LSD1 zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G21610 AT4G21610 |
| fragaria_vesca | FvH4_3g09310 FvH4_3g09310 |
| malus_domestica | MD05G1313200.v1.1 MD10G1295400.v1.1 |
| prunus_persica | Prupe.4G046600_v2.0.a1 |
| pyrus_communis | pycom05g29120 pycom10g24730 |
| rosa_chinensis | RchiOBHm_Chr5g0008291 |
| rosa_laevigata | RLG00000031559 |
| rosa_multiflora | Rmu_co8513525.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00068170 |
| rosa_rugosa | Rorug04G0434800 Rorug04G0434800 |
| rosa_samantha | Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500 |
| rosa_wichuraiana | Rw5G005740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 77, 129, 132 |
| AclWI | GGATC | 3 cut(s) | 199, 219, 232 |
| AcsI | RAATTY | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 83 |
| AflIII | ACRYGT | 1 cut(s) | 232 |
| AgsI | TTSAA | 1 cut(s) | 275 |
| AjnI | CCWGG | 1 cut(s) | 282 |
| AluBI | AGCT | 3 cut(s) | 278, 341, 347 |
| AluI | AGCT | 3 cut(s) | 278, 341, 347 |
| Alw21I | GWGCWC | 2 cut(s) | 245, 343 |
| Alw26I | GTCTC | 1 cut(s) | 452 |
| AlwI | GGATC | 3 cut(s) | 199, 219, 232 |
| AoxI | GGCC | 1 cut(s) | 174 |
| ApeKI | GCWGC | 1 cut(s) | 418 |
| ApoI | RAATTY | 1 cut(s) | 162 |
| AspS9I | GGNCC | 3 cut(s) | 74, 175, 425 |
| AsuC2I | CCSGG | 1 cut(s) | 84 |
| AsuHPI | GGTGA | 3 cut(s) | 112, 118, 307 |
| AvaII | GGWCC | 2 cut(s) | 74, 425 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 311, 344 |
| BamHI | GGATCC | 1 cut(s) | 224 |
| BanII | GRGCYC | 1 cut(s) | 343 |
| Bbv12I | GWGCWC | 2 cut(s) | 245, 343 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BccI | CCATC | 2 cut(s) | 81, 131 |
| BceAI | ACGGC | 1 cut(s) | 119 |
| BciT130I | CCWGG | 1 cut(s) | 284 |
| BciVI | GTATCC | 1 cut(s) | 339 |
| BcnI | CCSGG | 1 cut(s) | 84 |
| BcoDI | GTCTC | 1 cut(s) | 452 |
| BfmI | CTRYAG | 1 cut(s) | 96 |
| BfuI | GTATCC | 1 cut(s) | 339 |
| BisI | GCNGC | 2 cut(s) | 132, 419 |
| BlsI | GCNGC | 2 cut(s) | 133, 420 |
| Bme1390I | CCNGG | 2 cut(s) | 84, 284 |
| Bme18I | GGWCC | 2 cut(s) | 74, 425 |
| BmgT120I | GGNCC | 3 cut(s) | 74, 175, 425 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmrFI | CCNGG | 2 cut(s) | 84, 284 |
| BpmI | CTGGAG | 1 cut(s) | 327 |
| BpuMI | CCSGG | 1 cut(s) | 84 |
| BsaBI | GATNNNNATC | 1 cut(s) | 91 |
| BsaJI | CCNNGG | 1 cut(s) | 407 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 83 |
| Bse8I | GATNNNNATC | 1 cut(s) | 91 |
| BseBI | CCWGG | 1 cut(s) | 284 |
| BseDI | CCNNGG | 1 cut(s) | 407 |
| BseGI | GGATG | 1 cut(s) | 92 |
| BseJI | GATNNNNATC | 1 cut(s) | 91 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BseMII | CTCAG | 2 cut(s) | 405, 463 |
| BseRI | GAGGAG | 3 cut(s) | 74, 99, 235 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BshFI | GGCC | 1 cut(s) | 176 |
| BsiHKAI | GWGCWC | 2 cut(s) | 245, 343 |
| BsiSI | CCGG | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BsmAI | GTCTC | 1 cut(s) | 452 |
| BsnI | GGCC | 1 cut(s) | 176 |
| Bsp1286I | GDGCHC | 2 cut(s) | 245, 343 |
| Bsp143I | GATC | 2 cut(s) | 191, 224 |
| Bsp19I | CCATGG | 1 cut(s) | 407 |
| BspACI | CCGC | 3 cut(s) | 77, 129, 132 |
| BspANI | GGCC | 1 cut(s) | 176 |
| BspCNI | CTCAG | 2 cut(s) | 406, 462 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 1 cut(s) | 100 |
| BspPI | GGATC | 3 cut(s) | 199, 219, 232 |
| BssECI | CCNNGG | 1 cut(s) | 407 |
| BssMI | GATC | 2 cut(s) | 191, 224 |
| BssT1I | CCWWGG | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 1 cut(s) | 284 |
| Bst4CI | ACNGT | 3 cut(s) | 47, 157, 259 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 60 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 1 cut(s) | 200 |
| BstDEI | CTNAG | 3 cut(s) | 218, 414, 449 |
| BstDSI | CCRYGG | 1 cut(s) | 407 |
| BstF5I | GGATG | 1 cut(s) | 92 |
| BstKTI | GATC | 2 cut(s) | 194, 227 |
| BstMAI | GTCTC | 1 cut(s) | 452 |
| BstMBI | GATC | 2 cut(s) | 191, 224 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 309 |
| BstNI | CCWGG | 1 cut(s) | 284 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSCI | CCNGG | 2 cut(s) | 82, 282 |
| BstSFI | CTRYAG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstX2I | RGATCY | 2 cut(s) | 191, 224 |
| BstYI | RGATCY | 2 cut(s) | 191, 224 |
| BsuI | GTATCC | 1 cut(s) | 339 |
| BsuRI | GGCC | 1 cut(s) | 176 |
| BtgI | CCRYGG | 1 cut(s) | 407 |
| BtsCI | GGATG | 1 cut(s) | 92 |
| BtsIMutI | CAGTG | 1 cut(s) | 391 |
| Cac8I | GCNNGC | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 3 cut(s) | 74, 175, 425 |
| CsiI | ACCWGGT | 1 cut(s) | 282 |
| CviAII | CATG | 2 cut(s) | 233, 408 |
| CviJI | RGCY | 4 cut(s) | 176, 278, 341, 347 |
| CviKI_1 | RGCY | 4 cut(s) | 176, 278, 341, 347 |
| DdeI | CTNAG | 3 cut(s) | 218, 414, 449 |
| DpnI | GATC | 2 cut(s) | 193, 226 |
| DpnII | GATC | 2 cut(s) | 191, 224 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 60 |
| EarI | CTCTTC | 2 cut(s) | 51, 60 |
| EciI | GGCGGA | 1 cut(s) | 66 |
| Ecl136II | GAGCTC | 1 cut(s) | 341 |
| Eco130I | CCWWGG | 1 cut(s) | 407 |
| Eco24I | GRGCYC | 1 cut(s) | 343 |
| Eco32I | GATATC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 2 cut(s) | 74, 425 |
| Eco53kI | GAGCTC | 1 cut(s) | 341 |
| EcoICRI | GAGCTC | 1 cut(s) | 341 |
| EcoRII | CCWGG | 1 cut(s) | 282 |
| EcoRV | GATATC | 1 cut(s) | 382 |
| EcoT14I | CCWWGG | 1 cut(s) | 407 |
| EcoT38I | GRGCYC | 1 cut(s) | 343 |
| ErhI | CCWWGG | 1 cut(s) | 407 |
| FaeI | CATG | 2 cut(s) | 236, 411 |
| FaiI | YATR | 4 cut(s) | 187, 234, 336, 409 |
| FatI | CATG | 2 cut(s) | 232, 407 |
| Fnu4HI | GCNGC | 2 cut(s) | 132, 419 |
| FokI | GGATG | 1 cut(s) | 99 |
| FriOI | GRGCYC | 1 cut(s) | 343 |
| Fsp4HI | GCNGC | 2 cut(s) | 132, 419 |
| GluI | GCNGC | 2 cut(s) | 132, 419 |
| GsuI | CTGGAG | 1 cut(s) | 327 |
| HaeIII | GGCC | 1 cut(s) | 176 |
| HapII | CCGG | 1 cut(s) | 83 |
| Hin1II | CATG | 2 cut(s) | 236, 411 |
| HinfI | GANTC | 1 cut(s) | 92 |
| HpaII | CCGG | 1 cut(s) | 83 |
| HphI | GGTGA | 3 cut(s) | 112, 118, 307 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 2 cut(s) | 255, 415 |
| Hpy188III | TCNNGA | 3 cut(s) | 167, 272, 451 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| HpyAV | CCTTC | 2 cut(s) | 22, 65 |
| HpyCH4III | ACNGT | 3 cut(s) | 47, 157, 259 |
| HpyCH4V | TGCA | 5 cut(s) | 98, 198, 303, 312, 366 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 309 |
| HpyF3I | CTNAG | 3 cut(s) | 218, 414, 449 |
| Hsp92II | CATG | 2 cut(s) | 236, 411 |
| Kzo9I | GATC | 2 cut(s) | 191, 224 |
| LmnI | GCTCC | 3 cut(s) | 248, 338, 346 |
| LpnPI | CCDG | 8 cut(s) | 96, 184, 269, 278, 296, 357, 376, 436 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| MabI | ACCWGGT | 1 cut(s) | 282 |
| MaeIII | GTNAC | 2 cut(s) | 118, 373 |
| MalI | GATC | 2 cut(s) | 193, 226 |
| MboI | GATC | 2 cut(s) | 191, 224 |
| MboII | GAAGA | 7 cut(s) | 17, 44, 62, 65, 68, 77, 95 |
| MfeI | CAATTG | 1 cut(s) | 307 |
| MflI | RGATCY | 2 cut(s) | 191, 224 |
| MhlI | GDGCHC | 2 cut(s) | 245, 343 |
| MluCI | AATT | 5 cut(s) | 162, 298, 307, 367, 463 |
| MseI | TTAA | 4 cut(s) | 237, 261, 440, 466 |
| MspA1I | CMGCKG | 1 cut(s) | 347 |
| MspI | CCGG | 1 cut(s) | 83 |
| MspR9I | CCNGG | 2 cut(s) | 84, 284 |
| MunI | CAATTG | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 284 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 309 |
| NciI | CCSGG | 1 cut(s) | 84 |
| NcoI | CCATGG | 1 cut(s) | 407 |
| NdeII | GATC | 2 cut(s) | 191, 224 |
| NlaIII | CATG | 2 cut(s) | 236, 411 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 2 cut(s) | 118, 373 |
| NspI | RCATGY | 1 cut(s) | 236 |
| PciI | ACATGT | 1 cut(s) | 232 |
| PfeI | GAWTC | 1 cut(s) | 92 |
| PfoI | TCCNGGA | 1 cut(s) | 82 |
| PkrI | GCNGC | 2 cut(s) | 133, 420 |
| PscI | ACATGT | 1 cut(s) | 232 |
| Psp124BI | GAGCTC | 1 cut(s) | 343 |
| Psp6I | CCWGG | 1 cut(s) | 282 |
| PspGI | CCWGG | 1 cut(s) | 282 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PspPI | GGNCC | 3 cut(s) | 74, 175, 425 |
| PstI | CTGCAG | 1 cut(s) | 100 |
| PsuI | RGATCY | 2 cut(s) | 191, 224 |
| PvuII | CAGCTG | 1 cut(s) | 347 |
| SacI | GAGCTC | 1 cut(s) | 343 |
| SaqAI | TTAA | 4 cut(s) | 237, 261, 440, 466 |
| SatI | GCNGC | 2 cut(s) | 132, 419 |
| Sau3AI | GATC | 2 cut(s) | 191, 224 |
| Sau96I | GGNCC | 3 cut(s) | 74, 175, 425 |
| ScrFI | CCNGG | 2 cut(s) | 84, 284 |
| SduI | GDGCHC | 2 cut(s) | 245, 343 |
| SetI | ASST | 7 cut(s) | 76, 280, 288, 297, 343, 349, 406 |
| SexAI | ACCWGGT | 1 cut(s) | 282 |
| SfcI | CTRYAG | 1 cut(s) | 96 |
| SinI | GGWCC | 2 cut(s) | 74, 425 |
| Sse9I | AATT | 5 cut(s) | 162, 298, 307, 367, 463 |
| SsiI | CCGC | 3 cut(s) | 77, 129, 132 |
| SstI | GAGCTC | 1 cut(s) | 343 |
| StyD4I | CCNGG | 2 cut(s) | 82, 282 |
| StyI | CCWWGG | 1 cut(s) | 407 |
| TaaI | ACNGT | 3 cut(s) | 47, 157, 259 |
| TasI | AATT | 5 cut(s) | 162, 298, 307, 367, 463 |
| TauI | GCSGC | 1 cut(s) | 134 |
| TfiI | GAWTC | 1 cut(s) | 92 |
| Tru1I | TTAA | 4 cut(s) | 237, 261, 440, 466 |
| Tru9I | TTAA | 4 cut(s) | 237, 261, 440, 466 |
| TscAI | CASTG | 1 cut(s) | 391 |
| TseFI | GTSAC | 2 cut(s) | 118, 373 |
| TseI | GCWGC | 1 cut(s) | 418 |
| Tsp45I | GTSAC | 2 cut(s) | 118, 373 |
| TspRI | CASTG | 1 cut(s) | 391 |
| VpaK11BI | GGWCC | 2 cut(s) | 74, 425 |
| XapI | RAATTY | 1 cut(s) | 162 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 185 |