Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Forward (+)

39077114 .. 39078723

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1304600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGAAGAGCACCTTGTTGTGACAAAAGCGGCCTCAAGAAAGGTCCGTGGACGCCGGAGGAGGATCAGAAGCTCATGGATTATATCCAGAAACATGGTTATGGCAACTGGAGAACCCTCCCAAAGAATGCAGGGCTACAAAGATGTGGGAAGAGCTGCCGTCTCCGGTGGACAAACTATCTCCGACCGGACATCAAACGAGGACGGTTTTCATTTGAAGAGGAGGAGACAATTATTCAACTCCACAGCATATTGGGCAACAAATGGTCTGCTATTGCTGCTCGTTTGCCTGGAAGAACCGACAACGAAATCAAGAACTACTGGAACACCCACATTAGGAAGAGACTTCTCCGAATGGGAATAGATCCGGTCACCCACATTCCCCGTCTTGATCTTCTCGACTTCTCATCCATTCTCTACAACTCATCTCATCACCACCACCAAATGAACAACTTTTCAAGGTTGCTTGGGCAACCAATTGGACTCAACCCAGAACTACTAAGGCTAGCCACTTCTCTAATCCAATCACATAGAGAAAGCAACAGTAACCAAAATTTCGTTCTTCAAAATGCTCAAGAAAATGATTACCACCAAATTTGCAACCCCCAAATCCAAGTTTCAAACCAAGTCCAATGTAACCAACTTCAACAACCAATTCAACACAATGTTCCGTACGCTAATGAAGCTGCACAAATCATGCAGCAGCAGCCCAATGTAGAGTACCCATCAAGCCTAAGTGATTTTAGATCACAAATTTCTCAACACAATGAGTGGCAAAGTAATGCGGGGACTTCAAATTTTACCGAAGAATATGTTGAGTTACCAAGCTTTGCTTACTTTGGGTCTGAACAGAATCAAACTGTTTTGGATATTTCGCCAGAGACTTCAAATATTCACTCCAACAACAGCAACCAGAATTTCAGTTTCACTTCGGTTTTCTCGACGCCTTCTTCAAGCCCGACGCCTATGAATTCGAATTCGACAACATATTTTAACAGCGGCACAGAGGACGAACGTGAAAGCTACTGTAGCAACATGTTAAAGTTTGACATCCCAAGCATCCTGGATGTTAATGAATTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

362

Amino Acids

41.51

Weight (kDa)

6.23

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.3e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	4.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 785, 999
AclWI	GGATC	2 cut(s)	72, 359
AcsI	RAATTY	8 cut(s)	553, 594, 753, 796, 916, 970, 976, 1076
AcyI	GRCGYC	3 cut(s)	53, 944, 962
AfaI	GTAC	2 cut(s)	674, 722
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	1035
AjnI	CCWGG	2 cut(s)	289, 1062
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	73, 156, 686, 828, 1023
AluI	AGCT	5 cut(s)	73, 156, 686, 828, 1023
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	4 cut(s)	167, 221, 337, 875
AlwI	GGATC	2 cut(s)	72, 359
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	6 cut(s)	156, 278, 686, 700, 703, 706
ApoI	RAATTY	8 cut(s)	553, 594, 753, 796, 916, 970, 976, 1076
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	364, 425
AsuII	TTCGAA	1 cut(s)	974
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	6 cut(s)	143, 265, 673, 712, 715, 718
BccI	CCATC	1 cut(s)	733
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	2 cut(s)	291, 1064
BcoDI	GTCTC	4 cut(s)	167, 221, 337, 875
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	1027
BisI	GCNGC	8 cut(s)	31, 157, 279, 687, 701, 704, 707, 1000
BlsI	GCNGC	8 cut(s)	32, 158, 280, 688, 702, 705, 708, 1001
Bme1390I	CCNGG	2 cut(s)	291, 1064
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	291, 1064
BmsI	GCATC	1 cut(s)	1068
BmtI	GCTAGC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	974
BpuEI	CTTGAG	2 cut(s)	20, 558
BsaHI	GRCGYC	3 cut(s)	53, 944, 962
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	3 cut(s)	165, 187, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	113, 326
BseBI	CCWGG	2 cut(s)	291, 1064
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	407, 1050, 1059, 1072
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	113, 326
BseRI	GAGGAG	3 cut(s)	74, 236, 239
BseXI	GCAGC	6 cut(s)	143, 265, 673, 712, 715, 718
BsgI	GTGCAG	1 cut(s)	672
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	4 cut(s)	56, 166, 188, 368
BsiWI	CGTACG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	802
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	4 cut(s)	167, 221, 337, 875
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	802
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	64, 364, 391, 746
BspACI	CCGC	3 cut(s)	30, 785, 999
BspANI	GGCC	1 cut(s)	33
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	72, 359
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	974
BsrI	ACTGG	2 cut(s)	113, 326
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	64, 364, 391, 746
BssNI	GRCGYC	3 cut(s)	53, 944, 962
Bst2UI	CCWGG	2 cut(s)	291, 1064
Bst4CI	ACNGT	4 cut(s)	207, 545, 862, 1028
Bst6I	CTCTTC	3 cut(s)	146, 213, 335
BstACI	GRCGYC	3 cut(s)	53, 944, 962
BstBI	TTCGAA	1 cut(s)	974
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	500, 734
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	4 cut(s)	407, 1050, 1059, 1072
BstKTI	GATC	4 cut(s)	67, 367, 394, 749
BstMAI	GTCTC	4 cut(s)	167, 221, 337, 875
BstMBI	GATC	4 cut(s)	64, 364, 391, 746
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	5 cut(s)	255, 278, 683, 706, 1029
BstNI	CCWGG	2 cut(s)	291, 1064
BstNSI	RCATGY	1 cut(s)	1039
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	289, 1062
BstSFI	CTRYAG	1 cut(s)	1027
BstV1I	GCAGC	6 cut(s)	143, 265, 673, 712, 715, 718
BstX2I	RGATCY	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	407, 1050, 1059, 1072
Cac8I	GCNNGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	3 cut(s)	61, 952, 970
Csp6I	GTAC	2 cut(s)	673, 721
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	5 cut(s)	76, 95, 697, 1036, 1081
CviQI	GTAC	2 cut(s)	673, 721
DdeI	CTNAG	2 cut(s)	500, 734
DpnI	GATC	4 cut(s)	66, 366, 393, 748
DpnII	GATC	4 cut(s)	64, 364, 391, 746
Eam1104I	CTCTTC	3 cut(s)	146, 213, 335
EarI	CTCTTC	3 cut(s)	146, 213, 335
Eco47I	GGWCC	1 cut(s)	44
Eco91I	GGTNACC	1 cut(s)	370
EcoO65I	GGTNACC	1 cut(s)	370
EcoRI	GAATTC	3 cut(s)	970, 976, 1076
EcoRII	CCWGG	2 cut(s)	289, 1062
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	5 cut(s)	79, 98, 700, 1039, 1084
FalI	AAGNNNNNCTT	3 cut(s)	30, 817, 849
FaqI	GGGAC	1 cut(s)	802
FatI	CATG	5 cut(s)	75, 94, 696, 1035, 1080
FauI	CCCGC	1 cut(s)	778
Fnu4HI	GCNGC	8 cut(s)	31, 157, 279, 687, 701, 704, 707, 1000
FokI	GGATG	4 cut(s)	394, 1037, 1046, 1079
Fsp4HI	GCNGC	8 cut(s)	31, 157, 279, 687, 701, 704, 707, 1000
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	8 cut(s)	31, 157, 279, 687, 701, 704, 707, 1000
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	4 cut(s)	56, 166, 188, 368
HgaI	GACGC	3 cut(s)	61, 952, 970
Hin1I	GRCGYC	3 cut(s)	53, 944, 962
Hin1II	CATG	5 cut(s)	79, 98, 700, 1039, 1084
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	2 cut(s)	483, 853
HpaII	CCGG	4 cut(s)	56, 166, 188, 368
HphI	GGTGA	2 cut(s)	364, 425
Hpy166II	GTNNAC	2 cut(s)	51, 171
Hpy188I	TCNGA	4 cut(s)	69, 185, 353, 847
Hpy188III	TCNNGA	7 cut(s)	37, 88, 313, 389, 398, 575, 940
Hpy8I	GTNNAC	2 cut(s)	51, 171
Hpy99I	CGWCG	2 cut(s)	946, 964
HpyAV	CCTTC	1 cut(s)	957
HpyCH4III	ACNGT	4 cut(s)	207, 545, 862, 1028
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	4 cut(s)	131, 600, 689, 700
HpyF10VI	GCNNNNNNNGC	5 cut(s)	255, 278, 683, 706, 1029
HpyF3I	CTNAG	2 cut(s)	500, 734
HpySE526I	ACGT	1 cut(s)	1015
Hsp92I	GRCGYC	3 cut(s)	53, 944, 962
Hsp92II	CATG	5 cut(s)	79, 98, 700, 1039, 1084
Kzo9I	GATC	4 cut(s)	64, 364, 391, 746
LguI	GCTCTTC	1 cut(s)	146
Lsp1109I	GCAGC	6 cut(s)	143, 265, 673, 712, 715, 718
LweI	GCATC	1 cut(s)	1068
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	5 cut(s)	20, 370, 545, 635, 819
MalI	GATC	4 cut(s)	66, 366, 393, 748
MboI	GATC	4 cut(s)	64, 364, 391, 746
MboII	GAAGA	9 cut(s)	18, 163, 230, 306, 352, 386, 554, 818, 942
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	2 cut(s)	208, 924
MnlI	CCTC	8 cut(s)	44, 52, 55, 128, 194, 214, 217, 1000
MseI	TTAA	3 cut(s)	993, 1040, 1071
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	999
MspI	CCGG	4 cut(s)	56, 166, 188, 368
MspR9I	CCNGG	2 cut(s)	291, 1064
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	291, 1064
MwoI	GCNNNNNNNGC	5 cut(s)	255, 278, 683, 706, 1029
NdeII	GATC	4 cut(s)	64, 364, 391, 746
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	79, 98, 700, 1039, 1084
NmuCI	GTSAC	2 cut(s)	20, 370
NspI	RCATGY	1 cut(s)	1039
NspV	TTCGAA	1 cut(s)	974
PciI	ACATGT	1 cut(s)	1035
PciSI	GCTCTTC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	938
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	853
Pfl23II	CGTACG	1 cut(s)	672
PfoI	TCCNGGA	1 cut(s)	1062
PkrI	GCNGC	8 cut(s)	32, 158, 280, 688, 702, 705, 708, 1001
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PscI	ACATGT	1 cut(s)	1035
Psp6I	CCWGG	2 cut(s)	289, 1062
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	289, 1062
PspLI	CGTACG	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	364
RsaI	GTAC	2 cut(s)	674, 722
RsaNI	GTAC	2 cut(s)	673, 721
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	993, 1040, 1071
SatI	GCNGC	8 cut(s)	31, 157, 279, 687, 701, 704, 707, 1000
Sau3AI	GATC	4 cut(s)	64, 364, 391, 746
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	291, 1064
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	16, 46, 75, 158, 464, 688, 830, 1018, 1025
SfaNI	GCATC	1 cut(s)	1068
SfcI	CTRYAG	1 cut(s)	1027
SfuI	TTCGAA	1 cut(s)	974
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	35, 573
SmoI	CTYRAG	2 cut(s)	35, 573
SsiI	CCGC	3 cut(s)	30, 785, 999
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	289, 1062
TaaI	ACNGT	4 cut(s)	207, 545, 862, 1028
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	4 cut(s)	399, 941, 974, 980
TauI	GCSGC	2 cut(s)	33, 1002
TfiI	GAWTC	1 cut(s)	853
Tru1I	TTAA	3 cut(s)	993, 1040, 1071
Tru9I	TTAA	3 cut(s)	993, 1040, 1071
TseFI	GTSAC	2 cut(s)	20, 370
TseI	GCWGC	6 cut(s)	156, 278, 686, 700, 703, 706
Tsp45I	GTSAC	2 cut(s)	20, 370
TspDTI	ATGAA	5 cut(s)	201, 461, 696, 983, 1069
TspGWI	ACGGA	2 cut(s)	36, 660
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	8 cut(s)	553, 594, 753, 796, 916, 970, 976, 1076
XceI	RCATGY	1 cut(s)	1039
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.