Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513525.1

Orthogroup ID

OG0011353

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 837

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513525.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

gttggccaagtcaaatgcggcagttgtacaacgctgctgatgtacccatatggagctctatccgttaggtgttcctcgtgcagttttgtgacagaagttagggatcacaacatgcgccctccatggtctgttcaacaagggcaaccaactcctccatccaattctgttcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0031347 GO:0031349 GO:0040008 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

57

Amino Acids

6.23

Weight (kDa)

8.52

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21610 AT4G21610
fragaria_vesca	FvH4_3g09310 FvH4_3g09310
malus_domestica	MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica	Prupe.4G046600_v2.0.a1
pyrus_communis	pycom05g29120 pycom10g24730
rosa_chinensis	RchiOBHm_Chr5g0008291
rosa_laevigata	RLG00000031559
rosa_multiflora	Rmu_co8513525.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068170
rosa_rugosa	Rorug04G0434800 Rorug04G0434800
rosa_samantha	Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana	Rw5G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	4
AfaI	GTAC	2 cut(s)	28, 44
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	111
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	58
BauI	CACGAG	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	19, 35
BlsI	GCNGC	2 cut(s)	20, 36
BsaJI	CCNNGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	122
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	111
BsrGI	TGTACA	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	103
BssSI	CACGAG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	115
BstV1I	GCAGC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	27, 43
CviAII	CATG	2 cut(s)	112, 123
CviJI	RGCY	2 cut(s)	6, 56
CviKI_1	RGCY	2 cut(s)	6, 56
CviQI	GTAC	2 cut(s)	27, 43
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	2 cut(s)	115, 126
FaiI	YATR	4 cut(s)	49, 51, 113, 124
FatI	CATG	2 cut(s)	111, 122
FauNDI	CATATG	1 cut(s)	49
Fnu4HI	GCNGC	2 cut(s)	19, 35
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	19, 35
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	19, 35
HaeIII	GGCC	1 cut(s)	6
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	115, 126
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	115, 126
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	6
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	1 cut(s)	6
MnlI	CCTC	3 cut(s)	85, 129, 162
Mox20I	TGGCCA	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	6
Msp20I	TGGCCA	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	122
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	115, 126
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	20, 36
Psp124BI	GAGCTC	1 cut(s)	58
RsaI	GTAC	2 cut(s)	28, 44
RsaNI	GTAC	2 cut(s)	27, 43
SacI	GAGCTC	1 cut(s)	58
SatI	GCNGC	2 cut(s)	19, 35
Sau3AI	GATC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	2 cut(s)	58, 71
SgeI	CNNG	6 cut(s)	20, 88, 90, 124, 135, 149
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	122
TasI	AATT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	52
XceI	RCATGY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.