Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Reverse (-)

3760304 .. 3761834

Gene Structure 1531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG045300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGAATCGATCCGGTTACTCACAGTCCTCGGCTTGATCTGCTTGACTTCTCTTCCATTCTATACAACTCTTCTCATCATCACCCTCAAGTGAACTTTTCAAGGTTGCTTGGGATGCAACAAATGGGACTCAACCCTGAGCTACTAAGGCTAGCCACTTCTCTCCTATCACCTCATAGAGAAAGAAATTCAAACTTCTTCATTCAAAATGACCAGCAGCAGCAGCTTTGCAGTCCCCAAAATGATCAAATCCCAGTACAGCTAGTCCAATCTAGCCAGCTCCAAGAACCCTTTCAAGAAAACGTTCCAGTTTGCTCCACATTGAACACCGGTGATATTCCATTTCCTCATGAAGTACAACCACCAACCATCACTGATTTCAGTTCCCAAAATTGCCAAATAAGTGAGTGGCAAAGTAATGGCCAGGCCCCTTCAAATTTTACTGAAAACCAATATGTTCAATTACCAAGCTTGACATATTATGATGGGTCGTCGGATCACCAGATCGTTAGTGATGTTTCACCCGAAACTTCGAATTTGTACTCCTACAACAGCAACAACCAGAATTTCAACTTCACTTCGGTGTTTTCAACGCCTTGCTCAAGCCCAACGCCTTTGAATTCAAACTCGACTACATACTTCAACAGCGGCACAGAGGATGAACGTGAGAGTTACTGTAGCAACATGTTGAAGTTTGACATCCCAAACATTTTGGATGATTTCATTCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

244

Amino Acids

27.59

Weight (kDa)

4.4

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	648
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	2 cut(s)	5, 504
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	5 cut(s)	187, 436, 535, 565, 619
AfaI	GTAC	3 cut(s)	258, 357, 542
AflIII	ACRYGT	1 cut(s)	684
AgeI	ACCGGT	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	423
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AleI	CACNNNNGTG	1 cut(s)	581
AluBI	AGCT	5 cut(s)	142, 226, 262, 280, 471
AluI	AGCT	5 cut(s)	142, 226, 262, 280, 471
AlwI	GGATC	2 cut(s)	5, 504
AoxI	GGCC	2 cut(s)	421, 426
ApeKI	GCWGC	3 cut(s)	217, 220, 223
ApoI	RAATTY	5 cut(s)	187, 436, 535, 565, 619
AsiGI	ACCGGT	1 cut(s)	329
Asp700I	GAANNNNTTC	2 cut(s)	291, 303
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	5 cut(s)	74, 162, 344, 491, 513
AsuII	TTCGAA	1 cut(s)	533
AsuNHI	GCTAGC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	229, 232, 235
BccI	CCATC	2 cut(s)	377, 479
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	244
BfaI	CTAG	3 cut(s)	152, 263, 273
BfmI	CTRYAG	1 cut(s)	676
BisI	GCNGC	4 cut(s)	218, 221, 224, 649
BlsI	GCNGC	4 cut(s)	219, 222, 225, 650
Bme1390I	CCNGG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	105
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	72, 586
Bsa29I	ATCGAT	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	2 cut(s)	13, 329
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	254, 308
BseBI	CCWGG	1 cut(s)	425
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	4 cut(s)	120, 664, 699, 721
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	254, 308
BseXI	GCAGC	3 cut(s)	229, 232, 235
BshFI	GGCC	2 cut(s)	423, 428
BshTI	ACCGGT	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	14, 330
BslFI	GGGAC	2 cut(s)	141, 219
BsmFI	GGGAC	2 cut(s)	141, 219
BsnI	GGCC	2 cut(s)	423, 428
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	5 cut(s)	10, 37, 244, 496, 504
BspACI	CCGC	1 cut(s)	648
BspANI	GGCC	2 cut(s)	423, 428
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	429
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	5, 504
BspT104I	TTCGAA	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	254, 308
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	5 cut(s)	10, 37, 244, 496, 504
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	26, 677
Bst6I	CTCTTC	2 cut(s)	58, 76
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	153, 278
BstDEI	CTNAG	2 cut(s)	138, 146
BstF5I	GGATG	4 cut(s)	120, 664, 699, 721
BstKTI	GATC	5 cut(s)	13, 40, 247, 499, 507
BstMBI	GATC	5 cut(s)	10, 37, 244, 496, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 115, 148, 223
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	676
BstV1I	GCAGC	3 cut(s)	229, 232, 235
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	423, 428
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	120, 664, 699, 721
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	153, 278
CciI	TCATGA	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	427
ClaI	ATCGAT	1 cut(s)	9
Csp6I	GTAC	3 cut(s)	257, 356, 541
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	350, 685, 728
CviQI	GTAC	3 cut(s)	257, 356, 541
DdeI	CTNAG	2 cut(s)	138, 146
DpnI	GATC	5 cut(s)	12, 39, 246, 498, 506
DpnII	GATC	5 cut(s)	10, 37, 244, 496, 504
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	58, 76
EarI	CTCTTC	2 cut(s)	58, 76
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	353, 688, 731
FaiI	YATR	9 cut(s)	64, 177, 351, 456, 478, 483, 637, 686, 729
FaqI	GGGAC	2 cut(s)	141, 219
FatI	CATG	3 cut(s)	349, 684, 727
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	4 cut(s)	218, 221, 224, 649
FokI	GGATG	4 cut(s)	127, 671, 686, 728
Fsp4HI	GCNGC	4 cut(s)	218, 221, 224, 649
FspBI	CTAG	3 cut(s)	152, 263, 273
GluI	GCNGC	4 cut(s)	218, 221, 224, 649
HaeIII	GGCC	2 cut(s)	423, 428
HapII	CCGG	2 cut(s)	14, 330
Hin1II	CATG	3 cut(s)	353, 688, 731
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	2 cut(s)	6, 129
HpaII	CCGG	2 cut(s)	14, 330
HphI	GGTGA	5 cut(s)	74, 162, 344, 491, 513
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	496
Hpy188III	TCNNGA	2 cut(s)	296, 350
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	2 cut(s)	26, 677
HpyCH4IV	ACGT	2 cut(s)	303, 664
HpyCH4V	TGCA	2 cut(s)	118, 231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 115, 148, 223
HpyF3I	CTNAG	2 cut(s)	138, 146
HpySE526I	ACGT	2 cut(s)	303, 664
Hsp92II	CATG	3 cut(s)	353, 688, 731
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	10, 37, 244, 496, 504
LmnI	GCTCC	2 cut(s)	285, 320
Lsp1109I	GCAGC	3 cut(s)	229, 232, 235
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	3 cut(s)	152, 263, 273
MaeII	ACGT	2 cut(s)	303, 664
MaeIII	GTNAC	2 cut(s)	16, 671
MalI	GATC	5 cut(s)	12, 39, 246, 498, 506
MboI	GATC	5 cut(s)	10, 37, 244, 496, 504
MboII	GAAGA	3 cut(s)	45, 63, 190
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	7 cut(s)	187, 391, 436, 461, 535, 565, 619
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	5 cut(s)	39, 96, 183, 357, 649
Mox20I	TGGCCA	1 cut(s)	423
MroXI	GAANNNNTTC	2 cut(s)	291, 303
MscI	TGGCCA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	581, 728
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	648
MspI	CCGG	2 cut(s)	14, 330
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	4 cut(s)	40, 115, 148, 223
NdeII	GATC	5 cut(s)	10, 37, 244, 496, 504
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	353, 688, 731
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	10
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	581
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	1 cut(s)	684
PdmI	GAANNNNTTC	2 cut(s)	291, 303
PfeI	GAWTC	1 cut(s)	6
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	219, 222, 225, 650
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PscI	ACATGT	1 cut(s)	684
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	427
RsaI	GTAC	3 cut(s)	258, 357, 542
RsaNI	GTAC	3 cut(s)	257, 356, 541
RseI	CAYNNNNRTG	2 cut(s)	581, 728
SatI	GCNGC	4 cut(s)	218, 221, 224, 649
Sau3AI	GATC	5 cut(s)	10, 37, 244, 496, 504
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	425
SetI	ASST	9 cut(s)	107, 144, 175, 228, 264, 282, 306, 473, 667
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	533
SgrAI	CRCCGGYG	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	581, 728
SmlI	CTYRAG	2 cut(s)	87, 601
SmoI	CTYRAG	2 cut(s)	87, 601
Sse9I	AATT	7 cut(s)	187, 391, 436, 461, 535, 565, 619
SsiI	CCGC	1 cut(s)	648
SspMI	CTAG	3 cut(s)	152, 263, 273
StyD4I	CCNGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	26, 677
TaiI	ACGT	2 cut(s)	306, 667
TaqI	TCGA	3 cut(s)	9, 533, 629
TasI	AATT	7 cut(s)	187, 391, 436, 461, 535, 565, 619
TatI	WGTACW	3 cut(s)	256, 355, 540
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	6
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	3 cut(s)	217, 220, 223
TspDTI	ATGAA	5 cut(s)	190, 366, 675, 712, 716
TspRI	CASTG	1 cut(s)	379
XapI	RAATTY	5 cut(s)	187, 436, 535, 565, 619
XceI	RCATGY	1 cut(s)	688
XmnI	GAANNNNTTC	2 cut(s)	291, 303
XspI	CTAG	3 cut(s)	152, 263, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.