Rh5CG070300

LOL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011353
Physical Location & Seq
Reverse (-)
5281730 .. 5283791
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG070300.1

Sequence Viewer

Length: 300 bp
ATGGAGACCAAAGTGCAGCAAGCAGACGAAGCGCCACCGCCGGAGGCCCAACGCATCGTTTCACAACCACCAACGCCACCACTTTCCGAAATAGCTCAAATGGTGTGTGGATCTTGCCGCCACCTGCTTACATACCCACCAGGAGCCAAGCATGTTCAATGCTCATGCTGTCAGACTGTCAACTTTGTGCTAGAAGGTTTGTCTCTCTTCCTCTCTCACTTGGTTATTGGTTATTGTTCTCAGTCTCATTCTTTCATTTCCTTAGCTCAAAATGTAATGGTTCTTCTCACTGTATTGTGA

Protein Analysis

99

Amino Acids

10.76

Weight (kDa)

6.0

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LSD1 PF06943 36 - 60 3e-11 LSD1 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21610 AT4G21610
fragaria_vesca FvH4_3g09310 FvH4_3g09310
malus_domestica MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica Prupe.4G046600_v2.0.a1
pyrus_communis pycom05g29120 pycom10g24730
rosa_chinensis RchiOBHm_Chr5g0008291
rosa_laevigata RLG00000031559
rosa_multiflora Rmu_co8513525.1_g000001
rosa_roxburghii Rroxscaffold_1G00068170
rosa_rugosa Rorug04G0434800 Rorug04G0434800
rosa_samantha Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana Rw5G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 132
AciI CCGC 2 cut(s) 38, 118
AclWI GGATC 1 cut(s) 118
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 95, 266
AluI AGCT 2 cut(s) 95, 266
Alw26I GTCTC 2 cut(s) 207, 249
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbvI GCAGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 207, 249
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 2 cut(s) 17, 118
BlsI GCNGC 2 cut(s) 18, 119
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 262
BseBI CCWGG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 207, 249
BsnI GGCC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 2 cut(s) 38, 118
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 1 cut(s) 118
BssMI GATC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 178, 292
Bst6I CTCTTC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 240, 262
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 113
BstMAI GTCTC 2 cut(s) 207, 249
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 2 cut(s) 152, 165
CviJI RGCY 4 cut(s) 47, 95, 146, 266
CviKI_1 RGCY 4 cut(s) 47, 95, 146, 266
DdeI CTNAG 2 cut(s) 240, 262
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 155, 168
FaiI YATR 3 cut(s) 133, 153, 166
FatI CATG 2 cut(s) 151, 164
Fnu4HI GCNGC 2 cut(s) 17, 118
Fsp4HI GCNGC 2 cut(s) 17, 118
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 33
GluI GCNGC 2 cut(s) 17, 118
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 34
Hin1II CATG 2 cut(s) 155, 168
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 88, 174
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 2 cut(s) 178, 292
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 2 cut(s) 240, 262
Hsp92II CATG 2 cut(s) 155, 168
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 4 cut(s) 54, 126, 137, 153
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 191
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 2 cut(s) 199, 275
MflI RGATCY 1 cut(s) 110
MnlI CCTC 2 cut(s) 37, 221
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 110
NlaIII CATG 2 cut(s) 155, 168
NlaIV GGNNCC 1 cut(s) 145
NspI RCATGY 1 cut(s) 155
PaqCI CACCTGC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 18, 119
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 110
SatI GCNGC 2 cut(s) 17, 118
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 141
SetI ASST 4 cut(s) 97, 126, 199, 268
SfaNI GCATC 1 cut(s) 63
SsiI CCGC 2 cut(s) 38, 118
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 178, 292
TauI GCSGC 1 cut(s) 120
TscAI CASTG 1 cut(s) 295
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 1 cut(s) 295
XceI RCATGY 1 cut(s) 155
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.