Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011353

Physical Location & Seq

Genomic Coordinates Forward (+)

38294082 .. 38296375

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1295400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACTAGTCCAACTCCAAGGCGTTTTCTGCAATCCGCCGCTTGTGCCAAGCGTCCAAGCGACAGCAACGAAGAAGCACAGAGGAGGAGGATGGAGAGCAAAGTAGATGTAGACGAAGCGCCGCAGCCGGAGCTCCAATCCACCGCCGCGCAGCCATCACCGCCTTCCGAAATAGCTCAACTGGTTTGTGGCTCTTGCCGCCGCCTGCTTAAGTATCCCCGAGGAGCCAGACATGTCGAATGCTCGTGCTGTCAGACAGTCAACTTTGTTTTAGAAGCTCATCAGGTTGGACAAGTGAAATGTGGTAGTTGTGCAGTGTTGCTGATGTACCCATATGGAGCGGCATCCGTTAGGTGTTCCTCTTGCAATTTTGTGACAGAAGTTGGAGAACACAACAAGCGCCCGCCATGGTCCGTCCAACAGGGGCAATCACCAACTCCTCCTAATCCTGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0031347 GO:0031349 GO:0040008 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

153

Amino Acids

16.65

Weight (kDa)

8.58

Isoelectric Point (pI)

87.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	63 - 87	1.8e-11	LSD1 zinc finger
zf-LSD1	PF06943	101 - 125	2.3e-12	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21610 AT4G21610
fragaria_vesca	FvH4_3g09310 FvH4_3g09310
malus_domestica	MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica	Prupe.4G046600_v2.0.a1
pyrus_communis	pycom05g29120 pycom10g24730
rosa_chinensis	RchiOBHm_Chr5g0008291
rosa_laevigata	RLG00000031559
rosa_multiflora	Rmu_co8513525.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068170
rosa_rugosa	Rorug04G0434800 Rorug04G0434800
rosa_samantha	Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana	Rw5G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	329
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	5
AluBI	AGCT	3 cut(s)	133, 176, 278
AluI	AGCT	3 cut(s)	133, 176, 278
Alw21I	GWGCWC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	124, 151
AspLEI	GCGC	3 cut(s)	121, 151, 402
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	150, 423
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	136, 163
BccI	CCATC	2 cut(s)	85, 163
BciVI	GTATCC	1 cut(s)	225
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	2 cut(s)	122, 403
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	225
BisI	GCNGC	8 cut(s)	39, 122, 125, 147, 152, 199, 202, 342
BlsI	GCNGC	8 cut(s)	40, 123, 126, 148, 153, 200, 203, 343
Bme18I	GGWCC	1 cut(s)	411
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	17, 220, 407
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	17, 220, 407
BseGI	GGATG	2 cut(s)	96, 344
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	4 cut(s)	97, 100, 237, 429
BseXI	GCAGC	2 cut(s)	136, 163
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	226
BspTI	CTTAAG	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	17, 220, 407
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	17, 407
Bst2BI	CACGAG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	259
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	206, 404
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	96, 344
BstFNI	CGCG	1 cut(s)	149
BstH2I	RGCGCY	2 cut(s)	122, 403
BstHHI	GCGC	3 cut(s)	121, 151, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 44, 130, 160, 198
BstNSI	RCATGY	1 cut(s)	236
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	136, 163
BsuI	GTATCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	96, 344
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	2 cut(s)	206, 404
CfoI	GCGC	3 cut(s)	121, 151, 402
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	233, 408
CviJI	RGCY	7 cut(s)	127, 133, 154, 176, 192, 227, 278
CviKI_1	RGCY	7 cut(s)	127, 133, 154, 176, 192, 227, 278
CviQI	GTAC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	17, 407
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	17, 407
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	17, 407
FaeI	CATG	2 cut(s)	236, 411
FaiI	YATR	4 cut(s)	234, 334, 336, 409
FatI	CATG	2 cut(s)	232, 407
FauI	CCCGC	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	8 cut(s)	39, 122, 125, 147, 152, 199, 202, 342
FokI	GGATG	2 cut(s)	103, 331
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	8 cut(s)	39, 122, 125, 147, 152, 199, 202, 342
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	3 cut(s)	120, 150, 401
GluI	GCNGC	8 cut(s)	39, 122, 125, 147, 152, 199, 202, 342
HaeII	RGCGCY	2 cut(s)	122, 403
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	3 cut(s)	121, 151, 402
Hin1II	CATG	2 cut(s)	236, 411
Hin6I	GCGC	3 cut(s)	119, 149, 400
HinP1I	GCGC	3 cut(s)	119, 149, 400
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	150, 423
Hpy166II	GTNNAC	3 cut(s)	112, 262, 454
Hpy188I	TCNGA	2 cut(s)	169, 255
Hpy8I	GTNNAC	3 cut(s)	112, 262, 454
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	3 cut(s)	31, 314, 366
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 44, 130, 160, 198
Hsp92II	CATG	2 cut(s)	236, 411
HspAI	GCGC	3 cut(s)	119, 149, 400
LmnI	GCTCC	4 cut(s)	130, 138, 224, 338
LpnPI	CCDG	6 cut(s)	141, 167, 218, 241, 269, 407
Lsp1109I	GCAGC	2 cut(s)	136, 163
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	373
MbiI	CCGCTC	1 cut(s)	341
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	367
MmeI	TCCRAC	4 cut(s)	35, 268, 364, 442
MnlI	CCTC	6 cut(s)	75, 78, 81, 215, 370, 450
MseI	TTAA	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	245
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	28, 44, 130, 160, 198
NcoI	CCATGG	1 cut(s)	407
NdeI	CATATG	1 cut(s)	334
NlaIII	CATG	2 cut(s)	236, 411
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	236
PciI	ACATGT	1 cut(s)	232
PctI	GAATGC	1 cut(s)	245
PkrI	GCNGC	8 cut(s)	40, 123, 126, 148, 153, 200, 203, 343
PscI	ACATGT	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	411
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	8 cut(s)	39, 122, 125, 147, 152, 199, 202, 342
Sau96I	GGNCC	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	5 cut(s)	135, 178, 280, 288, 356
SfaNI	GCATC	1 cut(s)	353
SinI	GGWCC	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	2 cut(s)	17, 407
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	237
TasI	AATT	1 cut(s)	367
TauI	GCSGC	6 cut(s)	41, 124, 149, 201, 204, 344
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	2 cut(s)	124, 151
Tsp45I	GTSAC	1 cut(s)	373
TspGWI	ACGGA	2 cut(s)	337, 403
TspRI	CASTG	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	411
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.