Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Reverse (-)

1665597 .. 1667406

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGAAGAGCACCTTGTTGCGACAAAAATGGCCTCAAGAAAGGTCCATGGACTCCGGAGGAAGATGAGAAGCTCCTTGATTATATTCAGAAGCATGGTTATGGCAACTGGAGGACCCTCCCCAAGAATGCAGGGCTACAAAGGTGCGGGAAGAGCTGCCGTCTCCGATGGACCAACTATCTCCGGCCAGATATCAAACGAGGTCGATTTTCTTTTGAAGAGGAGGAGACAATTATTCAACTCCACAGCATACTGGGCAACAAGTGGTCTGCAATTGCGGCTCGTTTGCCCGGAAGAACCGACAACGAAATCAAGAACTACTGGAACACCCACATTAGAAAGAGGCTTCTCCGGATGGGAATTGATCCAGTCACCCACAGCCCTCGTCTTGACCTTCTTGACTTTTCATCCATTCTAAGCTCATCTCTCTACAACTCATCTCACCAGCACCAAATGAACTTCTCAAGGCTCCTTGGCCAACCCATAGGCCTCAACCCAGAGCTACTGAGGCTAGCAACTTCTCTTATCCAATCTCAAAGAGAAAACAACCATAACGCAAACAGTTTTCTTCTTCAAAACTCTCAAGAAACAAACAACTTCCACCAACTTTGCGACAATCCCCACATCCCATTTCAACAAGTCCAATCTAACCAACTTCAGCAACCCATTCAAGAAATCTCATTCTCCAATGAAGCTCCACAACTCATCATGCAGCCGGCCAATGGAGACTACCCATCAAACCTAAGTTATTTTAGGTCACAAAACTCTCAACCCAGTGATTGGCAGCAGAGCAACGTTGGGCCTTCAAATTTTACTGATGAGTATGTTGAATTACCAAGCTTTGCATATGAGTATGGCTCAGATCACCACCAAACTATTTTGGATCCTTCACCTGAGACTTCAAATTTTCACTCCAACAACAGCAACCAGAATTTCAGCTTCACTACTTCAGTCCTCTCAACCCCTTCCTCAAGCCCAACGCCTTTGAATTCAAATTCGACGACGCACAATTTCAACAGCAGCACAGAGGACGAACGCGAAAGCTACTGTAGCAACATGTTGAAGTTTGACATCCAAGACATGTTGGATGTTAATGAATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

369

Amino Acids

42.22

Weight (kDa)

5.9

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	780
AccII	CGCG	1 cut(s)	1038
AccIII	TCCGGA	2 cut(s)	55, 351
AciI	CCGC	2 cut(s)	147, 278
AclI	AACGTT	1 cut(s)	795
AclWI	GGATC	3 cut(s)	359, 878, 891
AcoI	YGGCCR	3 cut(s)	185, 475, 717
AcsI	RAATTY	6 cut(s)	808, 904, 931, 988, 994, 1097
AcuI	CTGAAG	2 cut(s)	641, 933
AfiI	CCNNNNNNNGG	2 cut(s)	722, 780
AflIII	ACRYGT	2 cut(s)	1056, 1080
AluBI	AGCT	8 cut(s)	73, 156, 420, 502, 695, 840, 939, 1044
AluI	AGCT	8 cut(s)	73, 156, 420, 502, 695, 840, 939, 1044
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	4 cut(s)	167, 221, 720, 890
AlwI	GGATC	3 cut(s)	359, 878, 891
Aor13HI	TCCGGA	2 cut(s)	55, 351
AoxI	GGCC	6 cut(s)	31, 185, 475, 487, 717, 800
ApeKI	GCWGC	4 cut(s)	156, 712, 784, 1020
ApoI	RAATTY	6 cut(s)	808, 904, 931, 988, 994, 1097
AspS9I	GGNCC	4 cut(s)	44, 114, 171, 800
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	364, 434, 857, 882
AsuNHI	GCTAGC	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	44, 114, 171
BalI	TGGCCA	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	883
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	143, 724, 796, 1032
BccI	CCATC	3 cut(s)	162, 349, 742
BceAI	ACGGC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	167, 221, 720, 890
BfaI	CTAG	1 cut(s)	512
BfmI	CTRYAG	1 cut(s)	1048
BisI	GCNGC	5 cut(s)	157, 279, 713, 785, 1021
BlsI	GCNGC	5 cut(s)	158, 280, 714, 786, 1022
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	3 cut(s)	44, 114, 171
BmgT120I	GGNCC	4 cut(s)	44, 114, 171, 800
BmiI	GGNNCC	3 cut(s)	116, 470, 885
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	2 cut(s)	263, 768
BmtI	GCTAGC	1 cut(s)	515
BmuI	ACTGGG	2 cut(s)	263, 768
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	4 cut(s)	20, 448, 567, 955
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	47, 472
BsaWI	WCCGGW	2 cut(s)	55, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	722, 780
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	5 cut(s)	113, 258, 326, 368, 774
BseAI	TCCGGA	2 cut(s)	55, 351
BseDI	CCNNGG	2 cut(s)	47, 472
BseGI	GGATG	5 cut(s)	360, 407, 624, 1071, 1093
BseLI	CCNNNNNNNGG	2 cut(s)	722, 780
BseMII	CTCAG	3 cut(s)	497, 873, 885
BseNI	ACTGG	5 cut(s)	113, 258, 326, 368, 774
BseRI	GAGGAG	2 cut(s)	236, 239
BseXI	GCAGC	4 cut(s)	143, 724, 796, 1032
Bsh1236I	CGCG	1 cut(s)	1038
BshFI	GGCC	6 cut(s)	33, 187, 477, 489, 719, 802
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	5 cut(s)	56, 184, 291, 352, 716
BslI	CCNNNNNNNGG	2 cut(s)	722, 780
BsmAI	GTCTC	4 cut(s)	167, 221, 720, 890
BsmBI	CGTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	6 cut(s)	33, 187, 477, 489, 719, 802
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	2 cut(s)	55, 351
Bsp143I	GATC	3 cut(s)	364, 862, 883
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	147, 278
BspANI	GGCC	6 cut(s)	33, 187, 477, 489, 719, 802
BspCNI	CTCAG	3 cut(s)	498, 872, 886
BspEI	TCCGGA	2 cut(s)	55, 351
BspFNI	CGCG	1 cut(s)	1038
BspLI	GGNNCC	3 cut(s)	116, 470, 885
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	3 cut(s)	359, 878, 891
BspQI	GCTCTTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	5 cut(s)	113, 258, 326, 368, 774
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	2 cut(s)	47, 472
BssMI	GATC	3 cut(s)	364, 862, 883
BssT1I	CCWWGG	2 cut(s)	47, 472
Bst4CI	ACNGT	2 cut(s)	563, 1049
Bst6I	CTCTTC	2 cut(s)	146, 213
BstC8I	GCNNGC	2 cut(s)	513, 717
BstDEI	CTNAG	5 cut(s)	416, 506, 743, 859, 894
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	5 cut(s)	360, 407, 624, 1071, 1093
BstFNI	CGCG	1 cut(s)	1038
BstKTI	GATC	3 cut(s)	367, 865, 886
BstMAI	GTCTC	4 cut(s)	167, 221, 720, 890
BstMBI	GATC	3 cut(s)	364, 862, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	153, 255, 278, 508, 1050
BstNSI	RCATGY	2 cut(s)	1060, 1084
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	1048
BstUI	CGCG	1 cut(s)	1038
BstV1I	GCAGC	4 cut(s)	143, 724, 796, 1032
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BsuRI	GGCC	6 cut(s)	33, 187, 477, 489, 719, 802
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	5 cut(s)	360, 407, 624, 1071, 1093
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	2 cut(s)	513, 717
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	4 cut(s)	44, 114, 171, 800
CseI	GACGC	1 cut(s)	1012
CspCI	CAANNNNNGTGG	2 cut(s)	590, 625
CviAII	CATG	6 cut(s)	48, 95, 709, 1057, 1081, 1102
DdeI	CTNAG	5 cut(s)	416, 506, 743, 859, 894
DpnI	GATC	3 cut(s)	366, 864, 885
DpnII	GATC	3 cut(s)	364, 862, 883
EaeI	YGGCCR	3 cut(s)	185, 475, 717
Eam1104I	CTCTTC	2 cut(s)	146, 213
EarI	CTCTTC	2 cut(s)	146, 213
Eco130I	CCWWGG	2 cut(s)	47, 472
Eco147I	AGGCCT	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	44, 114, 171
Eco57I	CTGAAG	2 cut(s)	641, 933
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRI	GAATTC	2 cut(s)	988, 1097
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 472
ErhI	CCWWGG	2 cut(s)	47, 472
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	6 cut(s)	51, 98, 712, 1060, 1084, 1105
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	6 cut(s)	47, 94, 708, 1056, 1080, 1101
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	847
Fnu4HI	GCNGC	5 cut(s)	157, 279, 713, 785, 1021
FokI	GGATG	5 cut(s)	367, 394, 611, 1058, 1100
Fsp4HI	GCNGC	5 cut(s)	157, 279, 713, 785, 1021
FspBI	CTAG	1 cut(s)	512
GluI	GCNGC	5 cut(s)	157, 279, 713, 785, 1021
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	6 cut(s)	33, 187, 477, 489, 719, 802
HapII	CCGG	5 cut(s)	56, 184, 291, 352, 716
HgaI	GACGC	1 cut(s)	1012
Hin1II	CATG	6 cut(s)	51, 98, 712, 1060, 1084, 1105
HindIII	AAGCTT	1 cut(s)	838
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	5 cut(s)	56, 184, 291, 352, 716
HphI	GGTGA	4 cut(s)	364, 434, 857, 882
Hpy188I	TCNGA	3 cut(s)	90, 167, 862
Hpy188III	TCNNGA	8 cut(s)	37, 56, 313, 352, 389, 398, 584, 671
Hpy99I	CGWCG	2 cut(s)	1003, 1006
HpyAV	CCTTC	4 cut(s)	404, 813, 897, 975
HpyCH4III	ACNGT	2 cut(s)	563, 1049
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	4 cut(s)	131, 272, 712, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	153, 255, 278, 508, 1050
HpyF3I	CTNAG	5 cut(s)	416, 506, 743, 859, 894
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	6 cut(s)	51, 98, 712, 1060, 1084, 1105
Kpn2I	TCCGGA	2 cut(s)	55, 351
KroI	GCCGGC	1 cut(s)	715
KroNI	GCCGGC	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	364, 862, 883
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	78, 474, 700
Lsp1109I	GCAGC	4 cut(s)	143, 724, 796, 1032
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	2 cut(s)	370, 756
MalI	GATC	3 cut(s)	366, 864, 885
MboI	GATC	3 cut(s)	364, 862, 883
MboII	GAAGA	7 cut(s)	18, 74, 163, 230, 306, 560, 563
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	1 cut(s)	13
MlsI	TGGCCA	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	2 cut(s)	939, 1065
Mox20I	TGGCCA	1 cut(s)	477
MroI	TCCGGA	2 cut(s)	55, 351
MroNI	GCCGGC	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	1 cut(s)	1092
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	477
MspI	CCGG	5 cut(s)	56, 184, 291, 352, 716
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	133
MvnI	CGCG	1 cut(s)	1038
MwoI	GCNNNNNNNGC	5 cut(s)	153, 255, 278, 508, 1050
NaeI	GCCGGC	1 cut(s)	717
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	847
NdeII	GATC	3 cut(s)	364, 862, 883
NgoMIV	GCCGGC	1 cut(s)	715
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	6 cut(s)	51, 98, 712, 1060, 1084, 1105
NlaIV	GGNNCC	3 cut(s)	116, 470, 885
NmuCI	GTSAC	2 cut(s)	370, 756
NspI	RCATGY	2 cut(s)	1060, 1084
PceI	AGGCCT	1 cut(s)	489
PciI	ACATGT	2 cut(s)	1056, 1080
PciSI	GCTCTTC	1 cut(s)	146
PctI	GAATGC	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	717
PflMI	CCANNNNNTGG	1 cut(s)	780
PkrI	GCNGC	5 cut(s)	158, 280, 714, 786, 1022
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	114
PscI	ACATGT	2 cut(s)	1056, 1080
Psp1406I	AACGTT	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	116, 470, 885
PspPI	GGNCC	4 cut(s)	44, 114, 171, 800
PspPPI	RGGWCCY	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	883
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	1092
SatI	GCNGC	5 cut(s)	157, 279, 713, 785, 1021
Sau3AI	GATC	3 cut(s)	364, 862, 883
Sau96I	GGNCC	4 cut(s)	44, 114, 171, 800
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	1048
SinI	GGWCC	3 cut(s)	44, 114, 171
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	4 cut(s)	35, 463, 582, 970
SmoI	CTYRAG	4 cut(s)	35, 463, 582, 970
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	147, 278
SspMI	CTAG	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	47, 472
TaaI	ACNGT	2 cut(s)	563, 1049
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	2 cut(s)	205, 998
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	1092
Tru9I	TTAA	1 cut(s)	1092
TscAI	CASTG	1 cut(s)	781
TseFI	GTSAC	2 cut(s)	370, 756
TseI	GCWGC	4 cut(s)	156, 712, 784, 1020
Tsp45I	GTSAC	2 cut(s)	370, 756
TspDTI	ATGAA	4 cut(s)	396, 470, 705, 1090
TspRI	CASTG	1 cut(s)	781
Van91I	CCANNNNNTGG	1 cut(s)	780
VpaK11BI	GGWCC	3 cut(s)	44, 114, 171
XapI	RAATTY	6 cut(s)	808, 904, 931, 988, 994, 1097
XceI	RCATGY	2 cut(s)	1060, 1084
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.