Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013942

Physical Location & Seq

Genomic Coordinates Reverse (-)

2123941 .. 2125668

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGAAGATCACCGTGTTGTGACAAAAACGGCCTGAAAAAAGGTCCTTGGACGCCGGAGGAGGATCAGAAGCTCGTTGATTATATTCAGAAACACGGTTATGGCAACTGGAGAACGCTTCCAAAGAATGCAGGACTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGATGGACCAACTATCTGAGGCCTGATATCAAACGAGGAAGATTTTCTTTTGAAGAGGAGGAGACAATTGTTCAACTGCATAGCATTTTGGGCAACAAGTGGTCTGCTATTGCTGCCCGTTTGCCAGGAAGAACCGACAATGAAATTAAGAACTACTGGAACACCCACATTAGGAAGAGGCTTCTCCGAATGGGAATCGATCCGGTTACTCACAGTCCTCGGCTTGATCTGCTTGACTTCTCTTCCATCCTATACAACCCTTCTCATCATCACCATCAAGTGAACTTTTCAAGGTTGCTTGGTATGGAACAAATGGGACTCAACCCAGAACTACTAAGGCTAGCTACTTCTCTCCTATCGTCTCATAGAGAAAGAAACTCAAACTTCTTCATTCAAAATGACCAGCAGCAGCAGCAGCAGCAGCAGCTTTGCAGTCCCCAAAATGATCAAATCCCATTACATCTAGTCCAATCTAGCCAGCTTCAAGAACCCTTTCAAGAAAACGCTCCAGTTTGCGCCACATTGGACACTAGTGCCATTCCATTTCCTCATGAAGCACAGCCATCAACCATCACTGATTTCAGTTCCCAAAATTGTCAAATAAGTGAGTGGCAAAGTAATGGCGAGGTCCCTTCCGATTTTACTGAAAGCCAATATGTTCAATTACCAAGCTTGACATATTACGACGGGTCGTCGGATAATCAGATTATCAGTGATATTTCACCGGAAACTTCAAATTTGTACTCCTACAACAGCAACAACCAGAACTTCAACTTCCCTTCGGTGTTTTCGACGCCTTCCTCGAGCCCGACGCCGTTGAACTCAAACTCGACGACATATTTTAACAGCGGAACAGAGGATGAACGTGAGAGCTACTGTAGCAACATGATGAAGTTCGACATCCCAGACATTTTTGATGATTTTATTCGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

42.02

Weight (kDa)

5.67

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	3.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 114	9.8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21440
fragaria_vesca	FvH4_3g03780
malus_domestica	MD05G1326500.v1.1 MD10G1304600.v1.1
prunus_persica	Prupe.4G035100_v2.0.a1
pyrus_communis	pycom05g30090 pycom10g25700
rosa_chinensis	RchiOBHm_Chr5g0006031
rosa_multiflora	Rmu_sc0004331.1_g000015
rosa_roxburghii	Rroxscaffold_1G00069940
rosa_rugosa	Rorug04G0419200 Rorug04G0419300
rosa_samantha	Rh5AG046900 Rh5BG045700 Rh5CG054400 Rh5DG045300
rosa_wichuraiana	Rw5G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1014
AclWI	GGATC	2 cut(s)	72, 359
AcsI	RAATTY	1 cut(s)	901
AcyI	GRCGYC	3 cut(s)	53, 959, 977
AfaI	GTAC	1 cut(s)	908
AfiI	CCNNNNNNNGG	1 cut(s)	336
AhdI	GACNNNNNGTC	1 cut(s)	856
AhlI	ACTAGT	1 cut(s)	695
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	6 cut(s)	73, 509, 592, 646, 837, 1038
AluI	AGCT	6 cut(s)	73, 509, 592, 646, 837, 1038
Alw26I	GTCTC	3 cut(s)	167, 221, 531
AlwI	GGATC	2 cut(s)	72, 359
Ama87I	CYCGRG	1 cut(s)	967
AoxI	GGCC	2 cut(s)	31, 185
ApeKI	GCWGC	8 cut(s)	278, 571, 574, 577, 580, 583, 586, 589
ApoI	RAATTY	1 cut(s)	901
Asp700I	GAANNNNTTC	2 cut(s)	208, 657
AspLEI	GCGC	1 cut(s)	683
AspS9I	GGNCC	3 cut(s)	44, 171, 793
AsuHPI	GGTGA	3 cut(s)	3, 428, 879
AsuNHI	GCTAGC	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	967
AvaII	GGWCC	3 cut(s)	44, 171, 793
BanII	GRGCYC	1 cut(s)	974
BbvI	GCAGC	8 cut(s)	265, 583, 586, 589, 592, 595, 598, 601
BccI	CCATC	5 cut(s)	162, 419, 447, 736, 743
BceAI	ACGGC	3 cut(s)	46, 144, 964
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	167, 221, 531
BcuI	ACTAGT	1 cut(s)	695
BfaI	CTAG	4 cut(s)	506, 629, 639, 696
BfmI	CTRYAG	1 cut(s)	1042
BisI	GCNGC	8 cut(s)	279, 572, 575, 578, 581, 584, 587, 590
BlsI	GCNGC	8 cut(s)	280, 573, 576, 579, 582, 585, 588, 591
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	3 cut(s)	44, 171, 793
BmeRI	GACNNNNNGTC	1 cut(s)	856
BmeT110I	CYCGRG	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	44, 171, 793
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	1 cut(s)	291
BmtI	GCTAGC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	130, 657
Bsa29I	ATCGAT	1 cut(s)	363
BsaHI	GRCGYC	3 cut(s)	53, 959, 977
BsaJI	CCNNGG	2 cut(s)	47, 383
BsaWI	WCCGGW	2 cut(s)	367, 889
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	3 cut(s)	113, 326, 674
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	47, 383
BseGI	GGATG	3 cut(s)	411, 1030, 1065
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	3 cut(s)	113, 326, 674
BseRI	GAGGAG	3 cut(s)	74, 236, 239
BseXI	GCAGC	8 cut(s)	265, 583, 586, 589, 592, 595, 598, 601
BshFI	GGCC	2 cut(s)	33, 187
BshVI	ATCGAT	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	967
BsiSI	CCGG	3 cut(s)	56, 368, 890
BslFI	GGGAC	3 cut(s)	495, 585, 779
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	3 cut(s)	167, 221, 531
BsmBI	CGTCTC	2 cut(s)	167, 531
BsmFI	GGGAC	3 cut(s)	495, 585, 779
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	33, 187
BsoBI	CYCGRG	1 cut(s)	967
Bsp1286I	GDGCHC	1 cut(s)	974
Bsp143I	GATC	5 cut(s)	8, 64, 364, 391, 610
BspACI	CCGC	1 cut(s)	1014
BspANI	GGCC	2 cut(s)	33, 187
BspCNI	CTCAG	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	795
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	72, 359
BsrI	ACTGG	3 cut(s)	113, 326, 674
BssECI	CCNNGG	2 cut(s)	47, 383
BssMI	GATC	5 cut(s)	8, 64, 364, 391, 610
BssNI	GRCGYC	3 cut(s)	53, 959, 977
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	15, 98, 380, 1043
Bst6I	CTCTTC	3 cut(s)	213, 335, 412
BstACI	GRCGYC	3 cut(s)	53, 959, 977
BstC8I	GCNNGC	2 cut(s)	507, 644
BstDEI	CTNAG	2 cut(s)	182, 500
BstF5I	GGATG	3 cut(s)	411, 1030, 1065
BstHHI	GCGC	1 cut(s)	683
BstKTI	GATC	5 cut(s)	11, 67, 367, 394, 613
BstMAI	GTCTC	3 cut(s)	167, 221, 531
BstMBI	GATC	5 cut(s)	8, 64, 364, 391, 610
BstMWI	GCNNNNNNNGC	9 cut(s)	255, 278, 394, 577, 580, 583, 586, 589, 1044
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	1042
BstV1I	GCAGC	8 cut(s)	265, 583, 586, 589, 592, 595, 598, 601
Bsu15I	ATCGAT	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	33, 187
BsuTUI	ATCGAT	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	411, 1030, 1065
BtsIMutI	CAGTG	2 cut(s)	738, 883
Cac8I	GCNNGC	2 cut(s)	507, 644
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	683
Cfr13I	GGNCC	3 cut(s)	44, 171, 793
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	3 cut(s)	61, 967, 985
Csp6I	GTAC	1 cut(s)	907
CviAII	CATG	2 cut(s)	716, 1051
CviQI	GTAC	1 cut(s)	907
DdeI	CTNAG	2 cut(s)	182, 500
DpnI	GATC	5 cut(s)	10, 66, 366, 393, 612
DpnII	GATC	5 cut(s)	8, 64, 364, 391, 610
DriI	GACNNNNNGTC	1 cut(s)	856
Eam1104I	CTCTTC	3 cut(s)	213, 335, 412
Eam1105I	GACNNNNNGTC	1 cut(s)	856
EarI	CTCTTC	3 cut(s)	213, 335, 412
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	974
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	3 cut(s)	44, 171, 793
Eco88I	CYCGRG	1 cut(s)	967
EcoO109I	RGGNCCY	2 cut(s)	44, 793
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	974
ErhI	CCWWGG	1 cut(s)	47
Esp3I	CGTCTC	2 cut(s)	167, 531
FaeI	CATG	2 cut(s)	719, 1054
FalI	AAGNNNNNCTT	2 cut(s)	196, 228
FaqI	GGGAC	3 cut(s)	495, 585, 779
FatI	CATG	2 cut(s)	715, 1050
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	8 cut(s)	279, 572, 575, 578, 581, 584, 587, 590
FokI	GGATG	3 cut(s)	398, 1037, 1052
FriOI	GRGCYC	1 cut(s)	974
Fsp4HI	GCNGC	8 cut(s)	279, 572, 575, 578, 581, 584, 587, 590
FspBI	CTAG	4 cut(s)	506, 629, 639, 696
GlaI	GCGC	1 cut(s)	682
GluI	GCNGC	8 cut(s)	279, 572, 575, 578, 581, 584, 587, 590
GsuI	CTGGAG	2 cut(s)	130, 657
HaeIII	GGCC	2 cut(s)	33, 187
HapII	CCGG	3 cut(s)	56, 368, 890
HgaI	GACGC	3 cut(s)	61, 967, 985
HhaI	GCGC	1 cut(s)	683
Hin1I	GRCGYC	3 cut(s)	53, 959, 977
Hin1II	CATG	2 cut(s)	719, 1054
Hin6I	GCGC	1 cut(s)	681
HinP1I	GCGC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	835
HinfI	GANTC	2 cut(s)	360, 483
HpaII	CCGG	3 cut(s)	56, 368, 890
HphI	GGTGA	3 cut(s)	3, 428, 879
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	8 cut(s)	69, 90, 167, 183, 353, 802, 862, 870
Hpy188III	TCNNGA	3 cut(s)	650, 662, 716
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	5 cut(s)	854, 862, 961, 979, 1000
HpyAV	CCTTC	4 cut(s)	435, 807, 954, 972
HpyCH4III	ACNGT	4 cut(s)	15, 98, 380, 1043
HpyCH4IV	ACGT	1 cut(s)	1030
HpyCH4V	TGCA	4 cut(s)	131, 139, 244, 597
HpyF10VI	GCNNNNNNNGC	9 cut(s)	255, 278, 394, 577, 580, 583, 586, 589, 1044
HpyF3I	CTNAG	2 cut(s)	182, 500
HpySE526I	ACGT	1 cut(s)	1030
Hsp92I	GRCGYC	3 cut(s)	53, 959, 977
Hsp92II	CATG	2 cut(s)	719, 1054
HspAI	GCGC	1 cut(s)	681
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	5 cut(s)	8, 64, 364, 391, 610
LmnI	GCTCC	1 cut(s)	676
Lsp1109I	GCAGC	8 cut(s)	265, 583, 586, 589, 592, 595, 598, 601
MaeI	CTAG	4 cut(s)	506, 629, 639, 696
MaeII	ACGT	1 cut(s)	1030
MaeIII	GTNAC	2 cut(s)	20, 370
MalI	GATC	5 cut(s)	10, 66, 366, 393, 612
MboI	GATC	5 cut(s)	8, 64, 364, 391, 610
MboII	GAAGA	7 cut(s)	18, 216, 230, 306, 352, 399, 544
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	974
MluCI	AATT	5 cut(s)	231, 309, 757, 827, 901
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	1 cut(s)	840
MroXI	GAANNNNTTC	2 cut(s)	208, 657
MseI	TTAA	2 cut(s)	312, 1008
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	1014
MspI	CCGG	3 cut(s)	56, 368, 890
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	9 cut(s)	255, 278, 394, 577, 580, 583, 586, 589, 1044
NdeII	GATC	5 cut(s)	8, 64, 364, 391, 610
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	2 cut(s)	719, 1054
NlaIV	GGNNCC	1 cut(s)	795
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	967
PagI	TCATGA	1 cut(s)	715
PceI	AGGCCT	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	2 cut(s)	953, 965
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	2 cut(s)	208, 657
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	8 cut(s)	280, 573, 576, 579, 582, 585, 588, 591
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PpuMI	RGGWCCY	2 cut(s)	44, 793
Psp5II	RGGWCCY	2 cut(s)	44, 793
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	3 cut(s)	44, 171, 793
PspPPI	RGGWCCY	2 cut(s)	44, 793
PspXI	VCTCGAGB	1 cut(s)	967
RsaI	GTAC	1 cut(s)	908
RsaNI	GTAC	1 cut(s)	907
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	312, 1008
SatI	GCNGC	8 cut(s)	279, 572, 575, 578, 581, 584, 587, 590
Sau3AI	GATC	5 cut(s)	8, 64, 364, 391, 610
Sau96I	GGNCC	3 cut(s)	44, 171, 793
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	974
SfcI	CTRYAG	1 cut(s)	1042
Sfr274I	CTCGAG	1 cut(s)	967
SinI	GGWCC	3 cut(s)	44, 171, 793
SlaI	CTCGAG	1 cut(s)	967
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
SpeI	ACTAGT	1 cut(s)	695
Sse9I	AATT	5 cut(s)	231, 309, 757, 827, 901
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	1014
SspMI	CTAG	4 cut(s)	506, 629, 639, 696
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	15, 98, 380, 1043
TaiI	ACGT	1 cut(s)	1033
TaqI	TCGA	5 cut(s)	363, 956, 968, 995, 1062
TasI	AATT	5 cut(s)	231, 309, 757, 827, 901
TatI	WGTACW	1 cut(s)	906
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	312, 1008
Tru9I	TTAA	2 cut(s)	312, 1008
TscAI	CASTG	2 cut(s)	745, 883
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	8 cut(s)	278, 571, 574, 577, 580, 583, 586, 589
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	321, 544, 732, 1041, 1070
TspRI	CASTG	2 cut(s)	745, 883
VpaK11BI	GGWCC	3 cut(s)	44, 171, 793
XapI	RAATTY	1 cut(s)	901
XhoI	CTCGAG	1 cut(s)	967
XmnI	GAANNNNTTC	2 cut(s)	208, 657
XspI	CTAG	4 cut(s)	506, 629, 639, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.