Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004331.1

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Forward (+)

85292 .. 86565

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004331.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgggaagagcaccgtgttgtgacaaaaacggcctgaaaaaaggtccatggacgccggaggaagatcagaagctcgttgattatatccagaaacacggttatggcaactggaggacgcttccaaagaatgcagaactgcaaagatgtggaaagagctgccgtctcaggtggaccaactatctgcggcctgatatcaaacgaggaagattttcttttgaagaggaggagacaattgttcaactgcatagcattttgggcaacaagtggtctgctattgctgctcgtttgcctggaagaaccgacaatgaaatcaagaactactggaacacccacattaggaagaggcttctccgaatgggaatcgatccggttactcacagtcctcggctcgatctgcttgacttctcttccattctgtacaactcttctcatcatcaccctcaagtaaacttttcaaggttgcttgggatgcaacaaatgggactcaaccctgagctactaaggctagccacgatcctatcatctcatagagaaagaaattcaaacttcttcattcaaaatgaccagcagcagcatctttgcagtccccaaaatgatcaaatcccagtacagctagtccaatctagccagctccaagaaccctttcaagaaaacgttccagtttgcgccacattgaacaccggtgatattccatttcctcatgaagtacaaccaccaaccattactgatttcagttcccaaaattgccaaataagtgagtggcaaagtaatggcgaggccccttcaaattttactgaaaaccaatatgttcaattaccaagcttgacatattatgatgggtcgtcggatcaccagatcgtcagtgatgtttcaccagaaacttcgaatttgtactcctacaacagcaacaaccataatttcaacttcacttcggtgttttcaacgccttgctcaagcccaacgcctttgaattcaaactcgactacatacttcaacagcggcaccgaggatgaacgtgagagctactgtagcaacatattgaagtttgacatcccaaacattttggatgatttcattcatgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

361

Amino Acids

41.43

Weight (kDa)

5.9

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1001
AciI	CCGC	2 cut(s)	184, 999
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	3 cut(s)	359, 508, 855
AcsI	RAATTY	4 cut(s)	538, 787, 886, 970
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	4 cut(s)	419, 609, 708, 893
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	680
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
AleI	CACNNNNGTG	1 cut(s)	932
AluBI	AGCT	7 cut(s)	73, 156, 496, 613, 631, 822, 1023
AluI	AGCT	7 cut(s)	73, 156, 496, 613, 631, 822, 1023
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	167, 221
AlwI	GGATC	3 cut(s)	359, 508, 855
AoxI	GGCC	3 cut(s)	31, 185, 777
ApeKI	GCWGC	4 cut(s)	156, 278, 568, 571
ApoI	RAATTY	4 cut(s)	538, 787, 886, 970
AsiGI	ACCGGT	1 cut(s)	680
Asp700I	GAANNNNTTC	3 cut(s)	208, 642, 654
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	3 cut(s)	44, 171, 778
AsuHPI	GGTGA	4 cut(s)	428, 695, 842, 864
AsuII	TTCGAA	1 cut(s)	884
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	44, 171
BanI	GGYRCC	1 cut(s)	1001
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	143, 265, 580, 583
BccI	CCATC	1 cut(s)	830
BceAI	ACGGC	2 cut(s)	46, 144
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	595
BcoDI	GTCTC	2 cut(s)	167, 221
BfaI	CTAG	3 cut(s)	506, 614, 624
BfmI	CTRYAG	1 cut(s)	1027
BisI	GCNGC	6 cut(s)	157, 185, 279, 569, 572, 1000
BlsI	GCNGC	6 cut(s)	158, 186, 280, 570, 573, 1001
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	44, 171
BmgT120I	GGNCC	3 cut(s)	44, 171, 778
BmiI	GGNNCC	2 cut(s)	780, 1003
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	459, 583
BmtI	GCTAGC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	492
Bpu14I	TTCGAA	1 cut(s)	884
BpuEI	CTTGAG	2 cut(s)	426, 937
Bsa29I	ATCGAT	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	47, 383, 1005
BsaWI	WCCGGW	2 cut(s)	367, 680
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	4 cut(s)	113, 326, 605, 659
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	47, 383, 1005
BseGI	GGATG	4 cut(s)	474, 1015, 1050, 1072
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	178, 483
BseNI	ACTGG	4 cut(s)	113, 326, 605, 659
BseRI	GAGGAG	2 cut(s)	236, 239
BseXI	GCAGC	4 cut(s)	143, 265, 580, 583
BshFI	GGCC	3 cut(s)	33, 187, 779
BshNI	GGYRCC	1 cut(s)	1001
BshTI	ACCGGT	1 cut(s)	680
BshVI	ATCGAT	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	56, 368, 681
BslFI	GGGAC	2 cut(s)	495, 570
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	167, 221
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	495, 570
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	33, 187, 779
Bsp119I	TTCGAA	1 cut(s)	884
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	184, 999
BspANI	GGCC	3 cut(s)	33, 187, 779
BspCNI	CTCAG	2 cut(s)	177, 484
BspDI	ATCGAT	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	780, 1003
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	359, 508, 855
BspT104I	TTCGAA	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	1001
BsrFI	RCCGGY	1 cut(s)	680
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	4 cut(s)	113, 326, 605, 659
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	3 cut(s)	47, 383, 1005
BssMI	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	15, 98, 380, 1028
Bst6I	CTCTTC	4 cut(s)	213, 335, 412, 430
BstACI	GRCGYC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	417
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	2 cut(s)	507, 629
BstDEI	CTNAG	3 cut(s)	164, 492, 500
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	474, 1015, 1050, 1072
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	7 cut(s)	67, 367, 394, 516, 598, 850, 858
BstMAI	GTCTC	2 cut(s)	167, 221
BstMBI	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
BstMWI	GCNNNNNNNGC	6 cut(s)	255, 278, 394, 469, 502, 1029
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	1027
BstV1I	GCAGC	4 cut(s)	143, 265, 580, 583
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	33, 187, 779
BsuTUI	ATCGAT	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	474, 1015, 1050, 1072
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	2 cut(s)	507, 629
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	3 cut(s)	44, 171, 778
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	2 cut(s)	61, 124
Csp6I	GTAC	4 cut(s)	418, 608, 707, 892
CspAI	ACCGGT	1 cut(s)	680
CviAII	CATG	3 cut(s)	48, 701, 1079
CviQI	GTAC	4 cut(s)	418, 608, 707, 892
DdeI	CTNAG	3 cut(s)	164, 492, 500
DpnI	GATC	7 cut(s)	66, 366, 393, 515, 597, 849, 857
DpnII	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
Eam1104I	CTCTTC	4 cut(s)	213, 335, 412, 430
EarI	CTCTTC	4 cut(s)	213, 335, 412, 430
Eco130I	CCWWGG	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	44, 171
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	970
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	3 cut(s)	51, 704, 1082
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FaqI	GGGAC	2 cut(s)	495, 570
FatI	CATG	3 cut(s)	47, 700, 1078
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	6 cut(s)	157, 185, 279, 569, 572, 1000
FokI	GGATG	4 cut(s)	481, 1022, 1037, 1079
Fsp4HI	GCNGC	6 cut(s)	157, 185, 279, 569, 572, 1000
FspBI	CTAG	3 cut(s)	506, 614, 624
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	6 cut(s)	157, 185, 279, 569, 572, 1000
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	33, 187, 779
HapII	CCGG	3 cut(s)	56, 368, 681
HgaI	GACGC	2 cut(s)	61, 124
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	3 cut(s)	51, 704, 1082
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	2 cut(s)	360, 483
HpaII	CCGG	3 cut(s)	56, 368, 681
HphI	GGTGA	4 cut(s)	428, 695, 842, 864
Hpy166II	GTNNAC	2 cut(s)	171, 448
Hpy188I	TCNGA	3 cut(s)	69, 353, 847
Hpy188III	TCNNGA	4 cut(s)	88, 313, 647, 701
Hpy8I	GTNNAC	2 cut(s)	171, 448
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	1 cut(s)	792
HpyCH4III	ACNGT	4 cut(s)	15, 98, 380, 1028
HpyCH4IV	ACGT	2 cut(s)	654, 1015
HpyCH4V	TGCA	5 cut(s)	131, 139, 244, 472, 582
HpyF10VI	GCNNNNNNNGC	6 cut(s)	255, 278, 394, 469, 502, 1029
HpyF3I	CTNAG	3 cut(s)	164, 492, 500
HpySE526I	ACGT	2 cut(s)	654, 1015
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	51, 704, 1082
HspAI	GCGC	1 cut(s)	666
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	4 cut(s)	143, 265, 580, 583
LweI	GCATC	2 cut(s)	459, 583
MaeI	CTAG	3 cut(s)	506, 614, 624
MaeII	ACGT	2 cut(s)	654, 1015
MaeIII	GTNAC	2 cut(s)	20, 370
MalI	GATC	7 cut(s)	66, 366, 393, 515, 597, 849, 857
MboI	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
MboII	GAAGA	9 cut(s)	18, 74, 216, 230, 306, 352, 399, 417, 541
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	8 cut(s)	231, 538, 742, 787, 812, 886, 916, 970
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	825
MroXI	GAANNNNTTC	3 cut(s)	208, 642, 654
MslI	CAYNNNNRTG	3 cut(s)	99, 932, 1079
MspA1I	CMGCKG	1 cut(s)	999
MspI	CCGG	3 cut(s)	56, 368, 681
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	6 cut(s)	255, 278, 394, 469, 502, 1029
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	3 cut(s)	51, 704, 1082
NlaIV	GGNNCC	2 cut(s)	780, 1003
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	20
NspV	TTCGAA	1 cut(s)	884
OliI	CACNNNNGTG	1 cut(s)	932
PagI	TCATGA	1 cut(s)	700
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	3 cut(s)	208, 642, 654
PfeI	GAWTC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	6 cut(s)	158, 186, 280, 570, 573, 1001
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	780, 1003
PspPI	GGNCC	3 cut(s)	44, 171, 778
RsaI	GTAC	4 cut(s)	419, 609, 708, 893
RsaNI	GTAC	4 cut(s)	418, 608, 707, 892
RseI	CAYNNNNRTG	3 cut(s)	99, 932, 1079
SatI	GCNGC	6 cut(s)	157, 185, 279, 569, 572, 1000
Sau3AI	GATC	7 cut(s)	64, 364, 391, 513, 595, 847, 855
Sau96I	GGNCC	3 cut(s)	44, 171, 778
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	459, 583
SfcI	CTRYAG	1 cut(s)	1027
SfuI	TTCGAA	1 cut(s)	884
SgrAI	CRCCGGYG	1 cut(s)	680
SinI	GGWCC	2 cut(s)	44, 171
SmiMI	CAYNNNNRTG	3 cut(s)	99, 932, 1079
SmlI	CTYRAG	2 cut(s)	441, 952
SmoI	CTYRAG	2 cut(s)	441, 952
Sse9I	AATT	8 cut(s)	231, 538, 742, 787, 812, 886, 916, 970
SsiI	CCGC	2 cut(s)	184, 999
SspMI	CTAG	3 cut(s)	506, 614, 624
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	15, 98, 380, 1028
TaiI	ACGT	2 cut(s)	657, 1018
TaqI	TCGA	4 cut(s)	363, 390, 884, 980
TasI	AATT	8 cut(s)	231, 538, 742, 787, 812, 886, 916, 970
TatI	WGTACW	4 cut(s)	417, 607, 706, 891
TauI	GCSGC	2 cut(s)	187, 1002
TfiI	GAWTC	1 cut(s)	360
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	156, 278, 568, 571
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	6 cut(s)	321, 541, 717, 1026, 1063, 1067
TspRI	CASTG	1 cut(s)	868
VpaK11BI	GGWCC	2 cut(s)	44, 171
XapI	RAATTY	4 cut(s)	538, 787, 886, 970
XmnI	GAANNNNTTC	3 cut(s)	208, 642, 654
XspI	CTAG	3 cut(s)	506, 614, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.