RLG00000031559

LOL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011353
Physical Location & Seq
Reverse (-)
6187708 .. 6189314
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031559

Sequence Viewer

Length: 381 bp
ATGGAGACCAAAGTGCAGCAAGTAGACGAAGCGCCACCGCCGGAGGCCCAACCCATCGTTTCACAACCGCCACCACGGCCACCACTTTCCGAAATAGCTCAAATGGTTTGTGGATCTTGCCGCCGCCTGCTTACATACCCACCAGGAGCCAAGCAAGTTCAATGCTCATGCTGTCAGACTGTCAACTTTGTGCTAGAAGCCCATCAGGTTGGCCAAGTCAAATGCGGCAGTTGTACAACCCTGCTGATGTACCCATATGGAGCTCTATCCGTTAGGTGTTCCTCGTGCAATTTTGTGACAGAAGTTAGGGATCACAACAAGCGCCCTCCATGGTCTGTTCAACAAGGACAACCAACTCCTCCATCCAATTCTGTTCACTAA

Protein Analysis

127

Amino Acids

13.79

Weight (kDa)

8.1

Isoelectric Point (pI)

60.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LSD1 PF06943 37 - 61 5.9e-11 LSD1 zinc finger
zf-LSD1 PF06943 75 - 99 1.6e-12 LSD1 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21610 AT4G21610
fragaria_vesca FvH4_3g09310 FvH4_3g09310
malus_domestica MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica Prupe.4G046600_v2.0.a1
pyrus_communis pycom05g29120 pycom10g24730
rosa_chinensis RchiOBHm_Chr5g0008291
rosa_laevigata RLG00000031559
rosa_multiflora Rmu_co8513525.1_g000001
rosa_roxburghii Rroxscaffold_1G00068170
rosa_rugosa Rorug04G0434800 Rorug04G0434800
rosa_samantha Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana Rw5G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 5 cut(s) 38, 68, 121, 124, 225
AclWI GGATC 2 cut(s) 121, 318
AcoI YGGCCR 2 cut(s) 77, 211
AfaI GTAC 2 cut(s) 235, 251
AgsI TTSAA 2 cut(s) 161, 341
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 98, 263
AluI AGCT 2 cut(s) 98, 263
Alw21I GWGCWC 1 cut(s) 265
AlwI GGATC 2 cut(s) 121, 318
AoxI GGCC 3 cut(s) 45, 77, 211
ApeKI GCWGC 1 cut(s) 16
AspLEI GCGC 2 cut(s) 34, 324
AspS9I GGNCC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 213
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 28
BccI CCATC 3 cut(s) 62, 210, 370
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 194
BfoI RGCGCY 2 cut(s) 35, 325
BglI GCCNNNNNGGC 1 cut(s) 76
BisI GCNGC 4 cut(s) 17, 121, 124, 226
BlsI GCNGC 4 cut(s) 18, 122, 125, 227
Bme1390I CCNGG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 74, 329
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 74, 329
BseGI GGATG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 3 cut(s) 47, 79, 213
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 41
BsnI GGCC 3 cut(s) 47, 79, 213
Bsp1286I GDGCHC 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 233
Bsp143I GATC 2 cut(s) 113, 310
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 5 cut(s) 38, 68, 121, 124, 225
BspANI GGCC 3 cut(s) 47, 79, 213
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 2 cut(s) 121, 318
BsrGI TGTACA 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 74, 329
BssMI GATC 2 cut(s) 113, 310
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 128
BstDSI CCRYGG 2 cut(s) 74, 329
BstF5I GGATG 1 cut(s) 362
BstH2I RGCGCY 2 cut(s) 35, 325
BstHHI GCGC 2 cut(s) 34, 324
BstKTI GATC 2 cut(s) 116, 313
BstMBI GATC 2 cut(s) 113, 310
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 3 cut(s) 47, 79, 213
BtgI CCRYGG 2 cut(s) 74, 329
BtsCI GGATG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 2 cut(s) 34, 324
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 234, 250
CviAII CATG 2 cut(s) 168, 330
CviJI RGCY 7 cut(s) 47, 79, 98, 149, 200, 213, 263
CviKI_1 RGCY 7 cut(s) 47, 79, 98, 149, 200, 213, 263
CviQI GTAC 2 cut(s) 234, 250
DpnI GATC 2 cut(s) 115, 312
DpnII GATC 2 cut(s) 113, 310
EaeI YGGCCR 2 cut(s) 77, 211
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 329
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 329
FaeI CATG 2 cut(s) 171, 333
FaiI YATR 5 cut(s) 136, 169, 256, 258, 331
FatI CATG 2 cut(s) 167, 329
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 4 cut(s) 17, 121, 124, 226
FokI GGATG 1 cut(s) 349
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 4 cut(s) 17, 121, 124, 226
FspBI CTAG 1 cut(s) 194
GlaI GCGC 2 cut(s) 33, 323
GluI GCNGC 4 cut(s) 17, 121, 124, 226
HaeII RGCGCY 2 cut(s) 35, 325
HaeIII GGCC 3 cut(s) 47, 79, 213
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 34, 324
Hin1II CATG 2 cut(s) 171, 333
Hin6I GCGC 2 cut(s) 32, 322
HinP1I GCGC 2 cut(s) 32, 322
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 25, 184, 376
Hpy188I TCNGA 2 cut(s) 91, 177
Hpy8I GTNNAC 3 cut(s) 25, 184, 376
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 16, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92II CATG 2 cut(s) 171, 333
HspAI GCGC 2 cut(s) 32, 322
Kzo9I GATC 2 cut(s) 113, 310
LmnI GCTCC 2 cut(s) 146, 260
LpnPI CCDG 6 cut(s) 54, 129, 140, 156, 191, 254
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 115, 312
MboI GATC 2 cut(s) 113, 310
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 2 cut(s) 289, 367
MluNI TGGCCA 1 cut(s) 213
MnlI CCTC 4 cut(s) 37, 292, 336, 369
Mox20I TGGCCA 1 cut(s) 213
MscI TGGCCA 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 213
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 76
NcoI CCATGG 1 cut(s) 329
NdeI CATATG 1 cut(s) 256
NdeII GATC 2 cut(s) 113, 310
NlaIII CATG 2 cut(s) 171, 333
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 295
PkrI GCNGC 4 cut(s) 18, 122, 125, 227
Psp124BI GAGCTC 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 2 cut(s) 235, 251
RsaNI GTAC 2 cut(s) 234, 250
SacI GAGCTC 1 cut(s) 265
SatI GCNGC 4 cut(s) 17, 121, 124, 226
Sau3AI GATC 2 cut(s) 113, 310
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 265
SetI ASST 4 cut(s) 100, 210, 265, 278
Sse9I AATT 2 cut(s) 289, 367
SsiI CCGC 5 cut(s) 38, 68, 121, 124, 225
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 181
TasI AATT 2 cut(s) 289, 367
TatI WGTACW 1 cut(s) 233
TauI GCSGC 3 cut(s) 123, 126, 228
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 295
TspGWI ACGGA 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.