pycom05g29120

LOL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011353
Physical Location & Seq
Forward (+)
29640127 .. 29641746
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29120.1

Sequence Viewer

Length: 195 bp
ATGGAGAGCAAAGTGGAGGTAGACGAAGCGCCGCAGCCGGAGCTCCAATCCACCGCCGCGCAGCCATCACCGCCTTCCGTGTTGCTGATGTACCCGTATGGAGCGCCTTCCGTTAGGTGTTCCTCGTGCCATTTTGTGACAGAAGTTGGGGTAAGTAAACAATTTACATGGAAAAAAATAACGTTACATATGTGA

Protein Analysis

65

Amino Acids

7.08

Weight (kDa)

6.02

Isoelectric Point (pI)

71.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LSD1 PF06943 27 - 46 4.1e-11 LSD1 zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21610 AT4G21610
fragaria_vesca FvH4_3g09310 FvH4_3g09310
malus_domestica MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica Prupe.4G046600_v2.0.a1
pyrus_communis pycom05g29120 pycom10g24730
rosa_chinensis RchiOBHm_Chr5g0008291
rosa_laevigata RLG00000031559
rosa_multiflora Rmu_co8513525.1_g000001
rosa_roxburghii Rroxscaffold_1G00068170
rosa_rugosa Rorug04G0434800 Rorug04G0434800
rosa_samantha Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana Rw5G005740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 59
AciI CCGC 4 cut(s) 32, 54, 57, 71
AclI AACGTT 1 cut(s) 182
AfaI GTAC 1 cut(s) 92
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 34, 61
AspLEI GCGC 3 cut(s) 31, 61, 106
AsuHPI GGTGA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 45
BauI CACGAG 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 46, 73
BccI CCATC 1 cut(s) 73
BfoI RGCGCY 2 cut(s) 32, 107
BisI GCNGC 4 cut(s) 32, 35, 57, 62
BlsI GCNGC 4 cut(s) 33, 36, 58, 63
BseXI GCAGC 2 cut(s) 46, 73
Bsh1236I CGCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 45
BspACI CCGC 4 cut(s) 32, 54, 57, 71
BspFNI CGCG 1 cut(s) 59
BssSI CACGAG 1 cut(s) 124
Bst2BI CACGAG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 2 cut(s) 32, 107
BstHHI GCGC 3 cut(s) 31, 61, 106
BstMWI GCNNNNNNNGC 2 cut(s) 40, 70
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 46, 73
CfoI GCGC 3 cut(s) 31, 61, 106
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 168
CviJI RGCY 3 cut(s) 37, 43, 64
CviKI_1 RGCY 3 cut(s) 37, 43, 64
CviQI GTAC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaeI CATG 1 cut(s) 171
FaiI YATR 4 cut(s) 99, 169, 189, 191
FatI CATG 1 cut(s) 167
FauNDI CATATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 32, 35, 57, 62
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 4 cut(s) 32, 35, 57, 62
GlaI GCGC 3 cut(s) 30, 60, 105
GluI GCNGC 4 cut(s) 32, 35, 57, 62
HaeII RGCGCY 2 cut(s) 32, 107
HapII CCGG 1 cut(s) 38
HhaI GCGC 3 cut(s) 31, 61, 106
Hin1II CATG 1 cut(s) 171
Hin6I GCGC 3 cut(s) 29, 59, 104
HinP1I GCGC 3 cut(s) 29, 59, 104
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 22, 158
Hpy8I GTNNAC 2 cut(s) 22, 158
HpyAV CCTTC 2 cut(s) 84, 117
HpyCH4IV ACGT 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 70
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 1 cut(s) 171
HspAI GCGC 3 cut(s) 29, 59, 104
LmnI GCTCC 3 cut(s) 40, 48, 101
LpnPI CCDG 1 cut(s) 51
Lsp1109I GCAGC 2 cut(s) 46, 73
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 136, 183
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 161
MnlI CCTC 2 cut(s) 10, 133
MspI CCGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 40, 70
NdeI CATATG 1 cut(s) 189
NlaIII CATG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 33, 36, 58, 63
Psp124BI GAGCTC 1 cut(s) 45
Psp1406I AACGTT 1 cut(s) 182
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 45
SatI GCNGC 4 cut(s) 32, 35, 57, 62
SduI GDGCHC 1 cut(s) 45
SetI ASST 4 cut(s) 21, 45, 119, 185
SgeI CNNG 7 cut(s) 50, 70, 91, 106, 136, 138, 180
Sse9I AATT 1 cut(s) 161
SsiI CCGC 4 cut(s) 32, 54, 57, 71
SstI GAGCTC 1 cut(s) 45
TaiI ACGT 1 cut(s) 185
TasI AATT 1 cut(s) 161
TauI GCSGC 2 cut(s) 34, 59
TseFI GTSAC 1 cut(s) 136
TseI GCWGC 2 cut(s) 34, 61
Tsp45I GTSAC 1 cut(s) 136
TspGWI ACGGA 2 cut(s) 67, 100
XmiI GTMKAC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.