut(s) 99, 932, 1079
SmlI CTYRAG 2 cut(s) 441, 952
SmoI CTYRAG 2 cut(s) 441, 952
Sse9I AATT 8 cut(s) 231, 538, 742, 787, 812, 886, 916, 970
SsiI CCGC 2 cut(s) 184, 999
SspMI CTAG 3 cut(s) 506, 614, 624
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 4 cut(s) 15, 98, 380, 1028
TaiI ACGT 2 cut(s) 657, 1018
TaqI TCGA 3 cut(s) 363, 884, 980
TasI AATT 8 cut(s) 231, 538, 742, 787, 812, 886, 916, 970
TatI WGTACW 3 cut(s) 607, 706, 891
TauI GCSGC 2 cut(s) 187, 1002
TfiI GAWTC 1 cut(s) 360
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 156, 278, 568, 571
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 6 cut(s) 321, 541, 717, 1026, 1063, 1067
TspRI CASTG 1 cut(s) 868
VpaK11BI GGWCC 2 cut(s) 44, 171
XapI RAATTY 5 cut(s) 538, 787, 886, 916, 970
XceI RCATGY 1 cut(s) 1039
XmnI GAANNNNTTC 3 cut(s) 208, 642, 654
XspI CTAG 3 cut(s) 506, 614, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.